Wall clock time and date at job start Tue Mar 31 2020 22:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46765 * 124.35217 * 2 1 4 4 C 1.54655 * 105.38446 * 162.85267 * 3 2 1 5 5 H 1.09002 * 110.82067 * 143.78217 * 4 3 2 6 6 C 1.50699 * 111.22421 * 267.57824 * 4 3 2 7 7 O 1.21282 * 120.00372 * 353.88486 * 6 4 3 8 8 N 1.34783 * 119.99911 * 173.87962 * 6 4 3 9 9 C 1.46498 * 119.99909 * 180.02562 * 8 6 4 10 10 C 1.52999 * 109.47078 * 180.02562 * 9 8 6 11 11 C 1.53000 * 109.47430 * 180.02562 * 10 9 8 12 12 N 1.46893 * 109.47544 * 180.02562 * 11 10 9 13 13 C 1.46904 * 110.99626 * 294.30037 * 12 11 10 14 14 C 1.53240 * 109.33934 * 172.74704 * 13 12 11 15 15 N 1.47083 * 108.52244 * 53.82750 * 14 13 12 16 16 C 1.36940 * 120.87822 * 128.83636 * 15 14 13 17 17 H 1.08000 * 120.00179 * 333.49669 * 16 15 14 18 18 C 1.38812 * 119.99269 * 153.50123 * 16 15 14 19 19 N 1.31620 * 119.99677 * 159.48771 * 18 16 15 20 20 Si 1.86798 * 120.00321 * 339.48176 * 18 16 15 21 21 H 1.48499 * 109.47033 * 91.94695 * 20 18 16 22 22 H 1.48503 * 109.46937 * 211.94426 * 20 18 16 23 23 H 1.48503 * 109.47137 * 331.94651 * 20 18 16 24 24 C 1.47073 * 118.23602 * 308.81862 * 15 14 13 25 25 C 1.46895 * 111.00385 * 169.99802 * 12 11 10 26 26 C 1.54629 * 101.68481 * 25.76582 * 4 3 2 27 27 C 1.34420 * 124.34809 * 180.29656 * 2 1 3 28 28 O 1.21275 * 124.94510 * 0.43468 * 27 2 1 29 29 H 1.08997 * 109.47043 * 179.72203 * 1 2 3 30 30 H 1.09000 * 109.47107 * 299.72888 * 1 2 3 31 31 H 1.09000 * 109.46648 * 59.72499 * 1 2 3 32 32 H 1.09002 * 110.24559 * 281.98642 * 3 2 1 33 33 H 1.08998 * 110.24269 * 43.97906 * 3 2 1 34 34 H 0.96999 * 119.99792 * 0.02562 * 8 6 4 35 35 H 1.09007 * 109.46829 * 299.99977 * 9 8 6 36 36 H 1.08994 * 109.47320 * 60.00254 * 9 8 6 37 37 H 1.09007 * 109.46942 * 299.99504 * 10 9 8 38 38 H 1.08998 * 109.47613 * 59.99854 * 10 9 8 39 39 H 1.09007 * 109.46586 * 299.99640 * 11 10 9 40 40 H 1.09003 * 109.47332 * 59.99144 * 11 10 9 41 41 H 1.09005 * 109.49275 * 292.70278 * 13 12 11 42 42 H 1.08997 * 109.49759 * 52.78655 * 13 12 11 43 43 H 1.08997 * 109.62927 * 294.11643 * 14 13 12 44 44 H 1.09006 * 109.62672 * 173.53658 * 14 13 12 45 45 H 0.97004 * 120.00341 * 179.97438 * 19 18 16 46 46 H 1.09010 * 109.62703 * 291.47082 * 24 15 14 47 47 H 1.09004 * 109.63046 * 170.89557 * 24 15 14 48 48 H 1.08997 * 109.49110 * 307.21398 * 25 12 11 49 49 H 1.08998 * 109.49184 * 67.26184 * 25 12 11 50 50 H 1.08998 * 110.48856 * 216.30818 * 26 4 3 51 51 H 1.09007 * 110.48340 * 93.66680 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2932 1.2117 0.0000 4 6 3.7010 0.7464 0.4396 5 1 4.4754 1.3016 -0.0898 6 6 3.8759 0.8715 1.9312 7 8 3.0121 1.3967 2.6012 8 7 4.9923 0.3996 2.5208 9 6 5.1621 0.5207 3.9708 10 6 6.5046 -0.0887 4.3798 11 6 6.6817 0.0372 5.8943 12 7 7.9709 -0.5472 6.2869 13 6 7.9874 -1.9962 6.0451 14 6 9.3996 -2.5362 6.2944 15 7 9.8260 -2.1254 7.6408 16 6 10.3192 -3.0410 8.5317 17 1 10.0252 -4.0777 8.4591 18 6 11.1969 -2.6365 9.5282 19 7 11.3585 -3.3780 10.6035 20 14 12.1488 -1.0399 9.3428 21 1 11.3837 0.0680 9.9691 22 1 13.4684 -1.1700 10.0113 23 1 12.3509 -0.7487 7.9008 24 6 9.7090 -0.7052 8.0047 25 6 8.2847 -0.2372 7.6880 26 6 3.6898 -0.7379 0.0063 27 6 2.2235 -1.1098 -0.0057 28 8 1.7947 -2.2441 -0.0192 29 1 -0.3633 -1.0276 -0.0050 30 1 -0.3633 0.5096 0.8924 31 1 -0.3632 0.5181 -0.8875 32 1 2.3307 1.6429 -1.0004 33 1 1.8985 1.9383 0.7101 34 1 5.6833 -0.0203 1.9849 35 1 5.1404 1.5735 4.2525 36 1 4.3539 -0.0075 4.4766 37 1 6.5266 -1.1415 4.0981 38 1 7.3127 0.4398 3.8740 39 1 6.6595 1.0899 6.1764 40 1 5.8735 -0.4915 6.3998 41 1 7.2862 -2.4857 6.7210 42 1 7.6984 -2.1961 5.0133 43 1 10.0847 -2.1262 5.5524 44 1 9.3925 -3.6242 6.2286 45 1 11.9721 -3.0956 11.2998 46 1 10.4239 -0.1191 7.4270 47 1 9.9065 -0.5825 9.0696 48 1 8.2112 0.8385 7.8477 49 1 7.5790 -0.7508 8.3410 50 1 4.2326 -1.3498 0.7268 51 1 4.1195 -0.8479 -0.9894 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752343003.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:05 Heat of formation + Delta-G solvation = -60.353012 kcal Electronic energy + Delta-G solvation = -29266.997555 eV Core-core repulsion = 25201.022423 eV Total energy + Delta-G solvation = -4065.975132 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.91601 -40.28335 -39.89619 -37.50537 -37.03749 -35.86966 -34.17010 -33.68778 -32.27127 -31.81474 -28.92858 -28.60940 -27.74537 -25.96401 -25.08556 -24.18863 -23.49019 -22.34436 -21.18574 -20.87475 -20.61132 -18.85095 -18.64393 -17.81565 -17.47338 -17.00009 -16.88555 -16.67058 -16.43404 -16.03098 -15.94039 -15.76950 -15.53344 -15.40602 -14.85473 -14.82965 -14.60294 -14.51340 -14.38405 -13.99291 -13.72551 -13.46029 -13.33845 -13.18950 -13.07618 -12.93285 -12.85829 -12.67477 -12.50679 -12.43152 -12.25806 -12.17812 -11.88827 -11.61472 -11.58781 -11.37552 -11.02523 -10.89474 -10.71342 -10.11560 -9.76819 -9.37648 -8.89892 -8.17291 -5.48923 1.30126 1.42052 1.46981 1.52029 1.55573 2.02239 2.13815 2.41524 2.89738 3.07207 3.24245 3.32883 3.36936 3.67370 3.88668 3.94432 4.04251 4.15660 4.22591 4.25620 4.31912 4.38105 4.41272 4.45967 4.50551 4.56366 4.61052 4.64181 4.65355 4.70488 4.75266 4.78486 4.80313 4.82419 4.83594 4.88528 4.99034 5.02484 5.18522 5.25344 5.31400 5.43441 5.47422 5.82145 6.05621 6.07843 6.10272 6.22289 6.52526 6.89492 7.05999 7.21457 7.60748 8.03009 9.02575 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.028123 B = 0.001774 C = 0.001727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.392851 B =15776.233354 C =16209.571669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.624 5.624 3 C 0.111 3.889 4 C -0.112 4.112 5 H 0.177 0.823 6 C 0.512 3.488 7 O -0.581 6.581 8 N -0.714 5.714 9 C 0.127 3.873 10 C -0.112 4.112 11 C 0.057 3.943 12 N -0.534 5.534 13 C 0.049 3.951 14 C 0.145 3.855 15 N -0.625 5.625 16 C -0.250 4.250 17 H 0.050 0.950 18 C -0.038 4.038 19 N -0.958 5.958 20 Si 0.952 3.048 21 H -0.272 1.272 22 H -0.311 1.311 23 H -0.262 1.262 24 C 0.125 3.875 25 C 0.052 3.948 26 C -0.136 4.136 27 C 0.496 3.504 28 O -0.589 6.589 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.119 0.881 33 H 0.085 0.915 34 H 0.419 0.581 35 H 0.066 0.934 36 H 0.049 0.951 37 H 0.076 0.924 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.026 0.974 41 H 0.014 0.986 42 H 0.106 0.894 43 H 0.041 0.959 44 H 0.058 0.942 45 H 0.262 0.738 46 H 0.038 0.962 47 H 0.051 0.949 48 H 0.095 0.905 49 H 0.019 0.981 50 H 0.108 0.892 51 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.882 15.416 -27.852 36.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.356 5.356 3 C -0.011 4.011 4 C -0.133 4.133 5 H 0.195 0.805 6 C 0.299 3.701 7 O -0.460 6.460 8 N -0.367 5.367 9 C 0.002 3.998 10 C -0.150 4.150 11 C -0.071 4.071 12 N -0.259 5.259 13 C -0.080 4.080 14 C 0.020 3.980 15 N -0.350 5.350 16 C -0.379 4.379 17 H 0.068 0.932 18 C -0.233 4.233 19 N -0.605 5.605 20 Si 0.780 3.220 21 H -0.199 1.199 22 H -0.240 1.240 23 H -0.186 1.186 24 C -0.001 4.001 25 C -0.078 4.078 26 C -0.176 4.176 27 C 0.285 3.715 28 O -0.470 6.470 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.107 0.893 32 H 0.137 0.863 33 H 0.103 0.897 34 H 0.257 0.743 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.094 0.906 38 H 0.109 0.891 39 H 0.103 0.897 40 H 0.044 0.956 41 H 0.033 0.967 42 H 0.124 0.876 43 H 0.059 0.941 44 H 0.077 0.923 45 H 0.070 0.930 46 H 0.056 0.944 47 H 0.069 0.931 48 H 0.113 0.887 49 H 0.038 0.962 50 H 0.126 0.874 51 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -17.367 15.401 -27.527 36.007 hybrid contribution 0.103 -0.483 1.313 1.403 sum -17.265 14.918 -26.213 34.753 Atomic orbital electron populations 1.21658 0.77630 1.02992 1.03071 1.48364 1.07414 1.07865 1.72004 1.22302 0.88122 0.86636 1.04052 1.22446 1.01150 0.98133 0.91616 0.80543 1.20903 0.81105 0.77072 0.90991 1.90717 1.43150 1.45522 1.66633 1.45868 1.21256 1.60811 1.08721 1.21166 0.97152 1.01076 0.80400 1.21640 0.96189 1.02279 0.94926 1.22049 0.88815 1.00272 0.96005 1.61918 1.31445 1.12258 1.20275 1.22564 0.96776 0.87341 1.01309 1.21208 0.93884 0.97927 0.84955 1.44563 1.74521 1.03987 1.11928 1.18874 1.20498 0.91370 1.07204 0.93183 1.25925 0.99579 1.01502 0.96293 1.69975 1.39819 1.42278 1.08403 0.85848 0.77449 0.80323 0.78343 1.19873 1.23976 1.18611 1.21463 0.95881 0.84704 0.98004 1.22442 0.96137 1.00723 0.88465 1.22444 0.92530 0.95063 1.07589 1.21670 0.91317 0.84016 0.74500 1.90711 1.79837 1.23219 1.53224 0.91836 0.91663 0.89292 0.86280 0.89676 0.74347 0.91549 0.93289 0.90561 0.89066 0.89686 0.95552 0.96717 0.87594 0.94113 0.92333 0.92959 0.94393 0.93057 0.88713 0.96250 0.87356 0.82876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.11 11.14 127.77 1.42 2.53 16 2 N -0.62 -8.85 3.33 -842.54 -2.81 -11.66 16 3 C 0.11 0.81 6.74 86.89 0.59 1.40 16 4 C -0.11 -0.56 3.54 -10.42 -0.04 -0.60 16 5 H 0.18 -0.72 8.14 -2.39 -0.02 -0.74 16 6 C 0.51 6.97 7.16 87.66 0.63 7.60 16 7 O -0.58 -13.54 15.54 -3.03 -0.05 -13.59 16 8 N -0.71 -7.45 5.28 -463.06 -2.45 -9.90 16 9 C 0.13 1.84 5.67 86.38 0.49 2.33 16 10 C -0.11 -1.58 5.26 30.59 0.16 -1.42 16 11 C 0.06 1.16 4.96 86.30 0.43 1.59 16 12 N -0.53 -15.01 4.63 -895.27 -4.14 -19.16 16 13 C 0.05 1.46 5.46 86.38 0.47 1.94 16 14 C 0.15 5.48 6.69 86.35 0.58 6.06 16 15 N -0.62 -29.62 2.82 -698.12 -1.97 -31.58 16 16 C -0.25 -14.37 10.08 84.03 0.85 -13.52 16 17 H 0.05 3.15 8.05 -2.91 -0.02 3.12 16 18 C -0.04 -2.27 5.24 84.86 0.44 -1.83 16 19 N -0.96 -60.84 13.97 21.65 0.30 -60.54 16 20 Si 0.95 46.81 24.30 68.60 1.67 48.47 16 21 H -0.27 -12.52 6.58 99.48 0.65 -11.87 16 22 H -0.31 -15.52 7.11 99.48 0.71 -14.82 16 23 H -0.26 -12.36 6.61 99.48 0.66 -11.70 16 24 C 0.12 5.27 4.35 86.35 0.38 5.65 16 25 C 0.05 1.73 5.62 86.38 0.49 2.22 16 26 C -0.14 -0.97 6.39 30.59 0.20 -0.77 16 27 C 0.50 9.09 8.02 87.90 0.71 9.79 16 28 O -0.59 -16.90 17.35 -3.01 -0.05 -16.95 16 29 H 0.06 1.04 7.53 -2.39 -0.02 1.02 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.12 0.05 8.14 -2.39 -0.02 0.04 16 33 H 0.08 0.93 6.97 -2.39 -0.02 0.91 16 34 H 0.42 1.68 8.29 -92.71 -0.77 0.91 16 35 H 0.07 1.04 8.14 -2.38 -0.02 1.03 16 36 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.08 1.04 6.40 -2.38 -0.02 1.03 16 38 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.08 1.58 7.97 -2.38 -0.02 1.56 16 40 H 0.03 0.59 8.13 -2.39 -0.02 0.57 16 41 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 42 H 0.11 2.37 6.16 -2.39 -0.01 2.36 16 43 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.06 2.24 7.95 -2.38 -0.02 2.22 16 45 H 0.26 15.75 8.31 -92.70 -0.77 14.98 16 46 H 0.04 1.58 6.94 -2.38 -0.02 1.56 16 47 H 0.05 2.40 4.60 -2.39 -0.01 2.38 16 48 H 0.09 2.62 7.99 -2.39 -0.02 2.60 16 49 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 50 H 0.11 0.80 7.51 -2.39 -0.02 0.79 16 51 H 0.15 0.08 8.14 -2.38 -0.02 0.06 16 Total: -1.00 -86.28 396.22 -1.66 -87.94 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: 0.06 Total: 4.01 kcal Atomic # 6 Polarization: 15.18 SS G_CDS: 7.78 Total: 22.96 kcal Atomic # 7 Polarization: -121.78 SS G_CDS: -11.06 Total: -132.84 kcal Atomic # 8 Polarization: -30.44 SS G_CDS: -0.10 Total: -30.54 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 1.67 Total: 48.47 kcal Total: -86.28 -1.66 -87.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752343003.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.590 kcal (2) G-P(sol) polarization free energy of solvation -86.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds