Wall clock time and date at job start Tue Mar 31 2020 21:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47290 * 2 1 4 4 C 1.36736 * 127.14060 * 92.48317 * 3 2 1 5 5 C 1.50700 * 126.34834 * 359.97438 * 4 3 2 6 6 C 1.53001 * 109.47157 * 95.92842 * 5 4 3 7 7 H 1.08998 * 109.47239 * 56.01020 * 6 5 4 8 8 O 1.42898 * 109.47379 * 296.00893 * 6 5 4 9 9 C 1.50704 * 109.46769 * 176.00969 * 6 5 4 10 10 H 1.08001 * 120.00338 * 359.97438 * 9 6 5 11 11 C 1.37883 * 119.99791 * 180.02562 * 9 6 5 12 12 N 1.31512 * 119.99725 * 359.97438 * 11 9 6 13 13 Si 1.86792 * 120.00047 * 179.97438 * 11 9 6 14 14 H 1.48504 * 109.47494 * 89.99748 * 13 11 9 15 15 H 1.48499 * 109.47426 * 209.99746 * 13 11 9 16 16 H 1.48499 * 109.47292 * 329.99872 * 13 11 9 17 17 N 1.30302 * 107.30781 * 180.02562 * 4 3 2 18 18 N 1.28532 * 110.05040 * 359.73383 * 17 4 3 19 19 C 1.31218 * 109.85793 * 0.44693 * 18 17 4 20 20 N 1.38581 * 126.46785 * 179.82628 * 19 18 17 21 21 C 1.46897 * 111.00209 * 104.64612 * 20 19 18 22 22 C 1.46900 * 110.99951 * 340.68870 * 20 19 18 23 23 C 1.53000 * 109.47056 * 198.99303 * 22 20 19 24 24 H 1.09001 * 109.57190 * 304.77714 * 23 22 20 25 25 C 1.53185 * 109.52444 * 64.93122 * 23 22 20 26 26 C 1.53180 * 109.03633 * 176.88693 * 25 23 22 27 27 C 1.53096 * 109.16249 * 303.02334 * 26 25 23 28 28 O 1.42899 * 109.41729 * 57.60878 * 27 26 25 29 29 C 1.42903 * 114.09580 * 298.84350 * 28 27 26 30 30 H 1.09007 * 109.47064 * 304.98461 * 1 2 3 31 31 H 1.09003 * 109.47252 * 64.97709 * 1 2 3 32 32 H 1.08997 * 109.47609 * 184.97778 * 1 2 3 33 33 H 1.08998 * 109.46831 * 239.99437 * 2 1 3 34 34 H 1.09001 * 109.46478 * 119.99667 * 2 1 3 35 35 H 1.08997 * 109.47129 * 215.92920 * 5 4 3 36 36 H 1.09004 * 109.46880 * 335.93323 * 5 4 3 37 37 H 0.96701 * 114.00053 * 304.19500 * 8 6 5 38 38 H 0.97006 * 120.00068 * 180.02562 * 12 11 9 39 39 H 1.09001 * 109.46674 * 301.27523 * 21 20 19 40 40 H 1.08997 * 109.47160 * 61.27805 * 21 20 19 41 41 H 1.08999 * 109.46823 * 181.27892 * 21 20 19 42 42 H 1.08994 * 109.47141 * 78.98903 * 22 20 19 43 43 H 1.09000 * 109.47164 * 318.98579 * 22 20 19 44 44 H 1.08997 * 109.54108 * 296.75157 * 25 23 22 45 45 H 1.08997 * 109.53835 * 57.02057 * 25 23 22 46 46 H 1.09007 * 109.51844 * 62.92598 * 26 25 23 47 47 H 1.08994 * 109.52015 * 183.05314 * 26 25 23 48 48 H 1.08999 * 109.47836 * 177.59183 * 27 26 25 49 49 H 1.09003 * 109.47535 * 297.60928 * 27 26 25 50 50 H 1.09009 * 109.48116 * 301.17282 * 29 28 27 51 51 H 1.09009 * 109.48008 * 181.14787 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3381 2.1438 1.0890 5 6 2.2538 1.7193 2.5325 6 6 3.6260 1.2313 3.0016 7 1 4.3661 2.0142 2.8360 8 8 3.9942 0.0640 2.2641 9 6 3.5659 0.8994 4.4704 10 1 2.6416 1.0244 5.0149 11 6 4.6912 0.4371 5.1192 12 7 5.8168 0.2854 4.4562 13 14 4.6170 0.0264 6.9399 14 1 4.2363 -1.3988 7.1108 15 1 5.9484 0.2601 7.5549 16 1 3.6074 0.8911 7.6018 17 7 2.7281 3.3059 0.6473 18 7 2.6822 3.3274 -0.6370 19 6 2.2479 2.1737 -1.0868 20 7 2.0630 1.8243 -2.4150 21 6 3.1319 0.9292 -2.8776 22 6 1.9713 3.0185 -3.2656 23 6 1.3120 2.6479 -4.5956 24 1 1.8619 1.8294 -5.0602 25 6 -0.1361 2.2149 -4.3461 26 6 -0.8086 1.9214 -5.6907 27 6 -0.7187 3.1647 -6.5795 28 8 0.6523 3.5316 -6.7460 29 6 1.3198 3.8630 -5.5267 30 1 -0.3633 0.5893 0.8420 31 1 -0.3634 0.4347 -0.9312 32 1 -0.3634 -1.0237 0.0892 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8901 35 1 1.9414 2.5667 3.1427 36 1 1.5278 0.9124 2.6321 37 1 3.3468 -0.6526 2.3132 38 1 6.6085 -0.0402 4.9126 39 1 4.0963 1.4228 -2.7579 40 1 3.1176 0.0118 -2.2892 41 1 2.9747 0.6889 -3.9291 42 1 2.9715 3.4092 -3.4523 43 1 1.3726 3.7778 -2.7626 44 1 -0.1468 1.3163 -3.7292 45 1 -0.6731 3.0150 -3.8367 46 1 -0.3014 1.0883 -6.1774 47 1 -1.8550 1.6649 -5.5262 48 1 -1.1579 2.9479 -7.5532 49 1 -1.2608 3.9862 -6.1111 50 1 0.8046 4.6938 -5.0444 51 1 2.3493 4.1494 -5.7421 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772193353.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:03 Heat of formation + Delta-G solvation = -22.240537 kcal Electronic energy + Delta-G solvation = -30822.869439 eV Core-core repulsion = 26758.546988 eV Total energy + Delta-G solvation = -4064.322451 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.58746 -39.82700 -37.64649 -36.25485 -35.29779 -33.91591 -32.21773 -32.05018 -31.27483 -30.25024 -28.40043 -27.16555 -25.73083 -25.28946 -24.71507 -23.73871 -22.51029 -21.65116 -20.46983 -20.19389 -19.74482 -17.37561 -16.95125 -16.58014 -16.32246 -16.00837 -15.85272 -15.07458 -15.01194 -14.86907 -14.65252 -14.55944 -14.22569 -13.89190 -13.74874 -13.68945 -13.23543 -12.98104 -12.87820 -12.66955 -12.52430 -12.34075 -12.25533 -11.94167 -11.48339 -11.40401 -11.26461 -11.21773 -11.09278 -11.03006 -10.92076 -10.84553 -10.76809 -10.53750 -10.21289 -10.14701 -9.79559 -9.75658 -9.50762 -9.10305 -8.63750 -8.44260 -7.92783 -6.06541 -4.26233 2.14639 2.52269 3.24007 3.28131 3.32182 3.35094 3.53829 3.75560 4.33648 4.43102 4.50353 4.62623 4.66902 4.69975 4.81809 4.90711 4.98258 5.02686 5.08106 5.10167 5.15014 5.19441 5.24557 5.29101 5.35424 5.42643 5.44307 5.52043 5.53016 5.60554 5.61710 5.65193 5.73565 5.78626 5.83706 5.97428 6.02118 6.07308 6.11950 6.22307 6.31552 6.36449 6.63397 6.66152 6.87095 6.93227 7.47372 7.63579 7.76682 8.06611 8.74395 9.20634 9.22866 9.49825 10.97668 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.028382 B = 0.002372 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.289507 B =11802.204226 C =12066.212628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.109 3.891 3 N -0.465 5.465 4 C 0.222 3.778 5 C -0.064 4.064 6 C 0.238 3.762 7 H 0.065 0.935 8 O -0.561 6.561 9 C -0.573 4.573 10 H 0.059 0.941 11 C 0.081 3.919 12 N -0.856 5.856 13 Si 0.891 3.109 14 H -0.280 1.280 15 H -0.285 1.285 16 H -0.272 1.272 17 N -0.298 5.298 18 N -0.323 5.323 19 C 0.330 3.670 20 N -0.453 5.453 21 C 0.023 3.977 22 C 0.079 3.921 23 C -0.118 4.118 24 H 0.082 0.918 25 C -0.109 4.109 26 C -0.157 4.157 27 C 0.059 3.941 28 O -0.382 6.382 29 C 0.066 3.934 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.071 0.929 37 H 0.336 0.664 38 H 0.261 0.739 39 H 0.042 0.958 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.056 0.944 43 H 0.086 0.914 44 H 0.077 0.923 45 H 0.060 0.940 46 H 0.070 0.930 47 H 0.071 0.929 48 H 0.091 0.909 49 H 0.049 0.951 50 H 0.053 0.947 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.756 -0.713 -19.745 24.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.014 4.014 3 N -0.159 5.159 4 C -0.046 4.046 5 C -0.104 4.104 6 C 0.179 3.821 7 H 0.083 0.917 8 O -0.363 6.363 9 C -0.611 4.611 10 H 0.077 0.923 11 C -0.126 4.126 12 N -0.492 5.492 13 Si 0.719 3.281 14 H -0.206 1.206 15 H -0.211 1.211 16 H -0.197 1.197 17 N -0.137 5.137 18 N -0.167 5.167 19 C -0.027 4.027 20 N -0.177 5.177 21 C -0.124 4.124 22 C -0.049 4.049 23 C -0.137 4.137 24 H 0.100 0.900 25 C -0.147 4.147 26 C -0.194 4.194 27 C -0.018 4.018 28 O -0.301 6.301 29 C -0.011 4.011 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.108 0.892 34 H 0.118 0.882 35 H 0.114 0.886 36 H 0.089 0.911 37 H 0.180 0.820 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.090 0.910 41 H 0.102 0.898 42 H 0.074 0.926 43 H 0.104 0.896 44 H 0.096 0.904 45 H 0.079 0.921 46 H 0.088 0.912 47 H 0.090 0.910 48 H 0.109 0.891 49 H 0.068 0.932 50 H 0.071 0.929 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.874 0.780 -20.116 23.896 hybrid contribution -0.373 -1.646 1.519 2.270 sum -13.247 -0.865 -18.598 22.850 Atomic orbital electron populations 1.22116 0.94187 1.02917 1.03062 1.21822 0.95327 0.79378 1.04873 1.46160 1.50465 1.13566 1.05689 1.25241 0.99382 0.87839 0.92120 1.21213 1.03496 1.01905 0.83793 1.19438 0.87772 0.85068 0.89805 0.91706 1.86696 1.49511 1.26009 1.74086 1.21560 0.97083 1.48004 0.94479 0.92282 1.25038 0.95213 0.94399 0.97966 1.70082 1.00535 1.42740 1.35799 0.86634 0.77576 0.78721 0.85214 1.20566 1.21090 1.19701 1.73986 1.19641 1.17926 1.02150 1.74497 1.19304 1.18557 1.04348 1.22275 1.03209 0.89669 0.87502 1.58571 1.44609 1.18122 0.96392 1.22575 0.91862 0.96462 1.01513 1.21972 1.01046 0.90131 0.91736 1.21833 0.97467 0.99337 0.95044 0.90003 1.21541 0.94223 1.02475 0.96432 1.22216 1.01435 0.98908 0.96869 1.22593 0.83102 0.95838 1.00291 1.87937 1.23924 1.88004 1.30187 1.22560 0.98013 0.95354 0.85172 0.91967 0.91757 0.90631 0.89201 0.88197 0.88569 0.91087 0.82043 0.92895 0.93937 0.90951 0.89846 0.92591 0.89573 0.90409 0.92100 0.91171 0.91022 0.89121 0.93248 0.92858 0.88689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 10.24 37.16 0.38 -1.28 16 2 C 0.11 1.33 6.60 -4.04 -0.03 1.31 16 3 N -0.46 -7.55 2.81 -114.09 -0.32 -7.87 16 4 C 0.22 4.34 7.07 -154.01 -1.09 3.25 16 5 C -0.06 -1.25 5.08 -27.88 -0.14 -1.39 16 6 C 0.24 5.80 2.83 -27.88 -0.08 5.72 16 7 H 0.07 1.85 8.14 -51.93 -0.42 1.43 16 8 O -0.56 -13.49 12.27 -35.23 -0.43 -13.92 16 9 C -0.57 -15.03 8.78 -34.44 -0.30 -15.33 16 10 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 11 C 0.08 2.20 5.40 -17.82 -0.10 2.10 16 12 N -0.86 -24.94 12.84 55.43 0.71 -24.23 16 13 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 14 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 15 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 16 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 17 N -0.30 -6.50 12.18 32.99 0.40 -6.10 16 18 N -0.32 -6.39 11.32 30.31 0.34 -6.05 16 19 C 0.33 5.42 6.84 -318.87 -2.18 3.24 16 20 N -0.45 -5.58 4.23 -182.39 -0.77 -6.35 16 21 C 0.02 0.25 9.30 60.06 0.56 0.81 16 22 C 0.08 0.87 3.90 -3.82 -0.01 0.85 16 23 C -0.12 -1.02 2.43 -90.48 -0.22 -1.24 16 24 H 0.08 0.71 6.68 -51.93 -0.35 0.36 16 25 C -0.11 -0.91 5.16 -26.54 -0.14 -1.04 16 26 C -0.16 -1.11 6.14 -26.59 -0.16 -1.27 16 27 C 0.06 0.43 6.84 37.21 0.25 0.69 16 28 O -0.38 -3.70 10.77 -35.23 -0.38 -4.08 16 29 C 0.07 0.57 6.13 37.20 0.23 0.79 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.09 0.96 6.34 -51.93 -0.33 0.63 16 34 H 0.10 1.25 6.10 -51.93 -0.32 0.93 16 35 H 0.10 1.88 8.14 -51.93 -0.42 1.46 16 36 H 0.07 1.21 7.57 -51.93 -0.39 0.82 16 37 H 0.34 6.82 7.76 45.56 0.35 7.17 16 38 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 39 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.78 6.41 -51.93 -0.33 0.45 16 41 H 0.08 0.69 6.62 -51.93 -0.34 0.35 16 42 H 0.06 0.64 8.01 -51.93 -0.42 0.23 16 43 H 0.09 1.08 7.72 -51.93 -0.40 0.68 16 44 H 0.08 0.70 7.85 -51.93 -0.41 0.29 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 50 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 51 H 0.09 0.74 8.14 -51.92 -0.42 0.32 16 LS Contribution 402.97 15.07 6.07 6.07 Total: -1.00 -33.18 402.97 -10.40 -43.57 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -7.97 Total: 6.15 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -3.03 Total: -2.79 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: 0.36 Total: -50.59 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -0.81 Total: -18.00 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.18 -10.40 -43.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772193353.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.331 kcal (2) G-P(sol) polarization free energy of solvation -33.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds