Wall clock time and date at job start Tue Mar 31 2020 22:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.47838 * 110.99753 * 2 1 4 4 C 1.54908 * 104.79770 * 146.36230 * 3 2 1 5 5 C 1.55134 * 101.65148 * 322.92723 * 4 3 2 6 6 H 1.09004 * 110.85842 * 277.20117 * 5 4 3 7 7 C 1.53002 * 110.70727 * 154.03643 * 5 4 3 8 8 C 1.50695 * 109.47004 * 179.97438 * 7 5 4 9 9 O 1.21274 * 120.00413 * 0.27039 * 8 7 5 10 10 N 1.34784 * 119.99635 * 179.97438 * 8 7 5 11 11 C 1.46499 * 119.99971 * 179.97438 * 10 8 7 12 12 C 1.52992 * 109.47267 * 180.02562 * 11 10 8 13 13 C 1.53937 * 113.73549 * 271.72886 * 12 11 10 14 14 N 1.47957 * 86.18422 * 221.92065 * 13 12 11 15 15 C 1.46894 * 111.00384 * 137.57702 * 14 13 12 16 16 C 1.50701 * 109.47054 * 90.63946 * 15 14 13 17 17 O 1.21296 * 119.99851 * 0.02562 * 16 15 14 18 18 N 1.34777 * 120.00134 * 180.02562 * 16 15 14 19 19 C 1.37101 * 119.99604 * 180.02562 * 18 16 15 20 20 H 1.07995 * 120.00447 * 359.97438 * 19 18 16 21 21 C 1.38954 * 119.99814 * 180.02562 * 19 18 16 22 22 N 1.31419 * 119.99849 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00077 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47160 * 59.99455 * 23 21 19 25 25 H 1.48506 * 109.47032 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.46999 * 299.99378 * 23 21 19 27 27 C 1.47964 * 90.76224 * 24.68917 * 14 13 12 28 28 C 1.47441 * 110.99592 * 120.83600 * 2 1 3 29 29 H 1.09003 * 109.47287 * 299.16120 * 1 2 3 30 30 H 1.09002 * 109.46897 * 59.16269 * 1 2 3 31 31 H 1.08999 * 109.46918 * 179.15565 * 1 2 3 32 32 H 1.09006 * 110.37527 * 265.19121 * 3 2 1 33 33 H 1.09002 * 110.37753 * 27.41986 * 3 2 1 34 34 H 1.09007 * 110.98763 * 204.83556 * 4 3 2 35 35 H 1.08995 * 110.98833 * 81.01901 * 4 3 2 36 36 H 1.09005 * 109.47089 * 59.94528 * 7 5 4 37 37 H 1.09002 * 109.46787 * 299.94870 * 7 5 4 38 38 H 0.96999 * 120.00044 * 0.02562 * 10 8 7 39 39 H 1.09004 * 109.47024 * 300.00310 * 11 10 8 40 40 H 1.09005 * 109.47136 * 59.99926 * 11 10 8 41 41 H 1.09000 * 112.94198 * 43.43482 * 12 11 10 42 42 H 1.09006 * 113.75481 * 336.23935 * 13 12 11 43 43 H 1.08993 * 113.76230 * 107.59845 * 13 12 11 44 44 H 1.09005 * 109.47740 * 210.64002 * 15 14 13 45 45 H 1.09000 * 109.47192 * 330.64570 * 15 14 13 46 46 H 0.96994 * 119.99975 * 0.02562 * 18 16 15 47 47 H 0.96994 * 119.99634 * 180.02562 * 22 21 19 48 48 H 1.09000 * 113.75868 * 220.99829 * 27 14 13 49 49 H 1.09000 * 113.86108 * 89.64417 * 27 14 13 50 50 H 1.09008 * 109.88371 * 117.34015 * 28 2 1 51 51 H 1.08996 * 110.02764 * 356.23017 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9988 1.3802 0.0000 4 6 3.3047 1.3028 0.8296 5 6 2.9158 0.2823 1.9315 6 1 2.3752 0.7726 2.7412 7 6 4.1569 -0.4336 2.4682 8 6 3.7480 -1.4160 3.5352 9 8 2.5786 -1.5357 3.8334 10 7 4.6815 -2.1660 4.1541 11 6 4.2841 -3.1207 5.1918 12 6 5.5251 -3.8366 5.7283 13 6 5.8983 -5.1048 4.9396 14 7 6.1611 -5.7268 6.2561 15 6 5.6332 -7.0967 6.3061 16 6 6.6990 -8.0624 5.8561 17 8 7.7911 -7.6500 5.5267 18 7 6.4387 -9.3843 5.8197 19 6 7.4086 -10.2629 5.4108 20 1 8.3809 -9.8957 5.1175 21 6 7.1401 -11.6257 5.3727 22 7 5.9567 -12.0725 5.7291 23 14 8.4612 -12.8227 4.8149 24 1 9.6389 -12.7139 5.7130 25 1 7.9274 -14.2076 4.8648 26 1 8.8678 -12.4982 3.4240 27 6 5.2346 -4.7774 6.9117 28 6 1.9973 -0.7056 1.1819 29 1 -0.3634 0.5008 0.8974 30 1 -0.3633 0.5268 -0.8824 31 1 -0.3633 -1.0276 -0.0151 32 1 2.2148 1.7038 -1.0183 33 1 1.2880 2.0596 0.4706 34 1 3.5494 2.2722 1.2640 35 1 4.1301 0.9282 0.2243 36 1 4.8441 0.2988 2.8920 37 1 4.6497 -0.9658 1.6544 38 1 5.6164 -2.0731 3.9128 39 1 3.7917 -2.5885 6.0058 40 1 3.5966 -3.8527 4.7681 41 1 6.3639 -3.1621 5.8999 42 1 5.0608 -5.5504 4.4027 43 1 6.7890 -4.9916 4.3218 44 1 5.3353 -7.3344 7.3273 45 1 4.7686 -7.1771 5.6473 46 1 5.5653 -9.7141 6.0827 47 1 5.7694 -13.0238 5.7028 48 1 5.5953 -4.4024 7.8695 49 1 4.2026 -5.1257 6.9528 50 1 2.5697 -1.5784 0.8675 51 1 1.1771 -1.0141 1.8300 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753413853.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:23 Heat of formation + Delta-G solvation = -63.741482 kcal Electronic energy + Delta-G solvation = -28553.879079 eV Core-core repulsion = 24487.757012 eV Total energy + Delta-G solvation = -4066.122067 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.43666 -40.84079 -39.70011 -39.35561 -36.01721 -35.71431 -34.30757 -33.31398 -32.17366 -30.88388 -29.08030 -27.88476 -27.09213 -26.67781 -25.71256 -23.78007 -22.02875 -21.87202 -21.14172 -20.99692 -20.38582 -19.88676 -18.04491 -17.80185 -17.41582 -17.21856 -16.62331 -16.59535 -16.47785 -16.21538 -16.00338 -15.82774 -15.39506 -15.11507 -14.92235 -14.58180 -14.45198 -14.21937 -13.97699 -13.70707 -13.67808 -13.55005 -13.47157 -12.97889 -12.72034 -12.67340 -12.53690 -12.45044 -12.37045 -12.25935 -12.13596 -12.09598 -11.84012 -11.71502 -11.65683 -11.59159 -11.49667 -10.78409 -10.37757 -10.05807 -10.01881 -9.63934 -9.31532 -8.47031 -5.96112 1.39194 1.40619 1.51881 1.70404 2.05316 2.22067 2.28541 2.78501 3.08651 3.18974 3.32813 3.45422 3.57689 3.67684 3.71767 3.88071 4.01728 4.17664 4.20772 4.27085 4.35077 4.38186 4.39833 4.45327 4.47594 4.51470 4.53422 4.55535 4.63836 4.69701 4.70927 4.81705 4.84179 4.85746 4.89125 4.93425 4.99522 5.11683 5.15271 5.24132 5.37480 5.39213 5.42998 5.51174 5.89962 5.98671 6.08654 6.08848 6.59939 6.60579 7.12303 7.31054 7.55959 8.12307 8.70184 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.016829 B = 0.001657 C = 0.001582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.434713 B =16896.484365 C =17692.335224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.553 5.553 3 C 0.035 3.965 4 C -0.117 4.117 5 C -0.090 4.090 6 H 0.068 0.932 7 C -0.124 4.124 8 C 0.506 3.494 9 O -0.584 6.584 10 N -0.720 5.720 11 C 0.136 3.864 12 C -0.101 4.101 13 C 0.009 3.991 14 N -0.484 5.484 15 C 0.023 3.977 16 C 0.441 3.559 17 O -0.618 6.618 18 N -0.577 5.577 19 C -0.335 4.335 20 H 0.078 0.922 21 C -0.014 4.014 22 N -0.921 5.921 23 Si 0.994 3.006 24 H -0.272 1.272 25 H -0.270 1.270 26 H -0.272 1.272 27 C 0.012 3.988 28 C 0.053 3.947 29 H 0.024 0.976 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.088 0.912 33 H 0.047 0.953 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.125 0.875 37 H 0.113 0.887 38 H 0.416 0.584 39 H 0.073 0.927 40 H 0.055 0.945 41 H 0.120 0.880 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.106 0.894 45 H 0.077 0.923 46 H 0.395 0.605 47 H 0.277 0.723 48 H 0.104 0.896 49 H 0.085 0.915 50 H 0.063 0.937 51 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.739 28.418 -6.567 30.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.277 5.277 3 C -0.092 4.092 4 C -0.155 4.155 5 C -0.110 4.110 6 H 0.087 0.913 7 C -0.164 4.164 8 C 0.294 3.706 9 O -0.464 6.464 10 N -0.373 5.373 11 C 0.011 3.989 12 C -0.120 4.120 13 C -0.120 4.120 14 N -0.207 5.207 15 C -0.109 4.109 16 C 0.229 3.771 17 O -0.504 6.504 18 N -0.214 5.214 19 C -0.464 4.464 20 H 0.096 0.904 21 C -0.214 4.214 22 N -0.562 5.562 23 Si 0.817 3.183 24 H -0.197 1.197 25 H -0.194 1.194 26 H -0.197 1.197 27 C -0.116 4.116 28 C -0.075 4.075 29 H 0.043 0.957 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.106 0.894 33 H 0.066 0.934 34 H 0.112 0.888 35 H 0.106 0.894 36 H 0.143 0.857 37 H 0.131 0.869 38 H 0.252 0.748 39 H 0.091 0.909 40 H 0.073 0.927 41 H 0.138 0.862 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.125 0.875 45 H 0.095 0.905 46 H 0.229 0.771 47 H 0.087 0.913 48 H 0.123 0.877 49 H 0.104 0.896 50 H 0.081 0.919 51 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -8.109 28.037 -6.768 29.961 hybrid contribution -0.802 -1.066 0.374 1.385 sum -8.910 26.971 -6.394 29.116 Atomic orbital electron populations 1.22538 0.87421 1.02012 1.00870 1.63602 1.08523 1.15474 1.40086 1.23159 0.96131 0.88624 1.01285 1.22790 0.97508 0.99455 0.95722 1.22078 0.95329 0.96012 0.97545 0.91332 1.21723 0.99318 0.97942 0.97366 1.21286 0.85260 0.81447 0.82590 1.90691 1.19939 1.69325 1.66461 1.45992 1.11427 1.40283 1.39584 1.21255 0.95709 0.91332 0.90597 1.23061 0.98290 0.95237 0.95397 1.24078 1.00546 0.94592 0.92776 1.68343 1.43508 0.99521 1.09314 1.22354 0.94575 0.90755 1.03183 1.20825 0.90031 0.83168 0.83118 1.90476 1.27012 1.78470 1.54449 1.41963 1.14983 1.05222 1.59257 1.19629 0.95548 0.88190 1.43077 0.90392 1.26057 0.99574 0.98713 0.97011 1.69671 1.22179 1.16226 1.48133 0.84979 0.77671 0.76864 0.78761 1.19691 1.19437 1.19680 1.24070 0.96635 0.91865 0.99051 1.22777 0.98039 0.97102 0.89581 0.95726 0.90238 0.91958 0.89355 0.93428 0.88773 0.89393 0.85661 0.86850 0.74754 0.90860 0.92687 0.86219 0.91347 0.90683 0.87550 0.90538 0.77101 0.91312 0.87740 0.89646 0.91874 0.94176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.12 127.69 1.16 1.48 16 2 N -0.55 -9.54 5.44 -911.68 -4.96 -14.50 16 3 C 0.04 0.43 6.73 86.77 0.58 1.02 16 4 C -0.12 -1.07 6.52 31.98 0.21 -0.87 16 5 C -0.09 -1.22 2.55 -9.61 -0.02 -1.25 16 6 H 0.07 1.14 8.04 -2.38 -0.02 1.12 16 7 C -0.12 -1.27 5.09 29.85 0.15 -1.11 16 8 C 0.51 8.84 7.62 87.65 0.67 9.51 16 9 O -0.58 -15.34 14.84 -3.01 -0.04 -15.39 16 10 N -0.72 -10.29 5.56 -463.07 -2.57 -12.86 16 11 C 0.14 2.30 5.53 86.38 0.48 2.77 16 12 C -0.10 -1.80 3.94 -10.15 -0.04 -1.84 16 13 C 0.01 0.23 7.51 86.41 0.65 0.88 16 14 N -0.48 -15.08 5.65 -912.31 -5.15 -20.23 16 15 C 0.02 0.80 5.28 85.56 0.45 1.25 16 16 C 0.44 21.56 7.83 87.66 0.69 22.25 16 17 O -0.62 -35.22 16.01 -3.08 -0.05 -35.27 16 18 N -0.58 -30.26 5.29 -306.98 -1.62 -31.88 16 19 C -0.33 -19.37 9.68 84.04 0.81 -18.55 16 20 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 21 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 22 N -0.92 -50.35 13.05 21.67 0.28 -50.06 16 23 Si 0.99 43.41 29.55 68.60 2.03 45.44 16 24 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 25 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 26 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 27 C 0.01 0.26 7.51 86.41 0.65 0.91 16 28 C 0.05 0.99 5.48 86.65 0.48 1.47 16 29 H 0.02 0.38 8.10 -2.39 -0.02 0.36 16 30 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 33 H 0.05 0.56 7.78 -2.39 -0.02 0.54 16 34 H 0.09 0.54 8.14 -2.38 -0.02 0.52 16 35 H 0.09 0.69 8.05 -2.39 -0.02 0.67 16 36 H 0.13 0.59 8.14 -2.38 -0.02 0.57 16 37 H 0.11 0.88 8.06 -2.39 -0.02 0.86 16 38 H 0.42 3.78 8.47 -92.71 -0.79 2.99 16 39 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 40 H 0.05 1.12 7.84 -2.38 -0.02 1.10 16 41 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.07 1.79 7.23 -2.38 -0.02 1.77 16 43 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 44 H 0.11 3.28 8.08 -2.38 -0.02 3.26 16 45 H 0.08 2.36 7.38 -2.39 -0.02 2.34 16 46 H 0.40 19.68 7.90 -92.71 -0.73 18.95 16 47 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 48 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 49 H 0.09 1.54 7.88 -2.39 -0.02 1.52 16 50 H 0.06 1.28 7.77 -2.38 -0.02 1.26 16 51 H 0.04 0.94 7.11 -2.39 -0.02 0.92 16 Total: -1.00 -77.22 411.03 -5.30 -82.53 By element: Atomic # 1 Polarization: 35.19 SS G_CDS: -0.59 Total: 34.61 kcal Atomic # 6 Polarization: 10.24 SS G_CDS: 7.38 Total: 17.62 kcal Atomic # 7 Polarization: -115.51 SS G_CDS: -14.03 Total: -129.54 kcal Atomic # 8 Polarization: -50.56 SS G_CDS: -0.09 Total: -50.65 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -77.22 -5.30 -82.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753413853.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.785 kcal (2) G-P(sol) polarization free energy of solvation -77.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds