Wall clock time and date at job start Tue Mar 31 2020 22:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42898 * 109.47401 * 2 1 4 4 C 1.42902 * 114.00160 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47043 * 180.02562 * 4 3 2 6 6 N 1.46499 * 109.46987 * 180.02562 * 5 4 3 7 7 C 1.36739 * 127.13966 * 85.99529 * 6 5 4 8 8 C 1.50695 * 126.34632 * 359.94463 * 7 6 5 9 9 H 1.09002 * 110.45877 * 357.39080 * 8 7 6 10 10 C 1.54503 * 110.51481 * 120.00060 * 8 7 6 11 11 C 1.54474 * 104.06676 * 118.64048 * 10 8 7 12 12 O 1.44430 * 104.79961 * 23.98312 * 11 10 8 13 13 C 1.44423 * 105.27423 * 319.48515 * 12 11 10 14 14 N 1.30292 * 107.30175 * 179.97438 * 7 6 5 15 15 N 1.28520 * 110.05963 * 0.02562 * 14 7 6 16 16 C 1.31219 * 109.85791 * 359.73759 * 15 14 7 17 17 N 1.38588 * 126.47369 * 180.26308 * 16 15 14 18 18 C 1.46894 * 111.00013 * 57.29563 * 17 16 15 19 19 C 1.46903 * 110.99433 * 293.34284 * 17 16 15 20 20 H 1.08994 * 109.47246 * 309.99536 * 19 17 16 21 21 C 1.52997 * 109.47186 * 70.00318 * 19 17 16 22 22 C 1.50707 * 109.46571 * 189.99873 * 19 17 16 23 23 H 1.07999 * 119.99898 * 359.97438 * 22 19 17 24 24 C 1.37871 * 119.99896 * 180.02562 * 22 19 17 25 25 N 1.31518 * 119.99912 * 0.02562 * 24 22 19 26 26 Si 1.86797 * 120.00226 * 180.02562 * 24 22 19 27 27 H 1.48498 * 109.47422 * 89.99818 * 26 24 22 28 28 H 1.48499 * 109.47457 * 210.00110 * 26 24 22 29 29 H 1.48511 * 109.47178 * 330.00001 * 26 24 22 30 30 H 1.08992 * 109.47096 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46937 * 300.00073 * 1 2 3 32 32 H 1.08993 * 109.46952 * 59.99741 * 1 2 3 33 33 H 1.08997 * 109.47431 * 120.00347 * 2 1 3 34 34 H 1.09008 * 109.46782 * 240.00244 * 2 1 3 35 35 H 1.09005 * 109.46747 * 299.99772 * 4 3 2 36 36 H 1.08997 * 109.47112 * 59.99739 * 4 3 2 37 37 H 1.08996 * 109.47056 * 299.99637 * 5 4 3 38 38 H 1.08997 * 109.47606 * 59.99764 * 5 4 3 39 39 H 1.09001 * 110.51529 * 237.29257 * 10 8 7 40 40 H 1.09002 * 110.51100 * 359.86033 * 10 8 7 41 41 H 1.08998 * 110.37515 * 142.80993 * 11 10 8 42 42 H 1.08994 * 110.37412 * 265.15146 * 11 10 8 43 43 H 1.09005 * 110.37511 * 281.68055 * 13 12 11 44 44 H 1.09003 * 110.37286 * 159.34781 * 13 12 11 45 45 H 1.08999 * 109.47340 * 67.76009 * 18 17 16 46 46 H 1.09002 * 109.47210 * 187.75835 * 18 17 16 47 47 H 1.09003 * 109.47245 * 307.75785 * 18 17 16 48 48 H 1.08997 * 109.47003 * 179.97438 * 21 19 17 49 49 H 1.08995 * 109.47254 * 299.99555 * 21 19 17 50 50 H 1.09007 * 109.47084 * 59.99745 * 21 19 17 51 51 H 0.97005 * 119.99806 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 -0.0006 5 6 3.8255 2.9383 0.0001 6 7 5.2859 3.0539 -0.0011 7 6 6.1140 3.0439 -1.0892 8 6 5.6937 2.9094 -2.5301 9 1 4.6148 2.7714 -2.6010 10 6 6.1355 4.1482 -3.3409 11 6 7.0944 3.5760 -4.4082 12 8 6.7079 2.1913 -4.5470 13 6 6.4379 1.7351 -3.2036 14 7 7.3337 3.1717 -0.6492 15 7 7.3327 3.2605 0.6330 16 6 6.1016 3.1992 1.0831 17 7 5.7051 3.2664 2.4093 18 6 6.1741 4.5091 3.0366 19 6 6.1696 2.0908 3.1578 20 1 5.9005 1.1848 2.6149 21 6 7.6896 2.1566 3.3187 22 6 5.5208 2.0729 4.5179 23 1 4.8326 2.8566 4.7983 24 6 5.8065 1.0566 5.4047 25 7 6.6457 0.1030 5.0637 26 14 5.0019 1.0339 7.0903 27 1 3.7258 0.2776 7.0196 28 1 5.9118 0.3794 8.0645 29 1 4.7282 2.4267 7.5270 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8934 -0.5139 0.8899 34 1 1.8933 -0.5138 -0.8901 35 1 3.8341 0.9764 0.8892 36 1 3.8334 0.9766 -0.8908 37 1 3.4224 3.4223 -0.8894 38 1 3.4232 3.4214 0.8905 39 1 5.2753 4.6214 -3.8146 40 1 6.6557 4.8592 -2.6990 41 1 6.9668 4.1021 -5.3542 42 1 8.1275 3.6493 -4.0686 43 1 7.3704 1.5261 -2.6792 44 1 5.8061 0.8472 -3.2241 45 1 5.6533 5.3584 2.5945 46 1 5.9704 4.4752 4.1069 47 1 7.2467 4.6158 2.8741 48 1 8.0342 1.2846 3.8745 49 1 8.1589 2.1696 2.3350 50 1 7.9587 3.0627 3.8617 51 1 6.8465 -0.6123 5.6875 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001768152825.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:05 Heat of formation + Delta-G solvation = -14.951192 kcal Electronic energy + Delta-G solvation = -31334.943188 eV Core-core repulsion = 27270.936827 eV Total energy + Delta-G solvation = -4064.006361 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.12343 -40.30748 -39.25395 -38.98234 -36.38154 -34.96919 -33.96809 -32.55336 -31.17069 -30.54940 -29.93306 -29.34419 -27.32131 -26.99680 -24.90294 -24.42177 -23.75404 -23.35887 -23.09079 -21.15273 -20.94626 -18.61359 -18.25500 -17.83798 -17.58681 -17.29625 -17.17792 -16.86812 -16.76291 -16.49429 -16.05267 -15.60401 -15.48265 -15.21410 -14.87355 -14.73266 -14.35067 -13.98627 -13.47229 -13.38374 -13.34246 -13.23982 -13.13594 -13.09669 -12.92666 -12.74593 -12.67439 -12.60953 -12.42072 -12.33466 -12.24198 -12.20227 -12.10872 -12.03391 -11.87703 -11.50481 -11.21737 -10.94994 -10.82021 -10.72735 -10.54539 -10.00589 -9.51844 -8.15821 -6.29281 0.60296 1.13192 1.43512 1.44584 1.54986 1.72387 2.38372 2.54105 2.80515 3.09055 3.14820 3.36082 3.47209 3.58110 3.67661 3.79003 3.95502 4.05721 4.10338 4.13370 4.15859 4.29827 4.30830 4.34217 4.37765 4.45553 4.54606 4.60949 4.65048 4.68584 4.70884 4.83419 4.85722 4.87585 4.97391 4.98854 5.01134 5.02656 5.05377 5.07066 5.10909 5.25935 5.35825 5.58997 5.60195 5.72303 5.78402 5.99107 6.04142 6.18545 6.58429 6.80247 7.39914 7.67946 8.90789 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.009590 B = 0.004028 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2919.021221 B = 6949.808754 C = 8954.269269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.049 3.951 3 O -0.391 6.391 4 C 0.061 3.939 5 C 0.117 3.883 6 N -0.461 5.461 7 C 0.189 3.811 8 C -0.029 4.029 9 H 0.128 0.872 10 C -0.135 4.135 11 C 0.044 3.956 12 O -0.383 6.383 13 C 0.060 3.940 14 N -0.316 5.316 15 N -0.341 5.341 16 C 0.360 3.640 17 N -0.468 5.468 18 C 0.050 3.950 19 C 0.241 3.759 20 H -0.006 1.006 21 C -0.156 4.156 22 C -0.516 4.516 23 H 0.069 0.931 24 C 0.015 3.985 25 N -0.920 5.920 26 Si 0.965 3.035 27 H -0.276 1.276 28 H -0.286 1.286 29 H -0.262 1.262 30 H 0.090 0.910 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.038 0.962 34 H 0.065 0.935 35 H 0.027 0.973 36 H 0.067 0.933 37 H 0.135 0.865 38 H 0.104 0.896 39 H 0.112 0.888 40 H 0.071 0.929 41 H 0.120 0.880 42 H 0.055 0.945 43 H 0.051 0.949 44 H 0.111 0.889 45 H 0.073 0.927 46 H 0.084 0.916 47 H 0.029 0.971 48 H 0.060 0.940 49 H 0.032 0.968 50 H 0.035 0.965 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.121 5.096 -16.976 20.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.027 4.027 3 O -0.310 6.310 4 C -0.017 4.017 5 C -0.005 4.005 6 N -0.155 5.155 7 C -0.079 4.079 8 C -0.050 4.050 9 H 0.146 0.854 10 C -0.173 4.173 11 C -0.032 4.032 12 O -0.301 6.301 13 C -0.018 4.018 14 N -0.156 5.156 15 N -0.184 5.184 16 C 0.003 3.997 17 N -0.193 5.193 18 C -0.098 4.098 19 C 0.135 3.865 20 H 0.012 0.988 21 C -0.216 4.216 22 C -0.554 4.554 23 H 0.087 0.913 24 C -0.184 4.184 25 N -0.560 5.560 26 Si 0.790 3.210 27 H -0.202 1.202 28 H -0.212 1.212 29 H -0.187 1.187 30 H 0.108 0.892 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.056 0.944 34 H 0.083 0.917 35 H 0.045 0.955 36 H 0.085 0.915 37 H 0.153 0.847 38 H 0.123 0.877 39 H 0.130 0.870 40 H 0.090 0.910 41 H 0.138 0.862 42 H 0.073 0.927 43 H 0.069 0.931 44 H 0.130 0.870 45 H 0.091 0.909 46 H 0.103 0.897 47 H 0.048 0.952 48 H 0.079 0.921 49 H 0.050 0.950 50 H 0.054 0.946 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.222 5.090 -17.066 20.054 hybrid contribution -0.159 -0.745 1.707 1.869 sum -9.380 4.344 -15.359 18.514 Atomic orbital electron populations 1.21743 0.91772 1.03579 1.03121 1.22722 0.97023 0.82369 1.00613 1.87756 1.19219 1.28439 1.95568 1.22501 0.82521 0.96086 1.00582 1.21674 0.74329 0.97074 1.07427 1.46323 1.09183 1.54267 1.05754 1.24959 0.86685 1.04419 0.91873 1.21153 1.02882 0.98274 0.82732 0.85441 1.22984 1.01362 0.96044 0.96948 1.23575 0.97721 0.81495 1.00429 1.89114 1.88521 1.26829 1.25683 1.23412 0.99217 0.96521 0.82685 1.73850 1.18947 1.19401 1.03358 1.74668 1.18141 1.22010 1.03613 1.22859 0.85515 1.01537 0.89816 1.59283 1.58831 1.06217 0.94998 1.22251 0.98155 0.88738 1.00623 1.19003 0.91173 0.84481 0.91864 0.98792 1.22244 0.99041 1.01143 0.99145 1.21237 1.26110 1.09947 0.98149 0.91285 1.25715 0.95508 0.94909 1.02263 1.70054 1.35468 1.13093 1.37336 0.85447 0.78002 0.78683 0.78866 1.20196 1.21214 1.18653 0.89155 0.92523 0.91006 0.94379 0.91714 0.95459 0.91463 0.84701 0.87741 0.86978 0.91010 0.86217 0.92686 0.93109 0.87044 0.90866 0.89725 0.95249 0.92126 0.94958 0.94619 0.92842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 10.28 71.98 0.74 -1.62 16 2 C 0.05 1.04 6.66 71.98 0.48 1.52 16 3 O -0.39 -9.85 10.34 -148.98 -1.54 -11.39 16 4 C 0.06 1.63 6.26 71.98 0.45 2.08 16 5 C 0.12 2.97 6.18 86.38 0.53 3.51 16 6 N -0.46 -14.84 2.81 -514.87 -1.45 -16.28 16 7 C 0.19 5.68 6.42 137.64 0.88 6.56 16 8 C -0.03 -0.59 3.52 -10.53 -0.04 -0.63 16 9 H 0.13 1.88 7.16 -2.39 -0.02 1.86 16 10 C -0.13 -2.27 6.72 31.61 0.21 -2.06 16 11 C 0.04 0.77 7.63 72.48 0.55 1.32 16 12 O -0.38 -8.36 11.65 -148.98 -1.74 -10.10 16 13 C 0.06 1.30 7.17 72.49 0.52 1.82 16 14 N -0.32 -12.09 11.90 -49.54 -0.59 -12.68 16 15 N -0.34 -14.91 9.81 -58.00 -0.57 -15.47 16 16 C 0.36 14.66 6.26 260.11 1.63 16.29 16 17 N -0.47 -20.21 4.72 -710.99 -3.36 -23.57 16 18 C 0.05 1.93 8.49 127.69 1.08 3.01 16 19 C 0.24 12.35 2.28 44.17 0.10 12.45 16 20 H -0.01 -0.34 8.05 -2.39 -0.02 -0.36 16 21 C -0.16 -8.14 8.18 71.98 0.59 -7.55 16 22 C -0.52 -27.42 7.80 25.60 0.20 -27.22 16 23 H 0.07 3.56 7.20 -2.91 -0.02 3.54 16 24 C 0.02 0.82 5.30 84.65 0.45 1.27 16 25 N -0.92 -52.66 11.32 21.45 0.24 -52.42 16 26 Si 0.96 42.41 29.54 68.60 2.03 44.43 16 27 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 28 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 29 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 30 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 35 H 0.03 0.95 8.14 -2.38 -0.02 0.93 16 36 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.14 2.33 7.48 -2.39 -0.02 2.31 16 38 H 0.10 2.92 8.13 -2.39 -0.02 2.90 16 39 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.07 1.46 7.73 -2.39 -0.02 1.44 16 41 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.05 1.38 7.64 -2.38 -0.02 1.36 16 44 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 46 H 0.08 3.36 6.62 -2.39 -0.02 3.35 16 47 H 0.03 1.19 6.67 -2.39 -0.02 1.17 16 48 H 0.06 3.46 6.07 -2.39 -0.01 3.45 16 49 H 0.03 1.66 6.00 -2.39 -0.01 1.65 16 50 H 0.03 1.77 6.59 -2.38 -0.02 1.75 16 51 H 0.26 14.31 8.31 -92.70 -0.77 13.54 16 Total: -1.00 -68.75 403.93 2.33 -66.42 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: 0.91 Total: 20.30 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: 8.39 Total: 10.75 kcal Atomic # 7 Polarization: -114.70 SS G_CDS: -5.72 Total: -120.42 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -3.28 Total: -21.49 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.43 kcal Total: -68.75 2.33 -66.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001768152825.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.472 kcal (2) G-P(sol) polarization free energy of solvation -68.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds