Wall clock time and date at job start Tue Mar 31 2020 22:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42898 * 109.47401 * 2 1 4 4 C 1.42902 * 114.00160 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47043 * 180.02562 * 4 3 2 6 6 N 1.46499 * 109.46987 * 180.02562 * 5 4 3 7 7 C 1.36739 * 127.13966 * 85.99529 * 6 5 4 8 8 C 1.50695 * 126.34632 * 359.94463 * 7 6 5 9 9 H 1.09002 * 110.45877 * 357.39080 * 8 7 6 10 10 C 1.54503 * 110.51481 * 120.00060 * 8 7 6 11 11 C 1.54474 * 104.06676 * 118.64048 * 10 8 7 12 12 O 1.44430 * 104.79961 * 23.98312 * 11 10 8 13 13 C 1.44423 * 105.27423 * 319.48515 * 12 11 10 14 14 N 1.30292 * 107.30175 * 179.97438 * 7 6 5 15 15 N 1.28520 * 110.05963 * 0.02562 * 14 7 6 16 16 C 1.31219 * 109.85791 * 359.73759 * 15 14 7 17 17 N 1.38588 * 126.47369 * 180.26308 * 16 15 14 18 18 C 1.46894 * 111.00013 * 57.29563 * 17 16 15 19 19 C 1.46903 * 110.99433 * 293.34284 * 17 16 15 20 20 H 1.08994 * 109.47246 * 309.99536 * 19 17 16 21 21 C 1.52997 * 109.47186 * 70.00318 * 19 17 16 22 22 C 1.50707 * 109.46571 * 189.99873 * 19 17 16 23 23 H 1.07999 * 119.99898 * 359.97438 * 22 19 17 24 24 C 1.37871 * 119.99896 * 180.02562 * 22 19 17 25 25 N 1.31518 * 119.99912 * 0.02562 * 24 22 19 26 26 Si 1.86797 * 120.00226 * 180.02562 * 24 22 19 27 27 H 1.48498 * 109.47422 * 89.99818 * 26 24 22 28 28 H 1.48499 * 109.47457 * 210.00110 * 26 24 22 29 29 H 1.48511 * 109.47178 * 330.00001 * 26 24 22 30 30 H 1.08992 * 109.47096 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46937 * 300.00073 * 1 2 3 32 32 H 1.08993 * 109.46952 * 59.99741 * 1 2 3 33 33 H 1.08997 * 109.47431 * 120.00347 * 2 1 3 34 34 H 1.09008 * 109.46782 * 240.00244 * 2 1 3 35 35 H 1.09005 * 109.46747 * 299.99772 * 4 3 2 36 36 H 1.08997 * 109.47112 * 59.99739 * 4 3 2 37 37 H 1.08996 * 109.47056 * 299.99637 * 5 4 3 38 38 H 1.08997 * 109.47606 * 59.99764 * 5 4 3 39 39 H 1.09001 * 110.51529 * 237.29257 * 10 8 7 40 40 H 1.09002 * 110.51100 * 359.86033 * 10 8 7 41 41 H 1.08998 * 110.37515 * 142.80993 * 11 10 8 42 42 H 1.08994 * 110.37412 * 265.15146 * 11 10 8 43 43 H 1.09005 * 110.37511 * 281.68055 * 13 12 11 44 44 H 1.09003 * 110.37286 * 159.34781 * 13 12 11 45 45 H 1.08999 * 109.47340 * 67.76009 * 18 17 16 46 46 H 1.09002 * 109.47210 * 187.75835 * 18 17 16 47 47 H 1.09003 * 109.47245 * 307.75785 * 18 17 16 48 48 H 1.08997 * 109.47003 * 179.97438 * 21 19 17 49 49 H 1.08995 * 109.47254 * 299.99555 * 21 19 17 50 50 H 1.09007 * 109.47084 * 59.99745 * 21 19 17 51 51 H 0.97005 * 119.99806 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 -0.0006 5 6 3.8255 2.9383 0.0001 6 7 5.2859 3.0539 -0.0011 7 6 6.1140 3.0439 -1.0892 8 6 5.6937 2.9094 -2.5301 9 1 4.6148 2.7714 -2.6010 10 6 6.1355 4.1482 -3.3409 11 6 7.0944 3.5760 -4.4082 12 8 6.7079 2.1913 -4.5470 13 6 6.4379 1.7351 -3.2036 14 7 7.3337 3.1717 -0.6492 15 7 7.3327 3.2605 0.6330 16 6 6.1016 3.1992 1.0831 17 7 5.7051 3.2664 2.4093 18 6 6.1741 4.5091 3.0366 19 6 6.1696 2.0908 3.1578 20 1 5.9005 1.1848 2.6149 21 6 7.6896 2.1566 3.3187 22 6 5.5208 2.0729 4.5179 23 1 4.8326 2.8566 4.7983 24 6 5.8065 1.0566 5.4047 25 7 6.6457 0.1030 5.0637 26 14 5.0019 1.0339 7.0903 27 1 3.7258 0.2776 7.0196 28 1 5.9118 0.3794 8.0645 29 1 4.7282 2.4267 7.5270 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8934 -0.5139 0.8899 34 1 1.8933 -0.5138 -0.8901 35 1 3.8341 0.9764 0.8892 36 1 3.8334 0.9766 -0.8908 37 1 3.4224 3.4223 -0.8894 38 1 3.4232 3.4214 0.8905 39 1 5.2753 4.6214 -3.8146 40 1 6.6557 4.8592 -2.6990 41 1 6.9668 4.1021 -5.3542 42 1 8.1275 3.6493 -4.0686 43 1 7.3704 1.5261 -2.6792 44 1 5.8061 0.8472 -3.2241 45 1 5.6533 5.3584 2.5945 46 1 5.9704 4.4752 4.1069 47 1 7.2467 4.6158 2.8741 48 1 8.0342 1.2846 3.8745 49 1 8.1589 2.1696 2.3350 50 1 7.9587 3.0627 3.8617 51 1 6.8465 -0.6123 5.6875 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001768152825.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:06 Heat of formation + Delta-G solvation = 2.826764 kcal Electronic energy + Delta-G solvation = -31334.172278 eV Core-core repulsion = 27270.936827 eV Total energy + Delta-G solvation = -4063.235451 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.71576 -39.38148 -38.22265 -37.26170 -35.11869 -33.29237 -32.64402 -31.61616 -29.88967 -29.11204 -28.69153 -27.99679 -25.43729 -25.20019 -23.72769 -23.36756 -22.89620 -22.33333 -21.46985 -19.89881 -19.43192 -17.34897 -16.77999 -16.44240 -16.37678 -16.31537 -15.84894 -15.65578 -15.34640 -15.17358 -14.70140 -14.38769 -14.33080 -13.91817 -13.63689 -13.16239 -13.01829 -12.60150 -12.46488 -12.37397 -12.28305 -12.13137 -11.75146 -11.57838 -11.52436 -11.36616 -11.30887 -11.24308 -11.20232 -11.01957 -10.94879 -10.80719 -10.60092 -10.25893 -10.16302 -10.02014 -9.92453 -9.84099 -9.70237 -8.97343 -8.54786 -8.48384 -7.79890 -6.11489 -4.17833 1.97446 2.41447 3.17683 3.24566 3.31687 3.34368 3.58775 3.77517 4.28661 4.35927 4.42034 4.57227 4.59339 4.66383 4.84761 4.85817 4.93631 5.01160 5.11476 5.12336 5.16792 5.20540 5.29627 5.43622 5.51163 5.54690 5.56510 5.66149 5.69608 5.70298 5.74538 5.77170 5.80453 5.94094 5.97764 6.13937 6.29479 6.36342 6.54866 6.59112 6.76304 6.89920 7.00488 7.04161 7.12700 7.43673 7.58313 7.71237 7.87785 8.20589 8.39955 8.85686 9.12354 9.47244 10.95084 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.009590 B = 0.004028 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2919.021221 B = 6949.808754 C = 8954.269269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.058 3.942 3 O -0.385 6.385 4 C 0.052 3.948 5 C 0.119 3.881 6 N -0.466 5.466 7 C 0.161 3.839 8 C -0.029 4.029 9 H 0.097 0.903 10 C -0.141 4.141 11 C 0.048 3.952 12 O -0.374 6.374 13 C 0.059 3.941 14 N -0.283 5.283 15 N -0.310 5.310 16 C 0.383 3.617 17 N -0.471 5.471 18 C 0.045 3.955 19 C 0.228 3.772 20 H 0.033 0.967 21 C -0.174 4.174 22 C -0.507 4.507 23 H 0.066 0.934 24 C 0.063 3.937 25 N -0.889 5.889 26 Si 0.900 3.100 27 H -0.281 1.281 28 H -0.286 1.286 29 H -0.273 1.273 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.047 0.953 35 H 0.068 0.932 36 H 0.049 0.951 37 H 0.093 0.907 38 H 0.115 0.885 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.067 0.933 43 H 0.077 0.923 44 H 0.094 0.906 45 H 0.045 0.955 46 H 0.091 0.909 47 H 0.040 0.960 48 H 0.086 0.914 49 H 0.035 0.965 50 H 0.031 0.969 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.737 4.109 -15.280 17.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.018 4.018 3 O -0.304 6.304 4 C -0.026 4.026 5 C -0.005 4.005 6 N -0.161 5.161 7 C -0.106 4.106 8 C -0.050 4.050 9 H 0.115 0.885 10 C -0.180 4.180 11 C -0.029 4.029 12 O -0.292 6.292 13 C -0.019 4.019 14 N -0.124 5.124 15 N -0.153 5.153 16 C 0.027 3.973 17 N -0.197 5.197 18 C -0.103 4.103 19 C 0.123 3.877 20 H 0.051 0.949 21 C -0.234 4.234 22 C -0.546 4.546 23 H 0.084 0.916 24 C -0.140 4.140 25 N -0.527 5.527 26 Si 0.728 3.272 27 H -0.207 1.207 28 H -0.212 1.212 29 H -0.198 1.198 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.087 0.913 36 H 0.067 0.933 37 H 0.112 0.888 38 H 0.133 0.867 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.110 0.890 42 H 0.085 0.915 43 H 0.095 0.905 44 H 0.112 0.888 45 H 0.064 0.936 46 H 0.109 0.891 47 H 0.059 0.941 48 H 0.105 0.895 49 H 0.054 0.946 50 H 0.051 0.949 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.823 4.082 -15.351 17.288 hybrid contribution -0.907 -0.421 1.319 1.655 sum -7.730 3.661 -14.032 16.434 Atomic orbital electron populations 1.21734 0.93586 1.02268 1.03102 1.22490 0.95532 0.83276 1.00523 1.87765 1.19914 1.27102 1.95592 1.22684 0.82034 0.96165 1.01719 1.21448 0.76183 0.96966 1.05911 1.46212 1.08112 1.55093 1.06656 1.24166 0.87792 1.08123 0.90522 1.20834 1.01205 0.97355 0.85625 0.88494 1.22975 1.00376 0.97148 0.97510 1.23418 0.98286 0.82207 0.98981 1.89112 1.88505 1.25673 1.25937 1.23460 1.00020 0.95688 0.82748 1.73913 1.16988 1.17218 1.04247 1.74796 1.17014 1.21287 1.02231 1.22983 0.84908 0.99644 0.89749 1.59428 1.59000 1.06926 0.94366 1.22257 0.98511 0.88604 1.00892 1.19385 0.91733 0.84314 0.92242 0.94890 1.22452 0.98589 1.02414 0.99901 1.20990 1.26126 1.09868 0.97572 0.91617 1.24902 0.95082 0.95341 0.98629 1.69911 1.34208 1.12477 1.36115 0.86465 0.79039 0.78288 0.83422 1.20682 1.21224 1.19764 0.91064 0.91615 0.92014 0.92741 0.93468 0.91328 0.93265 0.88824 0.86688 0.90143 0.89553 0.89008 0.91496 0.90510 0.88806 0.93638 0.89075 0.94143 0.89498 0.94571 0.94940 0.92781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 10.28 37.16 0.38 -0.98 16 2 C 0.06 0.65 6.66 37.16 0.25 0.90 16 3 O -0.39 -5.13 10.34 -35.23 -0.36 -5.49 16 4 C 0.05 0.71 6.26 37.16 0.23 0.94 16 5 C 0.12 1.61 6.18 -4.04 -0.02 1.58 16 6 N -0.47 -7.66 2.81 -114.09 -0.32 -7.98 16 7 C 0.16 2.51 6.42 -154.02 -0.99 1.52 16 8 C -0.03 -0.33 3.52 -90.21 -0.32 -0.65 16 9 H 0.10 0.95 7.16 -51.93 -0.37 0.58 16 10 C -0.14 -1.41 6.72 -25.17 -0.17 -1.58 16 11 C 0.05 0.47 7.63 37.93 0.29 0.76 16 12 O -0.37 -4.52 11.65 -35.23 -0.41 -4.93 16 13 C 0.06 0.69 7.17 37.93 0.27 0.96 16 14 N -0.28 -5.35 11.90 32.99 0.39 -4.96 16 15 N -0.31 -6.60 9.81 30.32 0.30 -6.30 16 16 C 0.38 7.67 6.26 -318.86 -2.00 5.67 16 17 N -0.47 -9.96 4.72 -176.08 -0.83 -10.79 16 18 C 0.04 0.87 8.49 60.06 0.51 1.38 16 19 C 0.23 5.61 2.28 -68.86 -0.16 5.46 16 20 H 0.03 0.91 8.05 -51.93 -0.42 0.50 16 21 C -0.17 -4.34 8.18 37.16 0.30 -4.04 16 22 C -0.51 -13.19 7.80 -34.44 -0.27 -13.46 16 23 H 0.07 1.69 7.20 -52.49 -0.38 1.31 16 24 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 25 N -0.89 -24.67 11.32 55.43 0.63 -24.05 16 26 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 28 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 29 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 35 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.09 1.00 7.48 -51.93 -0.39 0.61 16 38 H 0.11 1.67 8.13 -51.93 -0.42 1.25 16 39 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.09 0.97 7.73 -51.93 -0.40 0.57 16 41 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.08 1.04 7.64 -51.93 -0.40 0.65 16 44 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.09 1.81 6.62 -51.93 -0.34 1.46 16 47 H 0.04 0.81 6.67 -51.93 -0.35 0.46 16 48 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 49 H 0.04 0.89 6.00 -51.93 -0.31 0.58 16 50 H 0.03 0.77 6.59 -51.93 -0.34 0.43 16 51 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 403.93 15.07 6.09 6.09 Total: -1.00 -30.42 403.93 -9.97 -40.38 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -8.64 Total: 2.44 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -1.78 Total: 0.04 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: 0.17 Total: -54.08 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: -0.77 Total: -10.42 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -30.42 -9.97 -40.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001768152825.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.210 kcal (2) G-P(sol) polarization free energy of solvation -30.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds