Wall clock time and date at job start Tue Mar 31 2020 21:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46499 * 109.47434 * 2 1 4 4 N 1.39935 * 125.75446 * 269.97902 * 3 2 1 5 5 C 1.30445 * 108.89478 * 179.77123 * 4 3 2 6 6 C 1.50708 * 125.98891 * 180.25670 * 5 4 3 7 7 C 1.41286 * 108.02597 * 0.38330 * 5 4 3 8 8 C 1.47430 * 126.41779 * 179.87422 * 7 5 4 9 9 O 1.21601 * 120.00240 * 269.69099 * 8 7 5 10 10 N 1.34779 * 119.99680 * 89.68973 * 8 7 5 11 11 C 1.46498 * 120.00042 * 179.72392 * 10 8 7 12 12 C 1.52997 * 109.47213 * 180.27558 * 11 10 8 13 13 O 1.42896 * 109.46961 * 65.00152 * 12 11 10 14 14 C 1.42902 * 113.99604 * 180.02562 * 13 12 11 15 15 C 1.53007 * 109.46946 * 180.02562 * 14 13 12 16 16 N 1.46495 * 109.47174 * 64.99583 * 15 14 13 17 17 C 1.46499 * 120.00499 * 270.00185 * 16 15 14 18 18 C 1.36937 * 119.99894 * 90.00018 * 16 15 14 19 19 H 1.08004 * 120.00018 * 22.71182 * 18 16 15 20 20 C 1.38813 * 120.00280 * 202.70429 * 18 16 15 21 21 N 1.31618 * 119.99720 * 11.51436 * 20 18 16 22 22 Si 1.86799 * 120.00167 * 191.51967 * 20 18 16 23 23 H 1.48503 * 109.46960 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47283 * 119.99969 * 22 20 18 25 25 H 1.48500 * 109.46953 * 239.99705 * 22 20 18 26 26 C 1.34251 * 125.75296 * 90.00089 * 3 2 1 27 27 C 1.50700 * 126.29279 * 359.96020 * 26 3 2 28 28 H 1.08999 * 109.46853 * 300.00125 * 1 2 3 29 29 H 1.09006 * 109.46813 * 59.99738 * 1 2 3 30 30 H 1.08993 * 109.47167 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46853 * 239.99875 * 2 1 3 32 32 H 1.08997 * 109.47085 * 120.00266 * 2 1 3 33 33 H 1.09002 * 109.47321 * 270.14883 * 6 5 4 34 34 H 1.09006 * 109.46629 * 30.14673 * 6 5 4 35 35 H 1.08992 * 109.46987 * 150.14839 * 6 5 4 36 36 H 0.97003 * 120.00071 * 359.97438 * 10 8 7 37 37 H 1.09000 * 109.46989 * 300.28000 * 11 10 8 38 38 H 1.09004 * 109.46981 * 60.27500 * 11 10 8 39 39 H 1.09004 * 109.47247 * 185.00436 * 12 11 10 40 40 H 1.09002 * 109.47167 * 305.00053 * 12 11 10 41 41 H 1.09001 * 109.47276 * 299.99877 * 14 13 12 42 42 H 1.08999 * 109.47430 * 60.00152 * 14 13 12 43 43 H 1.08995 * 109.46983 * 184.99726 * 15 14 13 44 44 H 1.08998 * 109.46804 * 304.99861 * 15 14 13 45 45 H 1.08999 * 109.47231 * 93.91583 * 17 16 15 46 46 H 1.08994 * 109.47110 * 213.92153 * 17 16 15 47 47 H 1.09001 * 109.46598 * 333.91881 * 17 16 15 48 48 H 0.97005 * 119.99848 * 180.02562 * 21 20 18 49 49 H 1.09002 * 109.47267 * 270.02332 * 27 26 3 50 50 H 1.09000 * 109.47365 * 30.01903 * 27 26 3 51 51 H 1.09005 * 109.47363 * 150.02491 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 7 2.2914 2.1519 -1.1356 5 6 2.7029 3.3306 -0.7573 6 6 3.0968 4.4653 -1.6675 7 6 2.7172 3.3560 0.6553 8 6 3.1182 4.4913 1.5062 9 8 4.2763 4.6083 1.8579 10 7 2.2010 5.3994 1.8942 11 6 2.5981 6.5242 2.7447 12 6 1.3758 7.3949 3.0424 13 8 0.4364 6.6478 3.8179 14 6 -0.7487 7.3731 4.1518 15 6 -1.6769 6.4807 4.9784 16 7 -1.0399 6.1679 6.2599 17 6 -0.1899 4.9813 6.3852 18 6 -1.2388 6.9847 7.3409 19 1 -2.1108 7.6206 7.3840 20 6 -0.3199 6.9954 8.3812 21 7 0.8459 6.4021 8.2357 22 14 -0.7380 7.8519 9.9879 23 1 -2.0996 8.4375 9.8969 24 1 -0.6950 6.8678 11.0992 25 1 0.2487 8.9316 10.2445 26 6 2.2800 2.1207 1.0895 27 6 2.1243 1.6830 2.5231 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 4.1617 4.3992 -1.8907 34 1 2.5267 4.4023 -2.5944 35 1 2.8870 5.4151 -1.1757 36 1 1.2772 5.3063 1.6133 37 1 3.0105 6.1448 3.6796 38 1 3.3521 7.1201 2.2303 39 1 1.6862 8.2785 3.6001 40 1 0.9111 7.7015 2.1053 41 1 -0.4827 8.2565 4.7324 42 1 -1.2574 7.6789 3.2375 43 1 -2.6172 7.0019 5.1577 44 1 -1.8717 5.5565 4.4343 45 1 0.8499 5.2594 6.2134 46 1 -0.2938 4.5641 7.3868 47 1 -0.4936 4.2375 5.6486 48 1 1.4879 6.4092 8.9629 49 1 1.1180 1.9203 2.8683 50 1 2.2889 0.6079 2.5947 51 1 2.8535 2.2043 3.1434 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734283949.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:51 Heat of formation + Delta-G solvation = 8.258294 kcal Electronic energy + Delta-G solvation = -30152.677889 eV Core-core repulsion = 26089.677967 eV Total energy + Delta-G solvation = -4062.999923 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.60693 -39.11280 -37.54896 -35.39552 -35.19478 -34.25108 -32.61877 -31.48602 -31.09362 -29.56560 -28.16041 -27.63045 -27.17405 -25.69884 -23.98642 -23.00981 -22.58797 -21.46290 -20.33470 -19.83869 -19.52621 -17.51895 -16.84857 -16.50624 -16.18399 -15.97444 -15.51487 -15.08133 -14.78464 -14.68773 -14.49313 -13.98355 -13.83836 -13.67259 -13.50931 -13.38252 -13.29140 -13.21914 -13.01893 -12.68030 -12.50139 -12.41526 -12.13647 -12.11467 -12.01077 -11.64630 -11.52304 -11.37077 -10.91126 -10.85818 -10.82913 -10.75755 -10.50223 -10.05964 -9.89084 -9.83760 -9.76749 -9.31192 -8.99063 -8.88018 -8.60171 -8.48277 -6.66163 -5.64893 -3.11137 1.58232 2.15890 2.36014 2.74203 3.39646 3.46733 3.48564 3.48677 4.16408 4.22005 4.36196 4.54671 4.58169 4.61478 4.74285 4.87221 5.07359 5.13447 5.21398 5.28944 5.31916 5.35244 5.37348 5.44137 5.46360 5.58163 5.62251 5.66250 5.68891 5.72226 5.78299 5.80128 5.89415 6.03457 6.14521 6.22082 6.24704 6.40046 6.54430 6.60715 6.75526 6.77639 6.94801 7.51604 7.51912 7.69020 7.81101 7.84534 7.98429 8.40502 8.46845 9.31451 9.95142 10.45517 11.39140 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.014014 B = 0.002642 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.565648 B =10593.666065 C =11347.843782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.126 3.874 3 N -0.359 5.359 4 N -0.300 5.300 5 C 0.111 3.889 6 C -0.075 4.075 7 C -0.286 4.286 8 C 0.598 3.402 9 O -0.541 6.541 10 N -0.711 5.711 11 C 0.124 3.876 12 C 0.051 3.949 13 O -0.366 6.366 14 C 0.043 3.957 15 C 0.153 3.847 16 N -0.596 5.596 17 C 0.176 3.824 18 C -0.257 4.257 19 H 0.067 0.933 20 C 0.002 3.998 21 N -0.901 5.901 22 Si 0.901 3.099 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.291 1.291 26 C 0.134 3.866 27 C -0.101 4.101 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.403 0.597 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.043 0.957 41 H 0.048 0.952 42 H 0.024 0.976 43 H 0.057 0.943 44 H 0.042 0.958 45 H 0.032 0.968 46 H 0.036 0.964 47 H -0.008 1.008 48 H 0.250 0.750 49 H 0.091 0.909 50 H 0.075 0.925 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.400 -9.004 -19.486 21.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.005 3.995 3 N -0.139 5.139 4 N -0.122 5.122 5 C -0.056 4.056 6 C -0.133 4.133 7 C -0.300 4.300 8 C 0.383 3.617 9 O -0.417 6.417 10 N -0.362 5.362 11 C 0.000 4.000 12 C -0.027 4.027 13 O -0.285 6.285 14 C -0.037 4.037 15 C 0.025 3.975 16 N -0.319 5.319 17 C 0.031 3.969 18 C -0.386 4.386 19 H 0.084 0.916 20 C -0.196 4.196 21 N -0.546 5.546 22 Si 0.731 3.269 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.218 1.218 26 C 0.004 3.996 27 C -0.159 4.159 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.238 0.762 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.062 0.938 41 H 0.067 0.933 42 H 0.042 0.958 43 H 0.076 0.924 44 H 0.061 0.939 45 H 0.051 0.949 46 H 0.055 0.945 47 H 0.010 0.990 48 H 0.061 0.939 49 H 0.110 0.890 50 H 0.094 0.906 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.083 -10.041 -20.020 22.423 hybrid contribution -0.386 1.262 1.409 1.931 sum 0.696 -8.779 -18.611 20.590 Atomic orbital electron populations 1.22190 0.93869 1.03266 1.03554 1.21745 0.95546 0.77620 1.04610 1.48321 1.50405 1.12123 1.03089 1.77058 1.23861 1.03886 1.07356 1.22255 0.97074 0.94129 0.92108 1.20224 1.02241 0.93311 0.97543 1.19834 1.20431 0.96150 0.93630 1.17264 0.84870 0.80888 0.78707 1.90776 1.18867 1.75762 1.56332 1.45947 1.12268 1.26362 1.51645 1.21413 0.95839 0.87453 0.95261 1.22604 0.90415 0.94864 0.94798 1.88007 1.29536 1.38996 1.71967 1.23505 0.86440 0.97257 0.96488 1.20882 0.93497 0.96173 0.86948 1.43882 1.56459 1.26282 1.05246 1.20675 0.94288 0.85401 0.96503 1.19236 1.03578 1.19524 0.96311 0.91571 1.25029 0.95107 1.00003 0.99472 1.70105 1.05928 1.47315 1.31283 0.86244 0.77553 0.78925 0.84157 1.20441 1.21693 1.21831 1.21389 0.96400 0.90744 0.91090 1.20615 1.04824 1.02221 0.88235 0.91637 0.91525 0.90319 0.88530 0.88682 0.90104 0.90514 0.90445 0.76226 0.90091 0.90521 0.92106 0.93848 0.93329 0.95779 0.92446 0.93933 0.94931 0.94493 0.98987 0.93941 0.89007 0.90624 0.88964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.07 10.24 37.16 0.38 -0.69 16 2 C 0.13 0.90 6.93 -4.04 -0.03 0.87 16 3 N -0.36 -4.02 3.58 -56.60 -0.20 -4.23 16 4 N -0.30 -3.89 12.50 33.90 0.42 -3.46 16 5 C 0.11 1.43 7.26 -82.02 -0.60 0.83 16 6 C -0.07 -0.73 10.28 36.01 0.37 -0.36 16 7 C -0.29 -3.95 5.88 -105.07 -0.62 -4.56 16 8 C 0.60 9.16 6.97 -12.52 -0.09 9.08 16 9 O -0.54 -10.23 17.11 5.28 0.09 -10.14 16 10 N -0.71 -9.76 5.50 -61.38 -0.34 -10.10 16 11 C 0.12 1.78 6.06 -4.04 -0.02 1.76 16 12 C 0.05 0.74 6.07 37.16 0.23 0.96 16 13 O -0.37 -6.76 9.84 -35.23 -0.35 -7.10 16 14 C 0.04 0.78 6.28 37.16 0.23 1.01 16 15 C 0.15 3.09 6.11 -4.04 -0.02 3.07 16 16 N -0.60 -15.04 2.89 -181.12 -0.52 -15.56 16 17 C 0.18 4.45 8.61 59.85 0.52 4.96 16 18 C -0.26 -7.04 9.67 -15.06 -0.15 -7.19 16 19 H 0.07 1.77 7.85 -52.48 -0.41 1.35 16 20 C 0.00 0.07 5.12 -17.43 -0.09 -0.02 16 21 N -0.90 -26.51 10.62 55.49 0.59 -25.92 16 22 Si 0.90 21.89 29.57 -169.99 -5.03 16.86 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 C 0.13 1.64 7.01 -81.60 -0.57 1.07 16 27 C -0.10 -1.02 9.93 36.01 0.36 -0.67 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 0.49 7.02 -51.93 -0.36 0.13 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.71 8.00 -51.93 -0.42 0.29 16 36 H 0.40 5.03 8.46 -40.82 -0.35 4.68 16 37 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 38 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.06 1.09 8.03 -51.93 -0.42 0.67 16 44 H 0.04 0.80 7.87 -51.93 -0.41 0.39 16 45 H 0.03 0.90 7.43 -51.93 -0.39 0.52 16 46 H 0.04 1.00 7.20 -51.93 -0.37 0.63 16 47 H -0.01 -0.19 7.85 -51.93 -0.41 -0.60 16 48 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 49 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 50 H 0.07 0.57 7.05 -51.93 -0.37 0.20 16 51 H 0.09 1.10 7.96 -51.93 -0.41 0.68 16 LS Contribution 424.21 15.07 6.39 6.39 Total: -1.00 -35.16 424.21 -7.98 -43.15 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -8.94 Total: -0.02 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: -0.10 Total: 10.13 kcal Atomic # 7 Polarization: -59.22 SS G_CDS: -0.05 Total: -59.27 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -0.26 Total: -17.24 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 6.39 Total: 6.39 kcal Total: -35.16 -7.98 -43.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734283949.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.405 kcal (2) G-P(sol) polarization free energy of solvation -35.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds