Wall clock time and date at job start Tue Mar 31 2020 21:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46499 * 109.47434 * 2 1 4 4 N 1.39935 * 125.75446 * 269.97902 * 3 2 1 5 5 C 1.30445 * 108.89478 * 179.77123 * 4 3 2 6 6 C 1.50708 * 125.98891 * 180.25670 * 5 4 3 7 7 C 1.41286 * 108.02597 * 0.38330 * 5 4 3 8 8 C 1.47430 * 126.41779 * 179.87422 * 7 5 4 9 9 O 1.21601 * 120.00240 * 269.69099 * 8 7 5 10 10 N 1.34779 * 119.99680 * 89.68973 * 8 7 5 11 11 C 1.46498 * 120.00042 * 179.72392 * 10 8 7 12 12 C 1.52997 * 109.47213 * 180.27558 * 11 10 8 13 13 O 1.42896 * 109.46961 * 65.00152 * 12 11 10 14 14 C 1.42902 * 113.99604 * 180.02562 * 13 12 11 15 15 C 1.53007 * 109.46946 * 180.02562 * 14 13 12 16 16 N 1.46495 * 109.47174 * 64.99583 * 15 14 13 17 17 C 1.46499 * 120.00499 * 270.00185 * 16 15 14 18 18 C 1.36937 * 119.99894 * 90.00018 * 16 15 14 19 19 H 1.08004 * 120.00018 * 22.71182 * 18 16 15 20 20 C 1.38813 * 120.00280 * 202.70429 * 18 16 15 21 21 N 1.31618 * 119.99720 * 11.51436 * 20 18 16 22 22 Si 1.86799 * 120.00167 * 191.51967 * 20 18 16 23 23 H 1.48503 * 109.46960 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47283 * 119.99969 * 22 20 18 25 25 H 1.48500 * 109.46953 * 239.99705 * 22 20 18 26 26 C 1.34251 * 125.75296 * 90.00089 * 3 2 1 27 27 C 1.50700 * 126.29279 * 359.96020 * 26 3 2 28 28 H 1.08999 * 109.46853 * 300.00125 * 1 2 3 29 29 H 1.09006 * 109.46813 * 59.99738 * 1 2 3 30 30 H 1.08993 * 109.47167 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46853 * 239.99875 * 2 1 3 32 32 H 1.08997 * 109.47085 * 120.00266 * 2 1 3 33 33 H 1.09002 * 109.47321 * 270.14883 * 6 5 4 34 34 H 1.09006 * 109.46629 * 30.14673 * 6 5 4 35 35 H 1.08992 * 109.46987 * 150.14839 * 6 5 4 36 36 H 0.97003 * 120.00071 * 359.97438 * 10 8 7 37 37 H 1.09000 * 109.46989 * 300.28000 * 11 10 8 38 38 H 1.09004 * 109.46981 * 60.27500 * 11 10 8 39 39 H 1.09004 * 109.47247 * 185.00436 * 12 11 10 40 40 H 1.09002 * 109.47167 * 305.00053 * 12 11 10 41 41 H 1.09001 * 109.47276 * 299.99877 * 14 13 12 42 42 H 1.08999 * 109.47430 * 60.00152 * 14 13 12 43 43 H 1.08995 * 109.46983 * 184.99726 * 15 14 13 44 44 H 1.08998 * 109.46804 * 304.99861 * 15 14 13 45 45 H 1.08999 * 109.47231 * 93.91583 * 17 16 15 46 46 H 1.08994 * 109.47110 * 213.92153 * 17 16 15 47 47 H 1.09001 * 109.46598 * 333.91881 * 17 16 15 48 48 H 0.97005 * 119.99848 * 180.02562 * 21 20 18 49 49 H 1.09002 * 109.47267 * 270.02332 * 27 26 3 50 50 H 1.09000 * 109.47365 * 30.01903 * 27 26 3 51 51 H 1.09005 * 109.47363 * 150.02491 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 7 2.2914 2.1519 -1.1356 5 6 2.7029 3.3306 -0.7573 6 6 3.0968 4.4653 -1.6675 7 6 2.7172 3.3560 0.6553 8 6 3.1182 4.4913 1.5062 9 8 4.2763 4.6083 1.8579 10 7 2.2010 5.3994 1.8942 11 6 2.5981 6.5242 2.7447 12 6 1.3758 7.3949 3.0424 13 8 0.4364 6.6478 3.8179 14 6 -0.7487 7.3731 4.1518 15 6 -1.6769 6.4807 4.9784 16 7 -1.0399 6.1679 6.2599 17 6 -0.1899 4.9813 6.3852 18 6 -1.2388 6.9847 7.3409 19 1 -2.1108 7.6206 7.3840 20 6 -0.3199 6.9954 8.3812 21 7 0.8459 6.4021 8.2357 22 14 -0.7380 7.8519 9.9879 23 1 -2.0996 8.4375 9.8969 24 1 -0.6950 6.8678 11.0992 25 1 0.2487 8.9316 10.2445 26 6 2.2800 2.1207 1.0895 27 6 2.1243 1.6830 2.5231 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 4.1617 4.3992 -1.8907 34 1 2.5267 4.4023 -2.5944 35 1 2.8870 5.4151 -1.1757 36 1 1.2772 5.3063 1.6133 37 1 3.0105 6.1448 3.6796 38 1 3.3521 7.1201 2.2303 39 1 1.6862 8.2785 3.6001 40 1 0.9111 7.7015 2.1053 41 1 -0.4827 8.2565 4.7324 42 1 -1.2574 7.6789 3.2375 43 1 -2.6172 7.0019 5.1577 44 1 -1.8717 5.5565 4.4343 45 1 0.8499 5.2594 6.2134 46 1 -0.2938 4.5641 7.3868 47 1 -0.4936 4.2375 5.6486 48 1 1.4879 6.4092 8.9629 49 1 1.1180 1.9203 2.8683 50 1 2.2889 0.6079 2.5947 51 1 2.8535 2.2043 3.1434 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734283949.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:50 Heat of formation + Delta-G solvation = -15.696297 kcal Electronic energy + Delta-G solvation = -30153.716639 eV Core-core repulsion = 26089.677967 eV Total energy + Delta-G solvation = -4064.038672 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.52498 -40.32611 -38.97022 -37.17997 -35.94733 -35.61030 -33.50532 -33.33386 -31.94920 -30.89291 -29.54652 -28.59026 -28.12021 -27.77769 -24.91372 -24.70312 -23.57650 -22.54440 -22.11379 -20.90220 -20.37932 -18.75164 -18.53123 -17.62940 -17.52789 -17.10502 -16.88500 -16.37101 -16.14227 -15.88407 -15.53025 -15.29845 -15.18690 -14.94856 -14.80057 -14.51611 -14.33742 -14.16507 -13.96835 -13.92642 -13.65498 -13.42541 -13.13046 -13.10186 -13.00805 -12.92787 -12.74388 -12.72454 -12.50171 -12.45191 -12.30304 -12.21162 -11.96734 -11.80222 -11.75520 -11.65056 -11.03629 -10.60476 -10.35150 -10.17730 -10.10277 -9.56519 -8.70388 -7.75943 -5.23765 0.66751 1.36393 1.40934 1.47130 1.48497 1.55545 1.58448 2.36108 2.54136 2.89866 3.37239 3.44079 3.51688 3.79828 3.87791 3.95755 4.04917 4.07025 4.17310 4.22365 4.30549 4.35493 4.48766 4.56583 4.56792 4.61591 4.65939 4.69531 4.71123 4.71838 4.74127 4.81360 4.89828 4.93328 4.97613 4.98612 5.03180 5.07978 5.21576 5.23277 5.40854 5.42088 5.51616 5.69069 5.87146 5.94996 6.38020 6.49166 6.55434 6.60484 7.21629 7.23598 7.95268 8.40310 9.27020 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.014014 B = 0.002642 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.565648 B =10593.666065 C =11347.843782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.114 3.886 3 N -0.354 5.354 4 N -0.318 5.318 5 C 0.104 3.896 6 C -0.074 4.074 7 C -0.315 4.315 8 C 0.604 3.396 9 O -0.584 6.584 10 N -0.699 5.699 11 C 0.130 3.870 12 C 0.054 3.946 13 O -0.392 6.392 14 C 0.051 3.949 15 C 0.146 3.854 16 N -0.613 5.613 17 C 0.197 3.803 18 C -0.259 4.259 19 H 0.074 0.926 20 C -0.055 4.055 21 N -0.935 5.935 22 Si 0.965 3.035 23 H -0.264 1.264 24 H -0.294 1.294 25 H -0.296 1.296 26 C 0.134 3.866 27 C -0.098 4.098 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.104 0.896 31 H 0.106 0.894 32 H 0.119 0.881 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.412 0.588 37 H 0.045 0.955 38 H 0.093 0.907 39 H 0.056 0.944 40 H 0.079 0.921 41 H 0.021 0.979 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.060 0.940 45 H 0.000 1.000 46 H 0.007 0.993 47 H 0.020 0.980 48 H 0.244 0.756 49 H 0.098 0.902 50 H 0.105 0.895 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.460 -9.348 -20.884 22.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.005 4.005 3 N -0.134 5.134 4 N -0.140 5.140 5 C -0.062 4.062 6 C -0.132 4.132 7 C -0.330 4.330 8 C 0.390 3.610 9 O -0.464 6.464 10 N -0.350 5.350 11 C 0.006 3.994 12 C -0.023 4.023 13 O -0.311 6.311 14 C -0.027 4.027 15 C 0.020 3.980 16 N -0.336 5.336 17 C 0.052 3.948 18 C -0.390 4.390 19 H 0.091 0.909 20 C -0.250 4.250 21 N -0.582 5.582 22 Si 0.794 3.206 23 H -0.188 1.188 24 H -0.221 1.221 25 H -0.223 1.223 26 C 0.002 3.998 27 C -0.156 4.156 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.122 0.878 31 H 0.124 0.876 32 H 0.137 0.863 33 H 0.102 0.898 34 H 0.111 0.889 35 H 0.099 0.901 36 H 0.248 0.752 37 H 0.064 0.936 38 H 0.111 0.889 39 H 0.074 0.926 40 H 0.097 0.903 41 H 0.040 0.960 42 H 0.086 0.914 43 H 0.089 0.911 44 H 0.079 0.921 45 H 0.018 0.982 46 H 0.026 0.974 47 H 0.038 0.962 48 H 0.053 0.947 49 H 0.117 0.883 50 H 0.123 0.877 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.848 -10.380 -21.469 23.862 hybrid contribution 0.133 1.299 1.758 2.190 sum -0.715 -9.081 -19.711 21.714 Atomic orbital electron populations 1.22148 0.93036 1.04581 1.02424 1.22171 0.96214 0.75807 1.06292 1.48670 1.49402 1.13049 1.02273 1.77010 1.24481 1.04156 1.08357 1.22652 0.96746 0.94781 0.92041 1.20314 1.02649 0.92509 0.97771 1.19855 1.22601 0.96433 0.94120 1.17485 0.84249 0.81125 0.78183 1.90746 1.20697 1.76841 1.58148 1.45858 1.12495 1.25819 1.50796 1.21316 0.96328 0.87734 0.94038 1.22698 0.89749 0.94096 0.95716 1.87964 1.30236 1.40028 1.72919 1.23252 0.86401 0.95393 0.97697 1.21124 0.93959 0.97694 0.85255 1.44106 1.56484 1.26064 1.06962 1.20305 0.92807 0.86171 0.95534 1.19603 1.03397 1.18918 0.97062 0.90864 1.25784 0.95184 1.01389 1.02678 1.70289 1.06905 1.49246 1.31790 0.85237 0.77742 0.77524 0.80147 1.18814 1.22122 1.22307 1.21640 0.95614 0.90457 0.92083 1.20645 1.04441 1.03854 0.86659 0.92304 0.93018 0.87775 0.87570 0.86335 0.89788 0.88919 0.90077 0.75211 0.93640 0.88867 0.92583 0.90262 0.96030 0.91401 0.91059 0.92129 0.98209 0.97374 0.96157 0.94708 0.88332 0.87652 0.91190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 10.24 71.98 0.74 -0.96 16 2 C 0.11 1.38 6.93 86.38 0.60 1.98 16 3 N -0.35 -7.46 3.58 -333.00 -1.19 -8.66 16 4 N -0.32 -7.95 12.50 -46.67 -0.58 -8.53 16 5 C 0.10 2.61 7.26 43.52 0.32 2.93 16 6 C -0.07 -1.38 10.28 71.24 0.73 -0.64 16 7 C -0.32 -8.67 5.88 -20.15 -0.12 -8.79 16 8 C 0.60 18.78 6.97 86.66 0.60 19.38 16 9 O -0.58 -22.89 17.11 -4.03 -0.07 -22.96 16 10 N -0.70 -19.00 5.50 -466.37 -2.56 -21.56 16 11 C 0.13 3.75 6.06 86.38 0.52 4.27 16 12 C 0.05 1.51 6.07 71.98 0.44 1.94 16 13 O -0.39 -14.01 9.84 -148.98 -1.47 -15.47 16 14 C 0.05 1.77 6.28 71.98 0.45 2.22 16 15 C 0.15 5.58 6.11 86.38 0.53 6.11 16 16 N -0.61 -30.59 2.89 -726.95 -2.10 -32.69 16 17 C 0.20 10.07 8.61 127.77 1.10 11.17 16 18 C -0.26 -14.13 9.67 84.03 0.81 -13.32 16 19 H 0.07 3.81 7.85 -2.91 -0.02 3.79 16 20 C -0.06 -3.13 5.12 84.86 0.43 -2.70 16 21 N -0.94 -56.50 10.62 21.65 0.23 -56.27 16 22 Si 0.96 45.35 29.57 68.60 2.03 47.38 16 23 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 24 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 25 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 26 C 0.13 3.18 7.01 42.14 0.30 3.48 16 27 C -0.10 -1.91 9.93 71.24 0.71 -1.20 16 28 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 30 H 0.10 0.55 8.14 -2.39 -0.02 0.54 16 31 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.12 0.88 7.02 -2.39 -0.02 0.86 16 33 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 35 H 0.08 1.42 8.00 -2.39 -0.02 1.40 16 36 H 0.41 9.79 8.46 -92.71 -0.78 9.01 16 37 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.09 2.39 8.14 -2.39 -0.02 2.38 16 39 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.07 2.51 8.03 -2.39 -0.02 2.49 16 44 H 0.06 2.10 7.87 -2.39 -0.02 2.08 16 45 H 0.00 -0.02 7.43 -2.39 -0.02 -0.04 16 46 H 0.01 0.42 7.20 -2.39 -0.02 0.41 16 47 H 0.02 0.89 7.85 -2.39 -0.02 0.87 16 48 H 0.24 14.40 8.31 -92.70 -0.77 13.63 16 49 H 0.10 1.78 8.14 -2.39 -0.02 1.77 16 50 H 0.10 1.36 7.05 -2.39 -0.02 1.35 16 51 H 0.07 1.70 7.96 -2.38 -0.02 1.68 16 Total: -1.00 -77.91 424.21 2.57 -75.34 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: 0.13 Total: 17.55 kcal Atomic # 6 Polarization: 17.71 SS G_CDS: 8.16 Total: 25.87 kcal Atomic # 7 Polarization: -121.50 SS G_CDS: -6.21 Total: -127.71 kcal Atomic # 8 Polarization: -36.90 SS G_CDS: -1.54 Total: -38.43 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -77.91 2.57 -75.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734283949.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.643 kcal (2) G-P(sol) polarization free energy of solvation -77.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds