Wall clock time and date at job start Tue Mar 31 2020 22:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.47838 * 110.99753 * 2 1 4 4 C 1.54908 * 104.79770 * 146.36230 * 3 2 1 5 5 C 1.55134 * 101.65148 * 322.92723 * 4 3 2 6 6 H 1.09004 * 110.85842 * 277.20117 * 5 4 3 7 7 C 1.53002 * 110.70727 * 154.03643 * 5 4 3 8 8 C 1.50695 * 109.47004 * 179.97438 * 7 5 4 9 9 O 1.21274 * 120.00413 * 0.27039 * 8 7 5 10 10 N 1.34784 * 119.99635 * 179.97438 * 8 7 5 11 11 C 1.46499 * 119.99971 * 179.97438 * 10 8 7 12 12 C 1.52992 * 109.47267 * 180.02562 * 11 10 8 13 13 C 1.53937 * 113.73549 * 271.72886 * 12 11 10 14 14 N 1.47957 * 86.18422 * 221.92065 * 13 12 11 15 15 C 1.46894 * 111.00384 * 137.57702 * 14 13 12 16 16 C 1.50701 * 109.47054 * 90.63946 * 15 14 13 17 17 O 1.21296 * 119.99851 * 0.02562 * 16 15 14 18 18 N 1.34777 * 120.00134 * 180.02562 * 16 15 14 19 19 C 1.37101 * 119.99604 * 180.02562 * 18 16 15 20 20 H 1.07995 * 120.00447 * 359.97438 * 19 18 16 21 21 C 1.38954 * 119.99814 * 180.02562 * 19 18 16 22 22 N 1.31419 * 119.99849 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00077 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47160 * 59.99455 * 23 21 19 25 25 H 1.48506 * 109.47032 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.46999 * 299.99378 * 23 21 19 27 27 C 1.47964 * 90.76224 * 24.68917 * 14 13 12 28 28 C 1.47441 * 110.99592 * 120.83600 * 2 1 3 29 29 H 1.09003 * 109.47287 * 299.16120 * 1 2 3 30 30 H 1.09002 * 109.46897 * 59.16269 * 1 2 3 31 31 H 1.08999 * 109.46918 * 179.15565 * 1 2 3 32 32 H 1.09006 * 110.37527 * 265.19121 * 3 2 1 33 33 H 1.09002 * 110.37753 * 27.41986 * 3 2 1 34 34 H 1.09007 * 110.98763 * 204.83556 * 4 3 2 35 35 H 1.08995 * 110.98833 * 81.01901 * 4 3 2 36 36 H 1.09005 * 109.47089 * 59.94528 * 7 5 4 37 37 H 1.09002 * 109.46787 * 299.94870 * 7 5 4 38 38 H 0.96999 * 120.00044 * 0.02562 * 10 8 7 39 39 H 1.09004 * 109.47024 * 300.00310 * 11 10 8 40 40 H 1.09005 * 109.47136 * 59.99926 * 11 10 8 41 41 H 1.09000 * 112.94198 * 43.43482 * 12 11 10 42 42 H 1.09006 * 113.75481 * 336.23935 * 13 12 11 43 43 H 1.08993 * 113.76230 * 107.59845 * 13 12 11 44 44 H 1.09005 * 109.47740 * 210.64002 * 15 14 13 45 45 H 1.09000 * 109.47192 * 330.64570 * 15 14 13 46 46 H 0.96994 * 119.99975 * 0.02562 * 18 16 15 47 47 H 0.96994 * 119.99634 * 180.02562 * 22 21 19 48 48 H 1.09000 * 113.75868 * 220.99829 * 27 14 13 49 49 H 1.09000 * 113.86108 * 89.64417 * 27 14 13 50 50 H 1.09008 * 109.88371 * 117.34015 * 28 2 1 51 51 H 1.08996 * 110.02764 * 356.23017 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9988 1.3802 0.0000 4 6 3.3047 1.3028 0.8296 5 6 2.9158 0.2823 1.9315 6 1 2.3752 0.7726 2.7412 7 6 4.1569 -0.4336 2.4682 8 6 3.7480 -1.4160 3.5352 9 8 2.5786 -1.5357 3.8334 10 7 4.6815 -2.1660 4.1541 11 6 4.2841 -3.1207 5.1918 12 6 5.5251 -3.8366 5.7283 13 6 5.8983 -5.1048 4.9396 14 7 6.1611 -5.7268 6.2561 15 6 5.6332 -7.0967 6.3061 16 6 6.6990 -8.0624 5.8561 17 8 7.7911 -7.6500 5.5267 18 7 6.4387 -9.3843 5.8197 19 6 7.4086 -10.2629 5.4108 20 1 8.3809 -9.8957 5.1175 21 6 7.1401 -11.6257 5.3727 22 7 5.9567 -12.0725 5.7291 23 14 8.4612 -12.8227 4.8149 24 1 9.6389 -12.7139 5.7130 25 1 7.9274 -14.2076 4.8648 26 1 8.8678 -12.4982 3.4240 27 6 5.2346 -4.7774 6.9117 28 6 1.9973 -0.7056 1.1819 29 1 -0.3634 0.5008 0.8974 30 1 -0.3633 0.5268 -0.8824 31 1 -0.3633 -1.0276 -0.0151 32 1 2.2148 1.7038 -1.0183 33 1 1.2880 2.0596 0.4706 34 1 3.5494 2.2722 1.2640 35 1 4.1301 0.9282 0.2243 36 1 4.8441 0.2988 2.8920 37 1 4.6497 -0.9658 1.6544 38 1 5.6164 -2.0731 3.9128 39 1 3.7917 -2.5885 6.0058 40 1 3.5966 -3.8527 4.7681 41 1 6.3639 -3.1621 5.8999 42 1 5.0608 -5.5504 4.4027 43 1 6.7890 -4.9916 4.3218 44 1 5.3353 -7.3344 7.3273 45 1 4.7686 -7.1771 5.6473 46 1 5.5653 -9.7141 6.0827 47 1 5.7694 -13.0238 5.7028 48 1 5.5953 -4.4024 7.8695 49 1 4.2026 -5.1257 6.9528 50 1 2.5697 -1.5784 0.8675 51 1 1.1771 -1.0141 1.8300 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753413853.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:24 Heat of formation + Delta-G solvation = -34.997597 kcal Electronic energy + Delta-G solvation = -28552.632650 eV Core-core repulsion = 24487.757012 eV Total energy + Delta-G solvation = -4064.875639 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.52452 -39.91995 -38.81615 -37.72137 -34.97452 -33.86536 -33.70129 -31.39639 -30.96153 -30.22241 -28.14060 -26.91957 -26.07656 -25.35652 -24.62176 -22.57770 -21.44242 -21.20199 -20.40776 -19.56402 -19.16020 -17.87637 -17.27695 -16.71016 -16.51124 -16.14549 -15.72954 -15.58794 -15.18773 -14.93544 -14.87941 -14.46571 -14.31006 -14.05901 -13.69302 -13.65394 -13.51617 -13.23763 -13.05566 -12.86174 -12.59684 -12.29475 -12.14379 -11.92842 -11.72100 -11.63371 -11.59043 -11.45849 -11.32267 -11.16247 -11.05367 -11.02192 -10.70624 -10.67728 -10.42967 -10.19322 -10.00873 -9.47339 -9.30825 -8.73043 -8.66459 -8.16481 -7.94109 -6.39679 -3.80501 2.40705 2.89399 3.21189 3.26575 3.30988 3.68305 3.88988 3.94661 4.10660 4.21686 4.24200 4.34021 4.43552 4.57319 4.61055 4.86173 4.95120 4.96907 5.03263 5.05534 5.07955 5.11850 5.21503 5.24710 5.28406 5.34238 5.37011 5.38511 5.48529 5.50384 5.51989 5.54156 5.67406 5.68346 5.70728 5.75169 5.76214 5.92709 5.93966 6.09277 6.25692 6.29004 6.57777 6.60777 6.70936 7.16117 7.24369 7.56641 7.97959 8.07887 8.64352 9.20316 9.56869 10.09383 10.78142 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.016829 B = 0.001657 C = 0.001582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.434713 B =16896.484365 C =17692.335224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.538 5.538 3 C 0.040 3.960 4 C -0.127 4.127 5 C -0.092 4.092 6 H 0.082 0.918 7 C -0.132 4.132 8 C 0.510 3.490 9 O -0.541 6.541 10 N -0.728 5.728 11 C 0.128 3.872 12 C -0.131 4.131 13 C 0.016 3.984 14 N -0.449 5.449 15 C 0.010 3.990 16 C 0.446 3.554 17 O -0.576 6.576 18 N -0.567 5.567 19 C -0.299 4.299 20 H 0.102 0.898 21 C 0.021 3.979 22 N -0.903 5.903 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.274 1.274 27 C 0.008 3.992 28 C 0.051 3.949 29 H 0.027 0.973 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.046 0.954 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.403 0.597 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.105 0.895 42 H 0.069 0.931 43 H 0.091 0.909 44 H 0.088 0.912 45 H 0.058 0.942 46 H 0.391 0.609 47 H 0.272 0.728 48 H 0.091 0.909 49 H 0.071 0.929 50 H 0.074 0.926 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.119 27.010 -6.441 29.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.262 5.262 3 C -0.087 4.087 4 C -0.165 4.165 5 C -0.112 4.112 6 H 0.101 0.899 7 C -0.172 4.172 8 C 0.297 3.703 9 O -0.418 6.418 10 N -0.380 5.380 11 C 0.004 3.996 12 C -0.150 4.150 13 C -0.113 4.113 14 N -0.171 5.171 15 C -0.122 4.122 16 C 0.231 3.769 17 O -0.460 6.460 18 N -0.204 5.204 19 C -0.428 4.428 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.545 5.545 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.121 4.121 28 C -0.077 4.077 29 H 0.045 0.955 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.064 0.936 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.114 0.886 37 H 0.117 0.883 38 H 0.237 0.763 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.124 0.876 42 H 0.087 0.913 43 H 0.109 0.891 44 H 0.106 0.894 45 H 0.076 0.924 46 H 0.224 0.776 47 H 0.081 0.919 48 H 0.109 0.891 49 H 0.089 0.911 50 H 0.092 0.908 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.488 26.615 -6.647 28.716 hybrid contribution -0.655 -0.657 0.337 0.987 sum -9.144 25.958 -6.309 28.236 Atomic orbital electron populations 1.22536 0.87694 1.02232 1.00409 1.63590 1.08040 1.14156 1.40404 1.23048 0.95505 0.89728 1.00456 1.22799 0.97963 0.99104 0.96592 1.22127 0.95309 0.96091 0.97654 0.89931 1.21701 0.99432 0.98090 0.97963 1.20708 0.85847 0.81334 0.82424 1.90700 1.18098 1.67959 1.65026 1.46053 1.10766 1.41032 1.40193 1.21428 0.96452 0.91438 0.90268 1.23287 0.97803 0.96535 0.97360 1.24043 1.01192 0.92670 0.93401 1.68379 1.41385 0.99984 1.07350 1.22483 0.96580 0.91071 1.02097 1.19690 0.89224 0.83022 0.84946 1.90515 1.24711 1.77770 1.52980 1.41873 1.15222 1.04558 1.58765 1.19646 0.95488 0.86854 1.40861 0.88028 1.25257 0.97390 0.97746 0.97598 1.69607 1.21024 1.15540 1.48287 0.85917 0.80288 0.78686 0.79317 1.19912 1.20991 1.19944 1.23955 0.96660 0.93243 0.98273 1.22873 0.98554 0.96688 0.89567 0.95462 0.91526 0.91285 0.90208 0.93609 0.90656 0.90264 0.88613 0.88344 0.76306 0.91221 0.91272 0.87644 0.91310 0.89065 0.89412 0.92442 0.77558 0.91865 0.89069 0.91119 0.90786 0.91595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.12 60.07 0.55 0.70 16 2 N -0.54 -4.73 5.44 -239.51 -1.30 -6.03 16 3 C 0.04 0.27 6.73 -2.30 -0.02 0.26 16 4 C -0.13 -0.73 6.52 -24.60 -0.16 -0.89 16 5 C -0.09 -0.68 2.55 -88.80 -0.23 -0.91 16 6 H 0.08 0.71 8.04 -51.93 -0.42 0.29 16 7 C -0.13 -0.82 5.09 -27.88 -0.14 -0.96 16 8 C 0.51 4.76 7.62 -10.98 -0.08 4.68 16 9 O -0.54 -7.09 14.84 5.56 0.08 -7.01 16 10 N -0.73 -5.86 5.56 -60.30 -0.33 -6.20 16 11 C 0.13 1.19 5.53 -4.05 -0.02 1.17 16 12 C -0.13 -1.30 3.94 -89.69 -0.35 -1.65 16 13 C 0.02 0.21 7.51 -2.77 -0.02 0.19 16 14 N -0.45 -7.23 5.65 -239.71 -1.35 -8.59 16 15 C 0.01 0.17 5.28 -4.98 -0.03 0.15 16 16 C 0.45 10.73 7.83 -10.98 -0.09 10.64 16 17 O -0.58 -15.98 16.01 5.54 0.09 -15.89 16 18 N -0.57 -14.58 5.29 -10.96 -0.06 -14.64 16 19 C -0.30 -8.44 9.68 -14.93 -0.14 -8.59 16 20 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 21 C 0.02 0.58 5.50 -17.46 -0.10 0.49 16 22 N -0.90 -24.78 13.05 55.50 0.72 -24.06 16 23 Si 0.93 21.24 29.55 -169.99 -5.02 16.22 16 24 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 27 C 0.01 0.10 7.51 -2.76 -0.02 0.07 16 28 C 0.05 0.47 5.48 -2.84 -0.02 0.45 16 29 H 0.03 0.21 8.10 -51.93 -0.42 -0.22 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.05 0.30 7.78 -51.93 -0.40 -0.11 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.08 0.43 8.05 -51.93 -0.42 0.01 16 36 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.10 0.51 8.06 -51.93 -0.42 0.09 16 38 H 0.40 2.33 8.47 -40.82 -0.35 1.98 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.74 7.84 -51.93 -0.41 0.33 16 41 H 0.11 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.07 0.92 7.23 -51.93 -0.38 0.54 16 43 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 44 H 0.09 1.42 8.08 -51.93 -0.42 1.00 16 45 H 0.06 0.92 7.38 -51.93 -0.38 0.54 16 46 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 47 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 48 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 49 H 0.07 0.73 7.88 -51.93 -0.41 0.32 16 50 H 0.07 0.74 7.77 -51.92 -0.40 0.33 16 51 H 0.07 0.72 7.11 -51.93 -0.37 0.35 16 LS Contribution 411.03 15.07 6.19 6.19 Total: -1.00 -34.64 411.03 -10.68 -45.32 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -8.83 Total: 8.88 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: -0.87 Total: 5.82 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: -2.33 Total: -59.52 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: 0.17 Total: -22.90 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -34.64 -10.68 -45.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753413853.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.319 kcal (2) G-P(sol) polarization free energy of solvation -34.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds