Wall clock time and date at job start Tue Mar 31 2020 22:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.48530 * 111.00045 * 2 1 4 4 C 1.54944 * 103.22749 * 200.28244 * 3 2 1 5 5 C 1.54598 * 102.92163 * 37.41362 * 4 3 2 6 6 H 1.08997 * 110.39322 * 96.99920 * 5 4 3 7 7 C 1.52995 * 110.30996 * 219.12864 * 5 4 3 8 8 C 1.50704 * 109.46965 * 182.16764 * 7 5 4 9 9 O 1.21274 * 119.99995 * 0.02562 * 8 7 5 10 10 N 1.34775 * 119.99922 * 179.97438 * 8 7 5 11 11 C 1.46498 * 120.00076 * 180.02562 * 10 8 7 12 12 C 1.53003 * 109.47204 * 180.02562 * 11 10 8 13 13 C 1.53514 * 114.17026 * 174.99691 * 12 11 10 14 14 N 1.47481 * 87.92987 * 139.66672 * 13 12 11 15 15 C 1.46895 * 110.99795 * 221.29048 * 14 13 12 16 16 C 1.50700 * 109.47051 * 170.00232 * 15 14 13 17 17 O 1.21292 * 119.99931 * 0.02562 * 16 15 14 18 18 N 1.34784 * 119.99961 * 180.02562 * 16 15 14 19 19 C 1.37090 * 119.99722 * 179.97438 * 18 16 15 20 20 H 1.07999 * 120.00228 * 0.02562 * 19 18 16 21 21 C 1.38955 * 119.99996 * 179.97438 * 19 18 16 22 22 N 1.31411 * 119.99860 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00198 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47088 * 90.00074 * 23 21 19 25 25 H 1.48495 * 109.47293 * 210.00276 * 23 21 19 26 26 H 1.48502 * 109.47297 * 330.00060 * 23 21 19 27 27 C 1.47471 * 87.83830 * 332.99044 * 14 13 12 28 28 C 1.47904 * 110.99410 * 242.60517 * 2 1 3 29 29 H 1.08998 * 109.47664 * 177.39622 * 1 2 3 30 30 H 1.09006 * 109.46884 * 297.39211 * 1 2 3 31 31 H 1.09001 * 109.47481 * 57.39358 * 1 2 3 32 32 H 1.08998 * 110.67018 * 318.71483 * 3 2 1 33 33 H 1.09000 * 110.66832 * 81.68186 * 3 2 1 34 34 H 1.09006 * 110.71994 * 279.05908 * 4 3 2 35 35 H 1.08998 * 110.72704 * 155.77449 * 4 3 2 36 36 H 1.09003 * 109.47406 * 62.17353 * 7 5 4 37 37 H 1.08995 * 109.47391 * 302.17276 * 7 5 4 38 38 H 0.97003 * 120.00338 * 359.97438 * 10 8 7 39 39 H 1.08997 * 109.47527 * 59.99686 * 11 10 8 40 40 H 1.09001 * 109.46549 * 299.99291 * 11 10 8 41 41 H 1.09000 * 113.38398 * 41.91307 * 12 11 10 42 42 H 1.09000 * 113.47684 * 24.90208 * 13 12 11 43 43 H 1.09001 * 113.53045 * 254.44613 * 13 12 11 44 44 H 1.09004 * 109.47210 * 50.00454 * 15 14 13 45 45 H 1.08997 * 109.47605 * 290.00815 * 15 14 13 46 46 H 0.96995 * 120.00015 * 359.72695 * 18 16 15 47 47 H 0.97000 * 120.00310 * 180.02562 * 22 21 19 48 48 H 1.08997 * 113.48003 * 141.77724 * 27 14 13 49 49 H 1.09001 * 113.47587 * 272.24407 * 27 14 13 50 50 H 1.08993 * 109.92147 * 26.49373 * 28 2 1 51 51 H 1.08996 * 110.07995 * 265.28945 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3866 0.0000 4 6 3.4492 1.2106 -0.5229 5 6 3.2982 0.1053 -1.5932 6 1 3.2141 0.5470 -2.5861 7 6 4.4895 -0.8532 -1.5384 8 6 4.3499 -1.8904 -2.6228 9 8 3.3923 -1.8651 -3.3665 10 7 5.2899 -2.8454 -2.7669 11 6 5.1546 -3.8533 -3.8213 12 6 6.3458 -4.8119 -3.7665 13 6 6.2528 -5.9870 -4.7500 14 7 7.6937 -5.8126 -5.0116 15 6 7.9903 -5.9587 -6.4428 16 6 9.4125 -5.5359 -6.7068 17 8 10.1105 -5.1512 -5.7924 18 7 9.9089 -5.5852 -7.9589 19 6 11.2025 -5.2001 -8.1991 20 1 11.8240 -4.8576 -7.3849 21 6 11.7145 -5.2515 -9.4898 22 7 10.9584 -5.6687 -10.4804 23 14 13.4773 -4.7274 -9.8170 24 1 14.3762 -5.9015 -9.6802 25 1 13.5837 -4.1802 -11.1933 26 1 13.8734 -3.6839 -8.8375 27 6 7.5309 -4.3928 -4.6477 28 6 1.9989 -0.6354 -1.2260 29 1 -0.3634 -1.0265 -0.0467 30 1 -0.3633 0.4728 0.9125 31 1 -0.3634 0.5538 -0.8657 32 1 1.4237 2.0205 -0.6729 33 1 2.0014 1.7987 1.0091 34 1 4.1116 0.8835 0.2787 35 1 3.8123 2.1351 -0.9717 36 1 4.5155 -1.3454 -0.5662 37 1 5.4130 -0.2938 -1.6873 38 1 6.0565 -2.8650 -2.1728 39 1 5.1283 -3.3610 -4.7934 40 1 4.2312 -4.4131 -3.6724 41 1 6.6234 -5.0995 -2.7524 42 1 5.6258 -5.7790 -5.6170 43 1 6.0099 -6.9362 -4.2722 44 1 7.3116 -5.3311 -7.0205 45 1 7.8605 -7.0003 -6.7364 46 1 9.3520 -5.8966 -8.6895 47 1 11.3159 -5.7049 -11.3814 48 1 8.3714 -3.9903 -4.0823 49 1 7.2450 -3.7593 -5.4874 50 1 1.2757 -0.5402 -2.0359 51 1 2.2114 -1.6881 -1.0400 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753413854.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:28 Heat of formation + Delta-G solvation = -33.509972 kcal Electronic energy + Delta-G solvation = -28572.318169 eV Core-core repulsion = 24507.507038 eV Total energy + Delta-G solvation = -4064.811130 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.57103 -40.02097 -38.78583 -37.75048 -34.95383 -33.90691 -33.72606 -31.43857 -30.99647 -30.20991 -28.12940 -26.92649 -25.81648 -25.36749 -24.63189 -22.61300 -21.60138 -21.09508 -20.31483 -19.51173 -19.19852 -17.90540 -17.22722 -16.71169 -16.39519 -16.18399 -15.78435 -15.56169 -15.24629 -14.96408 -14.71430 -14.54901 -14.42174 -13.94022 -13.72535 -13.64445 -13.43386 -13.26121 -13.07873 -12.77527 -12.47954 -12.24096 -12.09680 -11.84107 -11.79003 -11.75275 -11.60537 -11.50373 -11.35463 -11.13908 -11.08293 -10.97453 -10.71064 -10.47326 -10.40614 -10.22885 -9.96424 -9.51577 -9.24845 -8.81167 -8.74698 -8.27020 -7.97716 -6.42864 -3.83774 2.46489 2.95389 3.16858 3.25511 3.31153 3.68616 3.87974 4.01955 4.16742 4.21676 4.23879 4.32628 4.45368 4.65334 4.69523 4.87236 4.92165 4.96916 5.03450 5.04492 5.10205 5.14950 5.21571 5.24665 5.33023 5.36457 5.39736 5.41923 5.48872 5.54617 5.55294 5.58110 5.62481 5.71145 5.73401 5.78205 5.80157 5.88735 6.02438 6.15748 6.24312 6.30408 6.51030 6.56314 6.63837 7.18745 7.29749 7.53855 8.03351 8.04304 8.60058 9.16626 9.52756 10.04435 10.74883 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.021749 B = 0.001606 C = 0.001548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.085138 B =17427.648054 C =18089.095147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.527 5.527 3 C 0.032 3.968 4 C -0.121 4.121 5 C -0.082 4.082 6 H 0.083 0.917 7 C -0.133 4.133 8 C 0.510 3.490 9 O -0.542 6.542 10 N -0.728 5.728 11 C 0.131 3.869 12 C -0.134 4.134 13 C 0.004 3.996 14 N -0.444 5.444 15 C 0.009 3.991 16 C 0.444 3.556 17 O -0.580 6.580 18 N -0.564 5.564 19 C -0.300 4.300 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 C 0.019 3.981 28 C 0.050 3.950 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.027 0.973 32 H 0.044 0.956 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.403 0.597 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.108 0.892 42 H 0.070 0.930 43 H 0.087 0.913 44 H 0.055 0.945 45 H 0.091 0.909 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.090 0.910 49 H 0.066 0.934 50 H 0.048 0.952 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.314 9.940 18.584 28.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.251 5.251 3 C -0.095 4.095 4 C -0.159 4.159 5 C -0.102 4.102 6 H 0.102 0.898 7 C -0.173 4.173 8 C 0.297 3.703 9 O -0.419 6.419 10 N -0.380 5.380 11 C 0.007 3.993 12 C -0.153 4.153 13 C -0.125 4.125 14 N -0.166 5.166 15 C -0.123 4.123 16 C 0.229 3.771 17 O -0.463 6.463 18 N -0.201 5.201 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.195 1.195 27 C -0.110 4.110 28 C -0.078 4.078 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.046 0.954 32 H 0.062 0.938 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.237 0.763 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.126 0.874 42 H 0.088 0.912 43 H 0.105 0.895 44 H 0.073 0.927 45 H 0.109 0.891 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.109 0.891 49 H 0.084 0.916 50 H 0.067 0.933 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -18.814 9.462 19.197 28.496 hybrid contribution 0.076 0.768 -1.887 2.039 sum -18.739 10.230 17.310 27.485 Atomic orbital electron populations 1.22506 0.87966 1.02107 1.00740 1.64771 1.08114 1.14807 1.37380 1.23247 0.95102 0.90122 1.01057 1.22589 0.96713 0.98340 0.98238 1.21760 0.93633 0.94954 0.99812 0.89840 1.21780 1.00539 0.96341 0.98619 1.20727 0.82228 0.81994 0.85374 1.90705 1.31322 1.74229 1.45627 1.46047 1.26068 1.30258 1.35632 1.21351 0.97965 0.88885 0.91083 1.23066 0.95371 0.96435 1.00454 1.23841 0.91715 0.98858 0.98131 1.68819 1.15272 1.15398 1.17098 1.22493 0.97182 1.02448 0.90199 1.19667 0.88369 0.85185 0.83881 1.90516 1.60462 1.51754 1.43612 1.41868 1.13336 1.57760 1.07129 1.19698 0.88303 1.40478 0.94445 0.87940 1.25263 1.00135 0.97405 0.95122 1.69611 1.36945 1.47096 1.00641 0.85851 0.81883 0.78937 0.77576 1.20371 1.20929 1.19451 1.23778 0.97357 0.91710 0.98179 1.22854 0.95499 0.99158 0.90297 0.91315 0.91366 0.95401 0.93760 0.90008 0.90317 0.90747 0.88352 0.88552 0.76283 0.91297 0.91195 0.87408 0.91215 0.89458 0.92677 0.89059 0.77496 0.91864 0.89119 0.91553 0.93312 0.90442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.40 60.06 0.56 0.67 16 2 N -0.53 -4.36 5.55 -238.71 -1.33 -5.68 16 3 C 0.03 0.22 6.56 -1.90 -0.01 0.21 16 4 C -0.12 -0.73 6.61 -24.87 -0.16 -0.90 16 5 C -0.08 -0.64 2.62 -89.26 -0.23 -0.87 16 6 H 0.08 0.75 8.00 -51.93 -0.42 0.34 16 7 C -0.13 -0.91 4.90 -27.88 -0.14 -1.04 16 8 C 0.51 5.06 7.34 -10.98 -0.08 4.98 16 9 O -0.54 -7.37 15.07 5.56 0.08 -7.29 16 10 N -0.73 -6.33 5.56 -60.29 -0.33 -6.66 16 11 C 0.13 1.30 5.58 -4.04 -0.02 1.28 16 12 C -0.13 -1.40 4.09 -90.09 -0.37 -1.77 16 13 C 0.00 0.05 7.29 -7.55 -0.05 0.00 16 14 N -0.44 -7.22 6.06 -246.10 -1.49 -8.71 16 15 C 0.01 0.16 5.31 -4.98 -0.03 0.13 16 16 C 0.44 10.55 7.62 -10.98 -0.08 10.47 16 17 O -0.58 -15.75 15.34 5.55 0.09 -15.66 16 18 N -0.56 -14.39 5.29 -10.96 -0.06 -14.45 16 19 C -0.30 -8.39 9.68 -14.93 -0.14 -8.54 16 20 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.58 13.05 55.50 0.72 -23.86 16 23 Si 0.93 21.08 29.55 -169.99 -5.02 16.06 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 26 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 27 C 0.02 0.27 6.28 -7.55 -0.05 0.22 16 28 C 0.05 0.45 5.28 -2.75 -0.01 0.43 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.03 0.19 8.00 -51.93 -0.42 -0.23 16 32 H 0.04 0.29 7.96 -51.93 -0.41 -0.12 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.43 7.86 -51.93 -0.41 0.03 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.40 2.60 8.47 -40.82 -0.35 2.26 16 39 H 0.07 0.78 7.81 -51.93 -0.41 0.38 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.11 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.07 0.75 7.73 -51.93 -0.40 0.35 16 43 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.06 0.88 7.56 -51.93 -0.39 0.49 16 45 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 46 H 0.39 9.56 7.90 -40.82 -0.32 9.23 16 47 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 48 H 0.09 1.46 8.13 -51.93 -0.42 1.04 16 49 H 0.07 0.99 7.43 -51.93 -0.39 0.60 16 50 H 0.05 0.50 7.73 -51.93 -0.40 0.10 16 51 H 0.08 0.78 7.28 -51.93 -0.38 0.40 16 LS Contribution 409.63 15.07 6.17 6.17 Total: -1.00 -33.92 409.63 -10.94 -44.86 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -8.85 Total: 9.46 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: -0.92 Total: 5.77 kcal Atomic # 7 Polarization: -56.88 SS G_CDS: -2.49 Total: -59.37 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: 0.17 Total: -22.95 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.92 -10.94 -44.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753413854.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.352 kcal (2) G-P(sol) polarization free energy of solvation -33.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds