Wall clock time and date at job start Tue Mar 31 2020 22:02:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 O 1.42900 * 109.46791 * 2 1
4 4 C 1.42895 * 113.99764 * 180.02562 * 3 2 1
5 5 C 1.53004 * 109.46923 * 180.02562 * 4 3 2
6 6 N 1.46507 * 109.46919 * 180.02562 * 5 4 3
7 7 C 1.36735 * 127.13824 * 84.72731 * 6 5 4
8 8 C 1.50700 * 126.34684 * 0.02562 * 7 6 5
9 9 H 1.08998 * 110.45941 * 357.40710 * 8 7 6
10 10 C 1.54515 * 110.50673 * 120.00449 * 8 7 6
11 11 C 1.54483 * 104.06011 * 118.64739 * 10 8 7
12 12 O 1.44425 * 104.80422 * 23.97994 * 11 10 8
13 13 C 1.44432 * 105.27631 * 319.48687 * 12 11 10
14 14 N 1.30294 * 107.30656 * 179.97438 * 7 6 5
15 15 N 1.28531 * 110.05349 * 359.97438 * 14 7 6
16 16 C 1.31218 * 109.85795 * 359.97438 * 15 14 7
17 17 N 1.38579 * 126.47278 * 180.02562 * 16 15 14
18 18 C 1.46904 * 111.00016 * 69.76167 * 17 16 15
19 19 C 1.46897 * 111.00143 * 305.81227 * 17 16 15
20 20 H 1.09004 * 109.47306 * 59.99925 * 19 17 16
21 21 C 1.53004 * 109.47045 * 299.99716 * 19 17 16
22 22 C 1.50701 * 109.47586 * 179.97438 * 19 17 16
23 23 H 1.08005 * 119.99712 * 5.52541 * 22 19 17
24 24 C 1.37869 * 120.00307 * 185.52339 * 22 19 17
25 25 N 1.31515 * 120.00246 * 8.92112 * 24 22 19
26 26 Si 1.86798 * 120.00185 * 188.91407 * 24 22 19
27 27 H 1.48499 * 109.47370 * 94.99271 * 26 24 22
28 28 H 1.48500 * 109.47284 * 214.99727 * 26 24 22
29 29 H 1.48500 * 109.46989 * 334.99501 * 26 24 22
30 30 H 1.09004 * 109.47001 * 179.97438 * 1 2 3
31 31 H 1.08997 * 109.47247 * 299.99325 * 1 2 3
32 32 H 1.09000 * 109.47118 * 60.00181 * 1 2 3
33 33 H 1.08999 * 109.46742 * 240.00579 * 2 1 3
34 34 H 1.08990 * 109.47062 * 120.00354 * 2 1 3
35 35 H 1.09002 * 109.47321 * 60.00316 * 4 3 2
36 36 H 1.08997 * 109.47459 * 300.00450 * 4 3 2
37 37 H 1.08996 * 109.47735 * 60.00199 * 5 4 3
38 38 H 1.09003 * 109.47069 * 299.99849 * 5 4 3
39 39 H 1.08998 * 110.50748 * 237.28615 * 10 8 7
40 40 H 1.08997 * 110.51195 * 359.86888 * 10 8 7
41 41 H 1.08995 * 110.37139 * 142.80758 * 11 10 8
42 42 H 1.09001 * 110.37433 * 265.14598 * 11 10 8
43 43 H 1.09008 * 110.37104 * 281.68570 * 13 12 11
44 44 H 1.08997 * 110.37072 * 159.34419 * 13 12 11
45 45 H 1.09009 * 109.46839 * 63.58490 * 18 17 16
46 46 H 1.09000 * 109.47195 * 183.58341 * 18 17 16
47 47 H 1.08998 * 109.47402 * 303.58554 * 18 17 16
48 48 H 1.08997 * 109.46658 * 64.05740 * 21 19 17
49 49 H 1.09001 * 109.47019 * 184.05419 * 21 19 17
50 50 H 1.09000 * 109.46770 * 304.06021 * 21 19 17
51 51 H 0.96998 * 120.00286 * 179.97438 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 8 2.0063 1.3473 0.0000
4 6 3.4308 1.4602 -0.0006
5 6 3.8252 2.9385 0.0001
6 7 5.2857 3.0542 -0.0011
7 6 6.1156 3.0203 -1.0873
8 6 5.6977 2.8557 -2.5258
9 1 4.6188 2.7176 -2.5957
10 6 6.1424 4.0767 -3.3618
11 6 7.1025 3.4807 -4.4151
12 8 6.7146 2.0939 -4.5253
13 6 6.4417 1.6665 -3.1730
14 7 7.3346 3.1578 -0.6482
15 7 7.3313 3.2759 0.6317
16 6 6.0998 3.2202 1.0813
17 7 5.7013 3.3116 2.4054
18 6 5.9016 4.6719 2.9227
19 6 6.4034 2.3240 3.2359
20 1 7.4775 2.5011 3.1812
21 6 6.0920 0.9154 2.7261
22 6 5.9457 2.4538 4.6659
23 1 5.1442 3.1328 4.9168
24 6 6.5500 1.7057 5.6537
25 7 7.6353 1.0137 5.3836
26 14 5.8276 1.6751 7.3761
27 1 4.9382 0.4946 7.5190
28 1 6.9258 1.5910 8.3721
29 1 5.0445 2.9156 7.6065
30 1 -0.3633 -1.0277 -0.0005
31 1 -0.3633 0.5137 0.8900
32 1 -0.3633 0.5138 -0.8900
33 1 1.8933 -0.5137 -0.8900
34 1 1.8933 -0.5138 0.8899
35 1 3.8332 0.9768 -0.8908
36 1 3.8340 0.9765 0.8891
37 1 3.4229 3.4215 0.8905
38 1 3.4220 3.4225 -0.8894
39 1 5.2836 4.5405 -3.8469
40 1 6.6625 4.8003 -2.7341
41 1 6.9771 3.9869 -5.3722
42 1 8.1352 3.5601 -4.0754
43 1 7.3731 1.4677 -2.6426
44 1 5.8088 0.7791 -3.1759
45 1 5.2665 5.3668 2.3731
46 1 5.6409 4.7004 3.9807
47 1 6.9460 4.9579 2.7981
48 1 6.4875 0.7986 1.7172
49 1 6.5540 0.1802 3.3850
50 1 5.0126 0.7642 2.7130
51 1 8.0607 0.4877 6.0787
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001768152823.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:02:56
Heat of formation + Delta-G solvation = -20.606642 kcal
Electronic energy + Delta-G solvation = -31357.637216 eV
Core-core repulsion = 27293.385615 eV
Total energy + Delta-G solvation = -4064.251600 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-44.12710 -40.30038 -39.23372 -38.78858 -36.36544 -34.97574 -33.95395 -32.53191
-31.53731 -30.77657 -29.97081 -29.48102 -27.48014 -26.16349 -24.87961 -24.51847
-23.72672 -23.58739 -23.02352 -21.35640 -20.80815 -18.62650 -18.28328 -17.89188
-17.57212 -17.27859 -17.17996 -16.85256 -16.69791 -16.42553 -16.01783 -15.68678
-15.39180 -15.27519 -15.06115 -14.77104 -14.21799 -14.02020 -13.82405 -13.39411
-13.31957 -13.22022 -13.18644 -13.09594 -12.87050 -12.71266 -12.66239 -12.57245
-12.39363 -12.34427 -12.22196 -12.16191 -12.11804 -12.08942 -11.90069 -11.51037
-11.19237 -11.11041 -10.82494 -10.69217 -10.61134 -10.01097 -9.55861 -8.18755
-6.29525 0.61300 1.12586 1.43816 1.45044 1.55717 1.73215 2.38642
2.55532 2.79600 3.06645 3.14200 3.36016 3.47784 3.58519 3.68087
3.81137 3.95366 4.07557 4.11294 4.14533 4.16333 4.29736 4.31481
4.34114 4.37936 4.47940 4.53453 4.58297 4.62242 4.68604 4.69861
4.77409 4.81734 4.85319 4.87520 4.88618 4.99130 5.01916 5.03553
5.05456 5.06638 5.27808 5.33789 5.45872 5.59897 5.71634 5.78256
5.91320 6.05560 6.08663 6.57662 6.81641 7.38770 7.68777 8.90852
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.009631 B = 0.003928 C = 0.003081
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2906.663408 B = 7125.825636 C = 9085.592346
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C 0.049 3.951
3 O -0.392 6.392
4 C 0.058 3.942
5 C 0.115 3.885
6 N -0.460 5.460
7 C 0.189 3.811
8 C -0.028 4.028
9 H 0.130 0.870
10 C -0.136 4.136
11 C 0.044 3.956
12 O -0.382 6.382
13 C 0.060 3.940
14 N -0.316 5.316
15 N -0.357 5.357
16 C 0.370 3.630
17 N -0.466 5.466
18 C 0.050 3.950
19 C 0.235 3.765
20 H -0.021 1.021
21 C -0.103 4.103
22 C -0.523 4.523
23 H 0.074 0.926
24 C 0.017 3.983
25 N -0.921 5.921
26 Si 0.964 3.036
27 H -0.275 1.275
28 H -0.288 1.288
29 H -0.260 1.260
30 H 0.089 0.911
31 H 0.056 0.944
32 H 0.069 0.931
33 H 0.063 0.937
34 H 0.042 0.958
35 H 0.066 0.934
36 H 0.036 0.964
37 H 0.106 0.894
38 H 0.133 0.867
39 H 0.113 0.887
40 H 0.070 0.930
41 H 0.120 0.880
42 H 0.053 0.947
43 H 0.049 0.951
44 H 0.113 0.887
45 H 0.077 0.923
46 H 0.091 0.909
47 H 0.014 0.986
48 H 0.003 0.997
49 H 0.049 0.951
50 H 0.045 0.955
51 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.587 2.503 -17.833 22.559
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.027 4.027
3 O -0.311 6.311
4 C -0.020 4.020
5 C -0.007 4.007
6 N -0.154 5.154
7 C -0.080 4.080
8 C -0.050 4.050
9 H 0.147 0.853
10 C -0.174 4.174
11 C -0.032 4.032
12 O -0.301 6.301
13 C -0.018 4.018
14 N -0.155 5.155
15 N -0.199 5.199
16 C 0.013 3.987
17 N -0.192 5.192
18 C -0.097 4.097
19 C 0.129 3.871
20 H -0.003 1.003
21 C -0.161 4.161
22 C -0.561 4.561
23 H 0.092 0.908
24 C -0.183 4.183
25 N -0.560 5.560
26 Si 0.789 3.211
27 H -0.201 1.201
28 H -0.214 1.214
29 H -0.184 1.184
30 H 0.108 0.892
31 H 0.075 0.925
32 H 0.088 0.912
33 H 0.082 0.918
34 H 0.061 0.939
35 H 0.084 0.916
36 H 0.055 0.945
37 H 0.124 0.876
38 H 0.151 0.849
39 H 0.131 0.869
40 H 0.088 0.912
41 H 0.138 0.862
42 H 0.072 0.928
43 H 0.068 0.932
44 H 0.131 0.869
45 H 0.095 0.905
46 H 0.109 0.891
47 H 0.033 0.967
48 H 0.022 0.978
49 H 0.068 0.932
50 H 0.064 0.936
51 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -12.614 2.435 -17.895 22.029
hybrid contribution 0.113 -0.416 1.695 1.749
sum -12.501 2.018 -16.200 20.562
Atomic orbital electron populations
1.21750 0.91994 1.03527 1.03064 1.22714 0.96855 0.82362 1.00748
1.87764 1.19271 1.28450 1.95596 1.22557 0.82487 0.95885 1.01021
1.21706 0.74160 0.97404 1.07411 1.46316 1.09182 1.54194 1.05741
1.24979 0.86607 1.04375 0.91990 1.21158 1.02954 0.98124 0.82719
0.85256 1.22992 1.01343 0.96240 0.96835 1.23571 0.97665 0.81345
1.00654 1.89113 1.88433 1.27031 1.25532 1.23418 0.99188 0.96648
0.82582 1.73857 1.19184 1.19328 1.03151 1.74667 1.18899 1.22374
1.03978 1.22730 0.85430 1.00891 0.89694 1.59183 1.57198 1.07854
0.95003 1.22275 0.98998 0.86165 1.02276 1.19062 0.90422 0.86857
0.90753 1.00295 1.21483 0.99158 0.99292 0.96191 1.21278 1.18943
1.25000 0.90909 0.90834 1.25744 0.94466 0.95134 1.02937 1.70131
1.19187 1.31354 1.35293 0.85452 0.77941 0.78977 0.78751 1.20110
1.21393 1.18428 0.89206 0.92459 0.91241 0.91841 0.93936 0.91568
0.94533 0.87588 0.84942 0.86898 0.91160 0.86198 0.92819 0.93236
0.86861 0.90450 0.89090 0.96717 0.97790 0.93224 0.93647 0.92773
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.09 10.28 71.98 0.74 -1.35 16
2 C 0.05 0.91 6.66 71.98 0.48 1.39 16
3 O -0.39 -8.88 10.34 -148.98 -1.54 -10.42 16
4 C 0.06 1.40 6.26 71.98 0.45 1.85 16
5 C 0.12 2.72 6.16 86.38 0.53 3.26 16
6 N -0.46 -14.38 2.81 -514.84 -1.45 -15.83 16
7 C 0.19 5.66 6.41 137.64 0.88 6.54 16
8 C -0.03 -0.57 3.52 -10.52 -0.04 -0.61 16
9 H 0.13 1.81 7.19 -2.39 -0.02 1.80 16
10 C -0.14 -2.29 6.73 31.61 0.21 -2.08 16
11 C 0.04 0.77 7.63 72.49 0.55 1.32 16
12 O -0.38 -8.31 11.65 -148.98 -1.74 -10.04 16
13 C 0.06 1.28 7.17 72.49 0.52 1.80 16
14 N -0.32 -12.37 11.90 -49.54 -0.59 -12.96 16
15 N -0.36 -16.26 12.00 -58.01 -0.70 -16.95 16
16 C 0.37 15.07 5.17 260.11 1.34 16.42 16
17 N -0.47 -20.10 4.63 -710.97 -3.29 -23.39 16
18 C 0.05 1.97 9.32 127.69 1.19 3.16 16
19 C 0.23 12.14 1.83 44.17 0.08 12.22 16
20 H -0.02 -1.27 7.96 -2.38 -0.02 -1.29 16
21 C -0.10 -5.13 8.86 71.98 0.64 -4.49 16
22 C -0.52 -27.77 7.61 25.60 0.19 -27.57 16
23 H 0.07 3.74 6.69 -2.91 -0.02 3.72 16
24 C 0.02 0.92 5.18 84.65 0.44 1.36 16
25 N -0.92 -53.59 12.14 21.44 0.26 -53.33 16
26 Si 0.96 42.37 29.55 68.60 2.03 44.40 16
27 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16
28 H -0.29 -12.65 7.11 99.48 0.71 -11.95 16
29 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16
30 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16
31 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16
32 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16
33 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16
34 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16
35 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16
36 H 0.04 1.11 7.32 -2.39 -0.02 1.10 16
37 H 0.11 2.73 8.11 -2.39 -0.02 2.71 16
38 H 0.13 2.13 7.54 -2.39 -0.02 2.11 16
39 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16
40 H 0.07 1.46 7.73 -2.39 -0.02 1.44 16
41 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16
42 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16
43 H 0.05 1.34 7.64 -2.38 -0.02 1.33 16
44 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16
45 H 0.08 2.50 8.14 -2.38 -0.02 2.48 16
46 H 0.09 3.63 6.10 -2.39 -0.01 3.62 16
47 H 0.01 0.61 8.13 -2.39 -0.02 0.59 16
48 H 0.00 0.15 7.37 -2.39 -0.02 0.14 16
49 H 0.05 2.70 6.80 -2.39 -0.02 2.69 16
50 H 0.04 2.09 7.32 -2.39 -0.02 2.07 16
51 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16
Total: -1.00 -70.88 408.90 2.11 -68.76
By element:
Atomic # 1 Polarization: 15.63 SS G_CDS: 0.90 Total: 16.53 kcal
Atomic # 6 Polarization: 5.01 SS G_CDS: 8.22 Total: 13.23 kcal
Atomic # 7 Polarization: -116.70 SS G_CDS: -5.76 Total: -122.46 kcal
Atomic # 8 Polarization: -17.19 SS G_CDS: -3.28 Total: -20.46 kcal
Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal
Total: -70.88 2.11 -68.76 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001768152823.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 48.156 kcal
(2) G-P(sol) polarization free energy of solvation -70.875 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.720 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.113 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.763 kcal
(6) G-S(sol) free energy of system = (1) + (5) -20.607 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds