Wall clock time and date at job start Tue Mar 31 2020 22:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46765 * 124.35217 * 2 1 4 4 C 1.54655 * 105.38446 * 162.85267 * 3 2 1 5 5 H 1.09002 * 110.82067 * 143.78217 * 4 3 2 6 6 C 1.50699 * 111.22421 * 267.57824 * 4 3 2 7 7 O 1.21282 * 120.00372 * 353.88486 * 6 4 3 8 8 N 1.34783 * 119.99911 * 173.87962 * 6 4 3 9 9 C 1.46498 * 119.99909 * 180.02562 * 8 6 4 10 10 C 1.52999 * 109.47078 * 180.02562 * 9 8 6 11 11 C 1.53000 * 109.47430 * 180.02562 * 10 9 8 12 12 N 1.46893 * 109.47544 * 180.02562 * 11 10 9 13 13 C 1.46904 * 110.99626 * 294.30037 * 12 11 10 14 14 C 1.53240 * 109.33934 * 172.74704 * 13 12 11 15 15 N 1.47083 * 108.52244 * 53.82750 * 14 13 12 16 16 C 1.36940 * 120.87822 * 128.83636 * 15 14 13 17 17 H 1.08000 * 120.00179 * 333.49669 * 16 15 14 18 18 C 1.38812 * 119.99269 * 153.50123 * 16 15 14 19 19 N 1.31620 * 119.99677 * 159.48771 * 18 16 15 20 20 Si 1.86798 * 120.00321 * 339.48176 * 18 16 15 21 21 H 1.48499 * 109.47033 * 91.94695 * 20 18 16 22 22 H 1.48503 * 109.46937 * 211.94426 * 20 18 16 23 23 H 1.48503 * 109.47137 * 331.94651 * 20 18 16 24 24 C 1.47073 * 118.23602 * 308.81862 * 15 14 13 25 25 C 1.46895 * 111.00385 * 169.99802 * 12 11 10 26 26 C 1.54629 * 101.68481 * 25.76582 * 4 3 2 27 27 C 1.34420 * 124.34809 * 180.29656 * 2 1 3 28 28 O 1.21275 * 124.94510 * 0.43468 * 27 2 1 29 29 H 1.08997 * 109.47043 * 179.72203 * 1 2 3 30 30 H 1.09000 * 109.47107 * 299.72888 * 1 2 3 31 31 H 1.09000 * 109.46648 * 59.72499 * 1 2 3 32 32 H 1.09002 * 110.24559 * 281.98642 * 3 2 1 33 33 H 1.08998 * 110.24269 * 43.97906 * 3 2 1 34 34 H 0.96999 * 119.99792 * 0.02562 * 8 6 4 35 35 H 1.09007 * 109.46829 * 299.99977 * 9 8 6 36 36 H 1.08994 * 109.47320 * 60.00254 * 9 8 6 37 37 H 1.09007 * 109.46942 * 299.99504 * 10 9 8 38 38 H 1.08998 * 109.47613 * 59.99854 * 10 9 8 39 39 H 1.09007 * 109.46586 * 299.99640 * 11 10 9 40 40 H 1.09003 * 109.47332 * 59.99144 * 11 10 9 41 41 H 1.09005 * 109.49275 * 292.70278 * 13 12 11 42 42 H 1.08997 * 109.49759 * 52.78655 * 13 12 11 43 43 H 1.08997 * 109.62927 * 294.11643 * 14 13 12 44 44 H 1.09006 * 109.62672 * 173.53658 * 14 13 12 45 45 H 0.97004 * 120.00341 * 179.97438 * 19 18 16 46 46 H 1.09010 * 109.62703 * 291.47082 * 24 15 14 47 47 H 1.09004 * 109.63046 * 170.89557 * 24 15 14 48 48 H 1.08997 * 109.49110 * 307.21398 * 25 12 11 49 49 H 1.08998 * 109.49184 * 67.26184 * 25 12 11 50 50 H 1.08998 * 110.48856 * 216.30818 * 26 4 3 51 51 H 1.09007 * 110.48340 * 93.66680 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2932 1.2117 0.0000 4 6 3.7010 0.7464 0.4396 5 1 4.4754 1.3016 -0.0898 6 6 3.8759 0.8715 1.9312 7 8 3.0121 1.3967 2.6012 8 7 4.9923 0.3996 2.5208 9 6 5.1621 0.5207 3.9708 10 6 6.5046 -0.0887 4.3798 11 6 6.6817 0.0372 5.8943 12 7 7.9709 -0.5472 6.2869 13 6 7.9874 -1.9962 6.0451 14 6 9.3996 -2.5362 6.2944 15 7 9.8260 -2.1254 7.6408 16 6 10.3192 -3.0410 8.5317 17 1 10.0252 -4.0777 8.4591 18 6 11.1969 -2.6365 9.5282 19 7 11.3585 -3.3780 10.6035 20 14 12.1488 -1.0399 9.3428 21 1 11.3837 0.0680 9.9691 22 1 13.4684 -1.1700 10.0113 23 1 12.3509 -0.7487 7.9008 24 6 9.7090 -0.7052 8.0047 25 6 8.2847 -0.2372 7.6880 26 6 3.6898 -0.7379 0.0063 27 6 2.2235 -1.1098 -0.0057 28 8 1.7947 -2.2441 -0.0192 29 1 -0.3633 -1.0276 -0.0050 30 1 -0.3633 0.5096 0.8924 31 1 -0.3632 0.5181 -0.8875 32 1 2.3307 1.6429 -1.0004 33 1 1.8985 1.9383 0.7101 34 1 5.6833 -0.0203 1.9849 35 1 5.1404 1.5735 4.2525 36 1 4.3539 -0.0075 4.4766 37 1 6.5266 -1.1415 4.0981 38 1 7.3127 0.4398 3.8740 39 1 6.6595 1.0899 6.1764 40 1 5.8735 -0.4915 6.3998 41 1 7.2862 -2.4857 6.7210 42 1 7.6984 -2.1961 5.0133 43 1 10.0847 -2.1262 5.5524 44 1 9.3925 -3.6242 6.2286 45 1 11.9721 -3.0956 11.2998 46 1 10.4239 -0.1191 7.4270 47 1 9.9065 -0.5825 9.0696 48 1 8.2112 0.8385 7.8477 49 1 7.5790 -0.7508 8.3410 50 1 4.2326 -1.3498 0.7268 51 1 4.1195 -0.8479 -0.9894 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752343003.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:06 Heat of formation + Delta-G solvation = -30.304585 kcal Electronic energy + Delta-G solvation = -29265.694558 eV Core-core repulsion = 25201.022423 eV Total energy + Delta-G solvation = -4064.672134 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.35483 -39.56763 -38.55831 -36.76060 -35.99990 -34.62989 -33.53298 -32.01611 -30.98014 -30.36268 -28.26763 -27.66222 -26.86698 -24.84024 -23.60608 -23.18020 -22.22093 -21.43705 -20.43632 -20.01792 -19.43158 -18.14918 -17.25937 -16.91216 -16.43094 -16.21888 -16.00176 -15.81689 -15.40841 -15.02344 -14.60683 -14.34648 -14.24944 -14.16022 -14.03247 -13.99547 -13.84728 -13.42540 -13.07829 -12.83318 -12.64703 -12.55351 -12.43332 -12.33976 -12.26457 -12.05400 -11.72750 -11.66770 -11.61908 -11.09907 -10.87833 -10.52781 -10.32449 -10.31744 -10.26481 -10.07618 -9.80988 -9.47839 -9.46222 -9.19793 -8.66008 -8.04604 -6.97016 -5.94952 -3.30344 2.11599 2.13546 2.52393 2.67595 3.31791 3.48771 3.52910 3.65736 3.76126 4.05364 4.12403 4.28763 4.53133 4.64724 4.75353 4.79828 4.82199 4.87481 4.96118 5.00215 5.03706 5.04727 5.14894 5.19729 5.31962 5.32073 5.34176 5.45264 5.57441 5.65744 5.71374 5.84508 5.93136 5.96619 5.98852 6.04019 6.05120 6.08402 6.21365 6.37915 6.56044 6.61087 6.63174 6.86179 7.02746 7.38266 7.42523 7.70083 7.74619 7.93891 8.32147 8.92680 9.71486 10.10720 11.21045 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.028123 B = 0.001774 C = 0.001727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.392851 B =15776.233354 C =16209.571669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.620 5.620 3 C 0.116 3.884 4 C -0.127 4.127 5 H 0.129 0.871 6 C 0.519 3.481 7 O -0.532 6.532 8 N -0.724 5.724 9 C 0.120 3.880 10 C -0.128 4.128 11 C 0.058 3.942 12 N -0.534 5.534 13 C 0.039 3.961 14 C 0.152 3.848 15 N -0.609 5.609 16 C -0.259 4.259 17 H 0.085 0.915 18 C 0.021 3.979 19 N -0.909 5.909 20 Si 0.885 3.115 21 H -0.289 1.289 22 H -0.304 1.304 23 H -0.270 1.270 24 C 0.130 3.870 25 C 0.044 3.956 26 C -0.147 4.147 27 C 0.515 3.485 28 O -0.530 6.530 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.403 0.597 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.032 0.968 41 H 0.032 0.968 42 H 0.068 0.932 43 H 0.030 0.970 44 H 0.064 0.936 45 H 0.262 0.738 46 H 0.033 0.967 47 H 0.075 0.925 48 H 0.065 0.935 49 H 0.036 0.964 50 H 0.108 0.892 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.225 12.495 -24.587 32.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.354 5.354 3 C -0.008 4.008 4 C -0.149 4.149 5 H 0.147 0.853 6 C 0.305 3.695 7 O -0.409 6.409 8 N -0.376 5.376 9 C -0.004 4.004 10 C -0.166 4.166 11 C -0.071 4.071 12 N -0.259 5.259 13 C -0.091 4.091 14 C 0.026 3.974 15 N -0.333 5.333 16 C -0.387 4.387 17 H 0.103 0.897 18 C -0.178 4.178 19 N -0.553 5.553 20 Si 0.715 3.285 21 H -0.216 1.216 22 H -0.232 1.232 23 H -0.195 1.195 24 C 0.004 3.996 25 C -0.086 4.086 26 C -0.187 4.187 27 C 0.302 3.698 28 O -0.406 6.406 29 H 0.101 0.899 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.117 0.883 34 H 0.238 0.762 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.050 0.950 41 H 0.051 0.949 42 H 0.086 0.914 43 H 0.048 0.952 44 H 0.083 0.917 45 H 0.072 0.928 46 H 0.051 0.949 47 H 0.093 0.907 48 H 0.084 0.916 49 H 0.054 0.946 50 H 0.126 0.874 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -17.707 12.425 -24.199 32.458 hybrid contribution 0.327 0.450 0.330 0.646 sum -17.380 12.875 -23.870 32.211 Atomic orbital electron populations 1.21581 0.77626 1.03841 1.01758 1.48084 1.06831 1.07142 1.73358 1.22045 0.88330 0.88035 1.02344 1.22362 1.00189 0.98148 0.94177 0.85296 1.20194 0.81766 0.78128 0.89459 1.90728 1.41568 1.43315 1.65247 1.45966 1.20985 1.61331 1.09325 1.21382 0.98032 1.01648 0.79334 1.21802 0.95806 1.01834 0.97152 1.21949 0.91083 1.00033 0.94044 1.61925 1.29133 1.12810 1.22065 1.22702 0.99786 0.87051 0.99517 1.21004 0.91635 0.97820 0.86983 1.44411 1.74431 1.03685 1.10755 1.18931 1.21231 0.91807 1.06773 0.89705 1.25270 0.98316 0.97628 0.96551 1.69839 1.38466 1.39675 1.07279 0.86934 0.79518 0.83865 0.78159 1.21647 1.23185 1.19485 1.21435 0.93040 0.85825 0.99306 1.22632 0.99406 0.99332 0.87204 1.22400 0.95817 0.94960 1.05570 1.20796 0.89103 0.84512 0.75339 1.90751 1.78479 1.21018 1.50348 0.89885 0.91718 0.91907 0.89949 0.88309 0.76242 0.91162 0.91426 0.90987 0.90271 0.90906 0.94967 0.94925 0.91421 0.95250 0.91720 0.92782 0.94945 0.90743 0.91634 0.94606 0.87413 0.86325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.60 11.14 59.85 0.67 1.27 16 2 N -0.62 -4.79 3.33 -180.17 -0.60 -5.39 16 3 C 0.12 0.59 6.74 -3.03 -0.02 0.57 16 4 C -0.13 -0.57 3.54 -90.05 -0.32 -0.89 16 5 H 0.13 0.15 8.14 -51.93 -0.42 -0.28 16 6 C 0.52 4.20 7.16 -10.98 -0.08 4.12 16 7 O -0.53 -6.49 15.54 5.56 0.09 -6.40 16 8 N -0.72 -4.94 5.28 -60.29 -0.32 -5.26 16 9 C 0.12 1.02 5.67 -4.04 -0.02 1.00 16 10 C -0.13 -1.14 5.26 -26.73 -0.14 -1.28 16 11 C 0.06 0.69 4.96 -3.83 -0.02 0.67 16 12 N -0.53 -8.33 4.63 -234.33 -1.08 -9.41 16 13 C 0.04 0.62 5.46 -3.70 -0.02 0.60 16 14 C 0.15 2.97 6.69 -3.60 -0.02 2.94 16 15 N -0.61 -14.54 2.82 -172.01 -0.48 -15.02 16 16 C -0.26 -7.27 10.08 -15.06 -0.15 -7.42 16 17 H 0.09 2.53 8.05 -52.49 -0.42 2.11 16 18 C 0.02 0.61 5.24 -17.43 -0.09 0.52 16 19 N -0.91 -27.94 13.97 55.49 0.78 -27.17 16 20 Si 0.88 22.42 24.30 -169.99 -4.13 18.29 16 21 H -0.29 -7.01 6.58 56.52 0.37 -6.64 16 22 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 23 H -0.27 -6.76 6.61 56.52 0.37 -6.39 16 24 C 0.13 2.85 4.35 -3.61 -0.02 2.83 16 25 C 0.04 0.78 5.62 -3.71 -0.02 0.75 16 26 C -0.15 -0.77 6.39 -26.74 -0.17 -0.94 16 27 C 0.52 4.96 8.02 -10.86 -0.09 4.87 16 28 O -0.53 -7.39 17.35 5.56 0.10 -7.29 16 29 H 0.08 0.63 7.53 -51.93 -0.39 0.24 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.10 0.63 6.97 -51.93 -0.36 0.27 16 34 H 0.40 1.68 8.29 -40.82 -0.34 1.34 16 35 H 0.07 0.64 8.14 -51.92 -0.42 0.21 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.65 6.40 -51.92 -0.33 0.31 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.81 7.97 -51.92 -0.41 0.39 16 40 H 0.03 0.40 8.13 -51.93 -0.42 -0.03 16 41 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.89 6.16 -51.93 -0.32 0.57 16 43 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.06 1.24 7.95 -51.93 -0.41 0.83 16 45 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 46 H 0.03 0.72 6.94 -51.92 -0.36 0.36 16 47 H 0.07 1.77 4.60 -51.93 -0.24 1.54 16 48 H 0.07 1.02 7.99 -51.93 -0.41 0.60 16 49 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.11 0.56 7.51 -51.93 -0.39 0.17 16 51 H 0.12 0.32 8.14 -51.92 -0.42 -0.10 16 LS Contribution 396.22 15.07 5.97 5.97 Total: -1.00 -37.13 396.22 -8.87 -46.00 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -8.66 Total: -3.94 kcal Atomic # 6 Polarization: 10.13 SS G_CDS: -0.51 Total: 9.62 kcal Atomic # 7 Polarization: -60.53 SS G_CDS: -1.71 Total: -62.24 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: 0.18 Total: -13.70 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.13 Total: 18.29 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -37.13 -8.87 -46.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752343003.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.698 kcal (2) G-P(sol) polarization free energy of solvation -37.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds