Wall clock time and date at job start Tue Mar 31 2020 22:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.48530 * 111.00045 * 2 1 4 4 C 1.54944 * 103.22749 * 200.28244 * 3 2 1 5 5 C 1.54598 * 102.92163 * 37.41362 * 4 3 2 6 6 H 1.08997 * 110.39322 * 96.99920 * 5 4 3 7 7 C 1.52995 * 110.30996 * 219.12864 * 5 4 3 8 8 C 1.50704 * 109.46965 * 182.16764 * 7 5 4 9 9 O 1.21274 * 119.99995 * 0.02562 * 8 7 5 10 10 N 1.34775 * 119.99922 * 179.97438 * 8 7 5 11 11 C 1.46498 * 120.00076 * 180.02562 * 10 8 7 12 12 C 1.53003 * 109.47204 * 180.02562 * 11 10 8 13 13 C 1.53514 * 114.17026 * 174.99691 * 12 11 10 14 14 N 1.47481 * 87.92987 * 139.66672 * 13 12 11 15 15 C 1.46895 * 110.99795 * 221.29048 * 14 13 12 16 16 C 1.50700 * 109.47051 * 170.00232 * 15 14 13 17 17 O 1.21292 * 119.99931 * 0.02562 * 16 15 14 18 18 N 1.34784 * 119.99961 * 180.02562 * 16 15 14 19 19 C 1.37090 * 119.99722 * 179.97438 * 18 16 15 20 20 H 1.07999 * 120.00228 * 0.02562 * 19 18 16 21 21 C 1.38955 * 119.99996 * 179.97438 * 19 18 16 22 22 N 1.31411 * 119.99860 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00198 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47088 * 90.00074 * 23 21 19 25 25 H 1.48495 * 109.47293 * 210.00276 * 23 21 19 26 26 H 1.48502 * 109.47297 * 330.00060 * 23 21 19 27 27 C 1.47471 * 87.83830 * 332.99044 * 14 13 12 28 28 C 1.47904 * 110.99410 * 242.60517 * 2 1 3 29 29 H 1.08998 * 109.47664 * 177.39622 * 1 2 3 30 30 H 1.09006 * 109.46884 * 297.39211 * 1 2 3 31 31 H 1.09001 * 109.47481 * 57.39358 * 1 2 3 32 32 H 1.08998 * 110.67018 * 318.71483 * 3 2 1 33 33 H 1.09000 * 110.66832 * 81.68186 * 3 2 1 34 34 H 1.09006 * 110.71994 * 279.05908 * 4 3 2 35 35 H 1.08998 * 110.72704 * 155.77449 * 4 3 2 36 36 H 1.09003 * 109.47406 * 62.17353 * 7 5 4 37 37 H 1.08995 * 109.47391 * 302.17276 * 7 5 4 38 38 H 0.97003 * 120.00338 * 359.97438 * 10 8 7 39 39 H 1.08997 * 109.47527 * 59.99686 * 11 10 8 40 40 H 1.09001 * 109.46549 * 299.99291 * 11 10 8 41 41 H 1.09000 * 113.38398 * 41.91307 * 12 11 10 42 42 H 1.09000 * 113.47684 * 24.90208 * 13 12 11 43 43 H 1.09001 * 113.53045 * 254.44613 * 13 12 11 44 44 H 1.09004 * 109.47210 * 50.00454 * 15 14 13 45 45 H 1.08997 * 109.47605 * 290.00815 * 15 14 13 46 46 H 0.96995 * 120.00015 * 359.72695 * 18 16 15 47 47 H 0.97000 * 120.00310 * 180.02562 * 22 21 19 48 48 H 1.08997 * 113.48003 * 141.77724 * 27 14 13 49 49 H 1.09001 * 113.47587 * 272.24407 * 27 14 13 50 50 H 1.08993 * 109.92147 * 26.49373 * 28 2 1 51 51 H 1.08996 * 110.07995 * 265.28945 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3866 0.0000 4 6 3.4492 1.2106 -0.5229 5 6 3.2982 0.1053 -1.5932 6 1 3.2141 0.5470 -2.5861 7 6 4.4895 -0.8532 -1.5384 8 6 4.3499 -1.8904 -2.6228 9 8 3.3923 -1.8651 -3.3665 10 7 5.2899 -2.8454 -2.7669 11 6 5.1546 -3.8533 -3.8213 12 6 6.3458 -4.8119 -3.7665 13 6 6.2528 -5.9870 -4.7500 14 7 7.6937 -5.8126 -5.0116 15 6 7.9903 -5.9587 -6.4428 16 6 9.4125 -5.5359 -6.7068 17 8 10.1105 -5.1512 -5.7924 18 7 9.9089 -5.5852 -7.9589 19 6 11.2025 -5.2001 -8.1991 20 1 11.8240 -4.8576 -7.3849 21 6 11.7145 -5.2515 -9.4898 22 7 10.9584 -5.6687 -10.4804 23 14 13.4773 -4.7274 -9.8170 24 1 14.3762 -5.9015 -9.6802 25 1 13.5837 -4.1802 -11.1933 26 1 13.8734 -3.6839 -8.8375 27 6 7.5309 -4.3928 -4.6477 28 6 1.9989 -0.6354 -1.2260 29 1 -0.3634 -1.0265 -0.0467 30 1 -0.3633 0.4728 0.9125 31 1 -0.3634 0.5538 -0.8657 32 1 1.4237 2.0205 -0.6729 33 1 2.0014 1.7987 1.0091 34 1 4.1116 0.8835 0.2787 35 1 3.8123 2.1351 -0.9717 36 1 4.5155 -1.3454 -0.5662 37 1 5.4130 -0.2938 -1.6873 38 1 6.0565 -2.8650 -2.1728 39 1 5.1283 -3.3610 -4.7934 40 1 4.2312 -4.4131 -3.6724 41 1 6.6234 -5.0995 -2.7524 42 1 5.6258 -5.7790 -5.6170 43 1 6.0099 -6.9362 -4.2722 44 1 7.3116 -5.3311 -7.0205 45 1 7.8605 -7.0003 -6.7364 46 1 9.3520 -5.8966 -8.6895 47 1 11.3159 -5.7049 -11.3814 48 1 8.3714 -3.9903 -4.0823 49 1 7.2450 -3.7593 -5.4874 50 1 1.2757 -0.5402 -2.0359 51 1 2.2114 -1.6881 -1.0400 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753413854.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:27 Heat of formation + Delta-G solvation = -62.006363 kcal Electronic energy + Delta-G solvation = -28573.553865 eV Core-core repulsion = 24507.507038 eV Total energy + Delta-G solvation = -4066.046827 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.60001 -40.90631 -39.69962 -39.35030 -36.04864 -35.73038 -34.34198 -33.34150 -32.24241 -30.87924 -29.08870 -27.88793 -26.90394 -26.67900 -25.70297 -23.83676 -22.18765 -21.81541 -21.11807 -20.98138 -20.37588 -19.90574 -18.03942 -17.82620 -17.44978 -17.15661 -16.65570 -16.64475 -16.42339 -16.25631 -16.10818 -15.72807 -15.41981 -15.17286 -14.98222 -14.68562 -14.39332 -14.04158 -13.99257 -13.72177 -13.59751 -13.53372 -13.36052 -13.07769 -12.87175 -12.75022 -12.45324 -12.42123 -12.37571 -12.30432 -12.14147 -12.12805 -11.84995 -11.72751 -11.55964 -11.52787 -11.46626 -10.79665 -10.35820 -10.06340 -10.03801 -9.77785 -9.44102 -8.48536 -5.97605 1.36678 1.40437 1.53220 1.70515 2.02322 2.22193 2.28068 2.85866 3.10562 3.17694 3.25241 3.43820 3.60248 3.67124 3.74098 3.86690 4.03229 4.16952 4.20083 4.28836 4.34648 4.38209 4.42155 4.46307 4.47872 4.50368 4.52614 4.58952 4.63050 4.67934 4.72316 4.82780 4.84166 4.88269 4.89992 4.94811 5.00004 5.08482 5.19047 5.22359 5.32241 5.35322 5.39457 5.50851 5.89146 5.90995 6.04695 6.06979 6.57729 6.60248 7.10379 7.30688 7.53287 8.08871 8.68876 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.021749 B = 0.001606 C = 0.001548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.085138 B =17427.648054 C =18089.095147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.536 5.536 3 C 0.029 3.971 4 C -0.113 4.113 5 C -0.083 4.083 6 H 0.065 0.935 7 C -0.124 4.124 8 C 0.506 3.494 9 O -0.584 6.584 10 N -0.721 5.721 11 C 0.138 3.862 12 C -0.103 4.103 13 C 0.009 3.991 14 N -0.474 5.474 15 C 0.021 3.979 16 C 0.440 3.560 17 O -0.618 6.618 18 N -0.574 5.574 19 C -0.335 4.335 20 H 0.079 0.921 21 C -0.013 4.013 22 N -0.920 5.920 23 Si 0.994 3.006 24 H -0.271 1.271 25 H -0.270 1.270 26 H -0.273 1.273 27 C 0.012 3.988 28 C 0.054 3.946 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.025 0.975 32 H 0.042 0.958 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.416 0.584 39 H 0.054 0.946 40 H 0.075 0.925 41 H 0.123 0.877 42 H 0.083 0.917 43 H 0.106 0.894 44 H 0.075 0.925 45 H 0.109 0.891 46 H 0.396 0.604 47 H 0.278 0.722 48 H 0.067 0.933 49 H 0.059 0.941 50 H 0.027 0.973 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.553 10.184 19.676 29.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.260 5.260 3 C -0.098 4.098 4 C -0.151 4.151 5 C -0.102 4.102 6 H 0.084 0.916 7 C -0.164 4.164 8 C 0.294 3.706 9 O -0.464 6.464 10 N -0.373 5.373 11 C 0.013 3.987 12 C -0.122 4.122 13 C -0.120 4.120 14 N -0.196 5.196 15 C -0.110 4.110 16 C 0.227 3.773 17 O -0.504 6.504 18 N -0.211 5.211 19 C -0.465 4.465 20 H 0.097 0.903 21 C -0.212 4.212 22 N -0.561 5.561 23 Si 0.817 3.183 24 H -0.196 1.196 25 H -0.195 1.195 26 H -0.198 1.198 27 C -0.118 4.118 28 C -0.074 4.074 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.043 0.957 32 H 0.060 0.940 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.104 0.896 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.252 0.748 39 H 0.072 0.928 40 H 0.093 0.907 41 H 0.141 0.859 42 H 0.101 0.899 43 H 0.124 0.876 44 H 0.093 0.907 45 H 0.127 0.873 46 H 0.229 0.771 47 H 0.087 0.913 48 H 0.085 0.915 49 H 0.077 0.923 50 H 0.045 0.955 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -19.059 9.692 20.300 29.484 hybrid contribution 0.102 0.683 -2.192 2.299 sum -18.958 10.375 18.108 28.194 Atomic orbital electron populations 1.22539 0.87483 1.02112 1.01287 1.64786 1.08754 1.15828 1.36651 1.23340 0.95426 0.89248 1.01802 1.22589 0.96534 0.98135 0.97870 1.21735 0.93404 0.95588 0.99511 0.91605 1.21793 1.00943 0.95483 0.98188 1.21290 0.81526 0.82304 0.85443 1.90692 1.33048 1.75293 1.47369 1.45999 1.26305 1.29678 1.35336 1.21194 0.97730 0.88911 0.90835 1.22876 0.93422 0.95471 1.00416 1.23934 0.88942 1.00205 0.98885 1.68815 1.18730 1.16374 1.15684 1.22380 0.93043 1.03590 0.92020 1.20738 0.90487 0.83368 0.82690 1.90481 1.62288 1.53053 1.44596 1.41948 1.12857 1.58331 1.08010 1.19667 0.89621 1.42605 0.94566 0.90334 1.26051 1.03983 0.96792 0.94408 1.69672 1.38434 1.46993 1.01014 0.84915 0.77040 0.78580 0.77720 1.19593 1.19502 1.19763 1.23780 0.98289 0.90973 0.98709 1.22747 0.95838 0.98826 0.90027 0.91580 0.90032 0.95662 0.93970 0.88760 0.89126 0.89557 0.86485 0.86389 0.74779 0.92811 0.90675 0.85857 0.89909 0.87599 0.90665 0.87280 0.77059 0.91278 0.91454 0.92290 0.95455 0.91659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.40 127.69 1.20 1.40 16 2 N -0.54 -8.45 5.55 -909.14 -5.05 -13.49 16 3 C 0.03 0.35 6.56 86.65 0.57 0.92 16 4 C -0.11 -1.15 6.61 31.80 0.21 -0.94 16 5 C -0.08 -1.22 2.62 -9.91 -0.03 -1.24 16 6 H 0.07 1.20 8.00 -2.39 -0.02 1.18 16 7 C -0.12 -1.48 4.90 29.85 0.15 -1.33 16 8 C 0.51 9.56 7.34 87.66 0.64 10.20 16 9 O -0.58 -16.00 15.07 -3.01 -0.05 -16.05 16 10 N -0.72 -11.41 5.56 -463.06 -2.57 -13.99 16 11 C 0.14 2.52 5.58 86.38 0.48 3.00 16 12 C -0.10 -1.95 4.09 -10.45 -0.04 -2.00 16 13 C 0.01 0.19 7.29 83.57 0.61 0.80 16 14 N -0.47 -14.88 6.06 -932.53 -5.65 -20.53 16 15 C 0.02 0.74 5.31 85.56 0.45 1.20 16 16 C 0.44 21.24 7.62 87.66 0.67 21.91 16 17 O -0.62 -34.54 15.34 -3.07 -0.05 -34.59 16 18 N -0.57 -29.86 5.29 -306.98 -1.62 -31.49 16 19 C -0.34 -19.22 9.68 84.04 0.81 -18.40 16 20 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 21 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 22 N -0.92 -49.94 13.05 21.66 0.28 -49.66 16 23 Si 0.99 43.10 29.55 68.60 2.03 45.12 16 24 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 25 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 26 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 27 C 0.01 0.33 6.28 83.57 0.53 0.86 16 28 C 0.05 0.97 5.28 86.45 0.46 1.43 16 29 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.02 0.35 8.00 -2.39 -0.02 0.33 16 32 H 0.04 0.52 7.96 -2.39 -0.02 0.50 16 33 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.09 0.73 7.86 -2.38 -0.02 0.71 16 35 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.42 4.47 8.47 -92.71 -0.79 3.69 16 39 H 0.05 1.18 7.81 -2.39 -0.02 1.16 16 40 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.08 1.55 7.73 -2.39 -0.02 1.53 16 43 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.08 2.31 7.56 -2.38 -0.02 2.29 16 45 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 46 H 0.40 19.55 7.90 -92.71 -0.73 18.82 16 47 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 48 H 0.07 2.22 8.13 -2.39 -0.02 2.20 16 49 H 0.06 1.76 7.43 -2.39 -0.02 1.74 16 50 H 0.03 0.59 7.73 -2.39 -0.02 0.57 16 51 H 0.06 1.32 7.28 -2.39 -0.02 1.30 16 Total: -1.00 -75.30 409.63 -6.09 -81.39 By element: Atomic # 1 Polarization: 36.26 SS G_CDS: -0.59 Total: 35.68 kcal Atomic # 6 Polarization: 10.42 SS G_CDS: 7.18 Total: 17.60 kcal Atomic # 7 Polarization: -114.54 SS G_CDS: -14.61 Total: -129.15 kcal Atomic # 8 Polarization: -50.54 SS G_CDS: -0.09 Total: -50.63 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Total: -75.30 -6.09 -81.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753413854.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.386 kcal (2) G-P(sol) polarization free energy of solvation -75.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds