Wall clock time and date at job start Tue Mar 31 2020 21:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47290 * 2 1 4 4 C 1.36736 * 127.14060 * 92.48317 * 3 2 1 5 5 C 1.50700 * 126.34834 * 359.97438 * 4 3 2 6 6 C 1.53001 * 109.47157 * 95.92842 * 5 4 3 7 7 H 1.08998 * 109.47239 * 56.01020 * 6 5 4 8 8 O 1.42898 * 109.47379 * 296.00893 * 6 5 4 9 9 C 1.50704 * 109.46769 * 176.00969 * 6 5 4 10 10 H 1.08001 * 120.00338 * 359.97438 * 9 6 5 11 11 C 1.37883 * 119.99791 * 180.02562 * 9 6 5 12 12 N 1.31512 * 119.99725 * 359.97438 * 11 9 6 13 13 Si 1.86792 * 120.00047 * 179.97438 * 11 9 6 14 14 H 1.48504 * 109.47494 * 89.99748 * 13 11 9 15 15 H 1.48499 * 109.47426 * 209.99746 * 13 11 9 16 16 H 1.48499 * 109.47292 * 329.99872 * 13 11 9 17 17 N 1.30302 * 107.30781 * 180.02562 * 4 3 2 18 18 N 1.28532 * 110.05040 * 359.73383 * 17 4 3 19 19 C 1.31218 * 109.85793 * 0.44693 * 18 17 4 20 20 N 1.38581 * 126.46785 * 179.82628 * 19 18 17 21 21 C 1.46897 * 111.00209 * 104.64612 * 20 19 18 22 22 C 1.46900 * 110.99951 * 340.68870 * 20 19 18 23 23 C 1.53000 * 109.47056 * 198.99303 * 22 20 19 24 24 H 1.09001 * 109.57190 * 304.77714 * 23 22 20 25 25 C 1.53185 * 109.52444 * 64.93122 * 23 22 20 26 26 C 1.53180 * 109.03633 * 176.88693 * 25 23 22 27 27 C 1.53096 * 109.16249 * 303.02334 * 26 25 23 28 28 O 1.42899 * 109.41729 * 57.60878 * 27 26 25 29 29 C 1.42903 * 114.09580 * 298.84350 * 28 27 26 30 30 H 1.09007 * 109.47064 * 304.98461 * 1 2 3 31 31 H 1.09003 * 109.47252 * 64.97709 * 1 2 3 32 32 H 1.08997 * 109.47609 * 184.97778 * 1 2 3 33 33 H 1.08998 * 109.46831 * 239.99437 * 2 1 3 34 34 H 1.09001 * 109.46478 * 119.99667 * 2 1 3 35 35 H 1.08997 * 109.47129 * 215.92920 * 5 4 3 36 36 H 1.09004 * 109.46880 * 335.93323 * 5 4 3 37 37 H 0.96701 * 114.00053 * 304.19500 * 8 6 5 38 38 H 0.97006 * 120.00068 * 180.02562 * 12 11 9 39 39 H 1.09001 * 109.46674 * 301.27523 * 21 20 19 40 40 H 1.08997 * 109.47160 * 61.27805 * 21 20 19 41 41 H 1.08999 * 109.46823 * 181.27892 * 21 20 19 42 42 H 1.08994 * 109.47141 * 78.98903 * 22 20 19 43 43 H 1.09000 * 109.47164 * 318.98579 * 22 20 19 44 44 H 1.08997 * 109.54108 * 296.75157 * 25 23 22 45 45 H 1.08997 * 109.53835 * 57.02057 * 25 23 22 46 46 H 1.09007 * 109.51844 * 62.92598 * 26 25 23 47 47 H 1.08994 * 109.52015 * 183.05314 * 26 25 23 48 48 H 1.08999 * 109.47836 * 177.59183 * 27 26 25 49 49 H 1.09003 * 109.47535 * 297.60928 * 27 26 25 50 50 H 1.09009 * 109.48116 * 301.17282 * 29 28 27 51 51 H 1.09009 * 109.48008 * 181.14787 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3381 2.1438 1.0890 5 6 2.2538 1.7193 2.5325 6 6 3.6260 1.2313 3.0016 7 1 4.3661 2.0142 2.8360 8 8 3.9942 0.0640 2.2641 9 6 3.5659 0.8994 4.4704 10 1 2.6416 1.0244 5.0149 11 6 4.6912 0.4371 5.1192 12 7 5.8168 0.2854 4.4562 13 14 4.6170 0.0264 6.9399 14 1 4.2363 -1.3988 7.1108 15 1 5.9484 0.2601 7.5549 16 1 3.6074 0.8911 7.6018 17 7 2.7281 3.3059 0.6473 18 7 2.6822 3.3274 -0.6370 19 6 2.2479 2.1737 -1.0868 20 7 2.0630 1.8243 -2.4150 21 6 3.1319 0.9292 -2.8776 22 6 1.9713 3.0185 -3.2656 23 6 1.3120 2.6479 -4.5956 24 1 1.8619 1.8294 -5.0602 25 6 -0.1361 2.2149 -4.3461 26 6 -0.8086 1.9214 -5.6907 27 6 -0.7187 3.1647 -6.5795 28 8 0.6523 3.5316 -6.7460 29 6 1.3198 3.8630 -5.5267 30 1 -0.3633 0.5893 0.8420 31 1 -0.3634 0.4347 -0.9312 32 1 -0.3634 -1.0237 0.0892 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8901 35 1 1.9414 2.5667 3.1427 36 1 1.5278 0.9124 2.6321 37 1 3.3468 -0.6526 2.3132 38 1 6.6085 -0.0402 4.9126 39 1 4.0963 1.4228 -2.7579 40 1 3.1176 0.0118 -2.2892 41 1 2.9747 0.6889 -3.9291 42 1 2.9715 3.4092 -3.4523 43 1 1.3726 3.7778 -2.7626 44 1 -0.1468 1.3163 -3.7292 45 1 -0.6731 3.0150 -3.8367 46 1 -0.3014 1.0883 -6.1774 47 1 -1.8550 1.6649 -5.5262 48 1 -1.1579 2.9479 -7.5532 49 1 -1.2608 3.9862 -6.1111 50 1 0.8046 4.6938 -5.0444 51 1 2.3493 4.1494 -5.7421 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772193353.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:02 Heat of formation + Delta-G solvation = -43.384002 kcal Electronic energy + Delta-G solvation = -30823.786288 eV Core-core repulsion = 26758.546988 eV Total energy + Delta-G solvation = -4065.239301 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.97616 -40.55451 -38.67177 -38.03283 -36.54705 -34.70828 -34.27131 -33.07312 -32.49330 -31.35222 -29.93647 -28.22358 -27.22888 -26.22727 -25.72529 -24.75285 -23.71205 -23.04365 -21.57299 -21.37784 -20.81121 -19.16264 -18.20255 -17.68331 -17.19397 -17.02340 -16.75776 -16.65871 -16.42224 -16.11508 -15.78036 -15.55885 -15.50901 -15.22664 -14.91191 -14.61234 -14.51376 -14.39310 -13.97696 -13.53866 -13.38923 -13.25509 -13.16501 -13.14587 -12.87857 -12.79967 -12.77945 -12.60425 -12.38111 -12.17661 -12.10843 -12.02174 -11.94462 -11.64690 -11.41512 -11.32770 -11.18822 -11.02731 -10.71136 -10.66664 -10.39584 -10.18812 -9.36359 -8.12970 -6.39367 0.80477 1.29225 1.42738 1.44878 1.55044 1.81716 2.40708 2.60505 2.98084 3.13566 3.45707 3.66355 3.68014 3.81283 3.86793 3.98068 4.02705 4.07944 4.10367 4.16015 4.25911 4.28213 4.35646 4.40514 4.43242 4.52888 4.53333 4.56795 4.64226 4.68095 4.73731 4.75732 4.84833 4.86010 4.88935 4.96075 4.99479 5.06046 5.16211 5.19749 5.20897 5.32904 5.42552 5.53278 5.62639 5.64409 5.70971 6.03473 6.22704 6.26894 6.71942 7.32909 7.51678 7.77575 8.91777 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.028382 B = 0.002372 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.289507 B =11802.204226 C =12066.212628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.099 3.901 3 N -0.459 5.459 4 C 0.208 3.792 5 C -0.046 4.046 6 C 0.245 3.755 7 H 0.010 0.990 8 O -0.574 6.574 9 C -0.580 4.580 10 H 0.071 0.929 11 C 0.025 3.975 12 N -0.902 5.902 13 Si 0.962 3.038 14 H -0.269 1.269 15 H -0.290 1.290 16 H -0.263 1.263 17 N -0.340 5.340 18 N -0.360 5.360 19 C 0.345 3.655 20 N -0.440 5.440 21 C 0.023 3.977 22 C 0.082 3.918 23 C -0.104 4.104 24 H 0.089 0.911 25 C -0.108 4.108 26 C -0.150 4.150 27 C 0.052 3.948 28 O -0.398 6.398 29 C 0.066 3.934 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.355 0.645 38 H 0.260 0.740 39 H 0.024 0.976 40 H 0.077 0.923 41 H 0.116 0.884 42 H 0.050 0.950 43 H 0.068 0.932 44 H 0.074 0.926 45 H 0.052 0.948 46 H 0.071 0.929 47 H 0.085 0.915 48 H 0.106 0.894 49 H 0.052 0.948 50 H 0.052 0.948 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.892 -2.654 -20.594 26.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.022 4.022 3 N -0.153 5.153 4 C -0.061 4.061 5 C -0.086 4.086 6 C 0.186 3.814 7 H 0.028 0.972 8 O -0.379 6.379 9 C -0.618 4.618 10 H 0.089 0.911 11 C -0.178 4.178 12 N -0.539 5.539 13 Si 0.787 3.213 14 H -0.194 1.194 15 H -0.216 1.216 16 H -0.187 1.187 17 N -0.179 5.179 18 N -0.204 5.204 19 C -0.012 4.012 20 N -0.164 5.164 21 C -0.124 4.124 22 C -0.045 4.045 23 C -0.124 4.124 24 H 0.107 0.893 25 C -0.145 4.145 26 C -0.188 4.188 27 C -0.024 4.024 28 O -0.317 6.317 29 C -0.011 4.011 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.123 0.877 33 H 0.127 0.873 34 H 0.117 0.883 35 H 0.111 0.889 36 H 0.120 0.880 37 H 0.200 0.800 38 H 0.069 0.931 39 H 0.043 0.957 40 H 0.095 0.905 41 H 0.135 0.865 42 H 0.068 0.932 43 H 0.087 0.913 44 H 0.093 0.907 45 H 0.071 0.929 46 H 0.090 0.910 47 H 0.104 0.896 48 H 0.124 0.876 49 H 0.070 0.930 50 H 0.071 0.929 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -15.047 -1.181 -20.975 25.841 hybrid contribution 0.263 -1.053 1.646 1.971 sum -14.784 -2.234 -19.329 24.437 Atomic orbital electron populations 1.22068 0.92101 1.04580 1.02533 1.22217 0.97004 0.77203 1.05802 1.46337 1.49705 1.14648 1.04568 1.25054 1.00224 0.88112 0.92722 1.20880 1.01149 1.02586 0.83972 1.19067 0.88739 0.84035 0.89562 0.97235 1.86618 1.50755 1.26636 1.73852 1.21984 0.97411 1.46882 0.95526 0.91065 1.25932 0.94821 0.94394 1.02624 1.70240 1.01352 1.44462 1.37827 0.85519 0.77359 0.78965 0.79486 1.19409 1.21588 1.18674 1.73869 1.20917 1.19753 1.03404 1.74395 1.21517 1.20776 1.03752 1.22711 1.00698 0.88754 0.89056 1.58807 1.44653 1.18534 0.94455 1.22686 0.90353 0.95795 1.03561 1.21980 1.00688 0.89397 0.92471 1.21723 0.97652 0.99627 0.93358 0.89250 1.21518 0.93837 1.01958 0.97202 1.22171 1.02144 0.98684 0.95760 1.22777 0.82181 0.96131 1.01346 1.87921 1.25067 1.88163 1.30565 1.22570 0.98395 0.95186 0.84984 0.93124 0.91773 0.87653 0.87283 0.88262 0.88885 0.88009 0.80004 0.93115 0.95731 0.90481 0.86536 0.93209 0.91325 0.90724 0.92894 0.91005 0.89626 0.87637 0.92973 0.92938 0.88179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 10.24 71.98 0.74 -1.94 16 2 C 0.10 2.20 6.60 86.38 0.57 2.77 16 3 N -0.46 -14.65 2.81 -514.86 -1.45 -16.10 16 4 C 0.21 8.27 7.07 137.64 0.97 9.24 16 5 C -0.05 -1.80 5.08 29.85 0.15 -1.65 16 6 C 0.24 12.20 2.83 29.85 0.08 12.29 16 7 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 8 O -0.57 -27.85 12.27 -148.98 -1.83 -29.68 16 9 C -0.58 -30.41 8.78 25.60 0.22 -30.18 16 10 H 0.07 3.49 7.74 -2.91 -0.02 3.46 16 11 C 0.02 1.35 5.40 84.66 0.46 1.80 16 12 N -0.90 -53.63 12.84 21.45 0.28 -53.36 16 13 Si 0.96 42.18 29.54 68.60 2.03 44.21 16 14 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 15 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 16 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 17 N -0.34 -15.42 12.18 -49.54 -0.60 -16.02 16 18 N -0.36 -14.73 11.32 -58.00 -0.66 -15.39 16 19 C 0.35 11.31 6.84 260.11 1.78 13.09 16 20 N -0.44 -10.34 4.23 -730.94 -3.09 -13.43 16 21 C 0.02 0.46 9.30 127.69 1.19 1.64 16 22 C 0.08 1.76 3.90 86.30 0.34 2.10 16 23 C -0.10 -1.64 2.43 -10.70 -0.03 -1.67 16 24 H 0.09 1.31 6.68 -2.39 -0.02 1.29 16 25 C -0.11 -1.58 5.16 30.72 0.16 -1.43 16 26 C -0.15 -1.75 6.14 30.69 0.19 -1.56 16 27 C 0.05 0.67 6.84 72.01 0.49 1.16 16 28 O -0.40 -7.07 10.77 -148.98 -1.60 -8.68 16 29 C 0.07 1.05 6.13 72.01 0.44 1.49 16 30 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.11 2.02 6.34 -2.39 -0.02 2.01 16 34 H 0.10 2.25 6.10 -2.39 -0.01 2.24 16 35 H 0.09 3.68 8.14 -2.39 -0.02 3.66 16 36 H 0.10 3.30 7.57 -2.38 -0.02 3.29 16 37 H 0.35 14.06 7.76 -74.06 -0.57 13.49 16 38 H 0.26 14.70 8.31 -92.70 -0.77 13.93 16 39 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.08 1.48 6.41 -2.39 -0.02 1.47 16 41 H 0.12 1.57 6.62 -2.39 -0.02 1.56 16 42 H 0.05 1.14 8.01 -2.39 -0.02 1.12 16 43 H 0.07 1.74 7.72 -2.39 -0.02 1.72 16 44 H 0.07 1.16 7.85 -2.39 -0.02 1.14 16 45 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 47 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 49 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 50 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 51 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 Total: -1.00 -74.28 402.97 1.18 -73.10 By element: Atomic # 1 Polarization: 27.82 SS G_CDS: 0.35 Total: 28.17 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: 7.76 Total: 7.16 kcal Atomic # 7 Polarization: -108.78 SS G_CDS: -5.52 Total: -114.30 kcal Atomic # 8 Polarization: -34.92 SS G_CDS: -3.43 Total: -38.35 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -74.28 1.18 -73.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772193353.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.719 kcal (2) G-P(sol) polarization free energy of solvation -74.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds