Wall clock time and date at job start Tue Mar 31 2020 20:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46908 * 110.99572 * 2 1 4 4 C 1.53002 * 109.46707 * 293.95240 * 3 2 1 5 5 N 1.46908 * 109.46707 * 179.97438 * 4 3 2 6 6 C 1.47024 * 110.99261 * 46.32476 * 5 4 3 7 7 C 1.53103 * 109.24985 * 182.34870 * 6 5 4 8 8 O 1.43012 * 109.29295 * 303.21723 * 7 6 5 9 9 C 1.43011 * 113.74271 * 58.65008 * 8 7 6 10 10 C 1.47018 * 110.99661 * 170.00016 * 5 4 3 11 11 C 1.46899 * 111.00222 * 123.95052 * 2 1 3 12 12 C 1.50699 * 109.47124 * 66.04848 * 11 2 1 13 13 O 1.21282 * 119.99778 * 359.97438 * 12 11 2 14 14 N 1.34775 * 120.00295 * 179.97438 * 12 11 2 15 15 C 1.46492 * 120.00300 * 180.02562 * 14 12 11 16 16 C 1.50696 * 109.47435 * 89.99811 * 15 14 12 17 17 H 1.08006 * 119.99875 * 0.02562 * 16 15 14 18 18 C 1.37881 * 120.00440 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99553 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00135 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47241 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46794 * 120.00411 * 20 18 16 23 23 H 1.48493 * 109.47207 * 240.00218 * 20 18 16 24 24 C 1.46501 * 119.99766 * 0.02562 * 14 12 11 25 25 C 1.52998 * 109.47495 * 89.99783 * 24 14 12 26 26 C 1.47191 * 109.47571 * 179.97438 * 25 24 14 27 27 N 6.68959 * 104.78011 * 103.63759 * 2 1 3 28 28 H 1.08996 * 109.47534 * 59.99886 * 1 2 3 29 29 H 1.09000 * 109.46885 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46865 * 299.99448 * 1 2 3 31 31 H 1.09002 * 109.46566 * 173.95539 * 3 2 1 32 32 H 1.08999 * 109.47250 * 53.95285 * 3 2 1 33 33 H 1.09003 * 109.46906 * 60.00515 * 4 3 2 34 34 H 1.08999 * 109.47302 * 300.00013 * 4 3 2 35 35 H 1.08998 * 109.47369 * 62.43595 * 6 5 4 36 36 H 1.08998 * 109.54483 * 302.29802 * 6 5 4 37 37 H 1.09002 * 109.50635 * 183.25881 * 7 6 5 38 38 H 1.09003 * 109.50698 * 63.17493 * 7 6 5 39 39 H 1.08997 * 109.50806 * 61.26171 * 9 8 7 40 40 H 1.08997 * 109.50924 * 181.35636 * 9 8 7 41 41 H 1.08994 * 109.50209 * 57.67478 * 10 5 4 42 42 H 1.08997 * 109.50514 * 297.54292 * 10 5 4 43 43 H 1.08999 * 109.46918 * 186.05037 * 11 2 1 44 44 H 1.09004 * 109.47045 * 306.04541 * 11 2 1 45 45 H 1.08996 * 109.47380 * 210.00352 * 15 14 12 46 46 H 1.09003 * 109.47054 * 329.99708 * 15 14 12 47 47 H 0.97003 * 119.99853 * 179.97438 * 19 18 16 48 48 H 1.09005 * 109.47357 * 210.00031 * 24 14 12 49 49 H 1.09002 * 109.47265 * 329.99633 * 24 14 12 50 50 H 1.09005 * 109.47020 * 300.00454 * 25 24 14 51 51 H 1.09002 * 109.46987 * 59.99680 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6313 2.0574 -1.3183 5 7 2.1572 3.4292 -1.3181 6 6 3.5521 3.4584 -0.8546 7 6 4.0403 4.9090 -0.8141 8 8 3.8867 5.4955 -2.1094 9 6 2.5401 5.4844 -2.5906 10 6 2.0370 4.0397 -2.6501 11 6 1.9955 -0.7659 1.1376 12 6 1.6371 -2.2203 0.9729 13 8 1.0048 -2.5831 0.0036 14 7 2.0191 -3.1180 1.9028 15 6 1.6711 -4.5320 1.7425 16 6 2.7639 -5.2348 0.9791 17 1 3.6312 -4.6835 0.6469 18 6 2.6571 -6.5820 0.7055 19 7 1.6013 -7.2535 1.1104 20 14 4.0114 -7.4530 -0.2414 21 1 5.0818 -6.4813 -0.5808 22 1 4.5785 -8.5415 0.5946 23 1 3.4508 -8.0287 -1.4901 24 6 2.7823 -2.6798 3.0740 25 6 1.8174 -2.3058 4.2009 26 6 2.5842 -1.8661 5.3778 27 7 3.1756 -1.5251 6.2859 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 3.0797 1.3445 0.1082 32 1 1.5610 1.9274 0.8309 33 1 0.5470 2.0844 -1.4265 34 1 2.0657 1.5015 -2.1492 35 1 4.1749 2.8838 -1.5401 36 1 3.6137 3.0258 0.1440 37 1 5.0914 4.9314 -0.5266 38 1 3.4524 5.4708 -0.0882 39 1 1.9079 6.0624 -1.9165 40 1 2.5061 5.9236 -3.5876 41 1 0.9926 4.0304 -2.9617 42 1 2.6357 3.4749 -3.3646 43 1 3.0798 -0.6609 1.1756 44 1 1.5612 -0.3871 2.0628 45 1 1.5597 -4.9923 2.7241 46 1 0.7330 -4.6153 1.1936 47 1 1.5260 -8.2012 0.9177 48 1 3.4336 -3.4881 3.4066 49 1 3.3864 -1.8118 2.8100 50 1 1.1661 -1.4975 3.8683 51 1 1.2132 -3.1739 4.4649 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074290255.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:59 Heat of formation + Delta-G solvation = -26.648398 kcal Electronic energy + Delta-G solvation = -29728.196735 eV Core-core repulsion = 25663.683145 eV Total energy + Delta-G solvation = -4064.513590 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.01988 -39.48706 -37.50655 -36.83176 -35.68103 -35.08800 -32.90444 -31.62120 -30.87099 -30.30614 -28.57877 -27.07948 -26.65712 -24.38915 -24.21104 -23.96259 -22.41119 -21.17700 -20.37329 -18.54628 -17.63789 -17.14500 -16.67863 -16.47652 -16.38455 -15.87750 -15.64542 -15.50903 -15.38789 -15.08214 -14.79672 -14.69794 -14.40677 -14.20913 -13.71808 -13.69283 -13.37042 -13.05950 -12.85654 -12.61761 -12.48454 -12.43271 -12.36678 -12.11055 -11.84735 -11.73430 -11.64527 -11.58608 -11.30978 -11.24852 -11.02838 -10.97349 -10.84405 -10.75769 -10.63453 -10.19251 -10.00123 -9.68439 -9.01576 -8.70647 -8.48372 -8.26483 -7.83625 -6.09801 -4.14008 2.69186 2.77350 3.20524 3.27715 3.29693 3.36293 3.40307 3.51907 3.62724 4.00100 4.26829 4.42117 4.51148 4.58628 4.65451 4.81147 4.87335 4.91437 4.96407 5.00132 5.03104 5.10793 5.17512 5.24692 5.26393 5.27453 5.34508 5.37657 5.44593 5.45265 5.50407 5.55949 5.59884 5.63030 5.72585 5.79320 5.79957 6.03793 6.26172 6.57399 6.60427 6.78592 6.80686 7.02283 7.08099 7.34565 7.42802 7.53715 7.86835 8.16532 8.25220 8.84556 8.99953 9.51719 10.98375 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.010442 B = 0.002537 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2680.707276 B =11033.071642 C =12419.504947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.523 5.523 3 C 0.053 3.947 4 C 0.058 3.942 5 N -0.537 5.537 6 C 0.010 3.990 7 C 0.063 3.937 8 O -0.387 6.387 9 C 0.064 3.936 10 C 0.018 3.982 11 C 0.035 3.965 12 C 0.509 3.491 13 O -0.514 6.514 14 N -0.599 5.599 15 C 0.246 3.754 16 C -0.526 4.526 17 H 0.058 0.942 18 C 0.062 3.938 19 N -0.894 5.894 20 Si 0.896 3.104 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.283 1.283 24 C 0.118 3.882 25 C -0.050 4.050 26 C 0.217 3.783 27 N -0.445 5.445 28 H 0.065 0.935 29 H 0.093 0.907 30 H 0.019 0.981 31 H 0.075 0.925 32 H 0.042 0.958 33 H 0.080 0.920 34 H 0.048 0.952 35 H 0.046 0.954 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.045 0.955 43 H 0.097 0.903 44 H 0.057 0.943 45 H 0.034 0.966 46 H 0.046 0.954 47 H 0.263 0.737 48 H 0.095 0.905 49 H 0.073 0.927 50 H 0.104 0.896 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.455 22.525 -1.232 22.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.247 5.247 3 C -0.075 4.075 4 C -0.069 4.069 5 N -0.263 5.263 6 C -0.119 4.119 7 C -0.014 4.014 8 O -0.306 6.306 9 C -0.013 4.013 10 C -0.111 4.111 11 C -0.096 4.096 12 C 0.295 3.705 13 O -0.389 6.389 14 N -0.332 5.332 15 C 0.127 3.873 16 C -0.565 4.565 17 H 0.077 0.923 18 C -0.140 4.140 19 N -0.533 5.533 20 Si 0.724 3.276 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.209 1.209 24 C -0.009 4.009 25 C -0.092 4.092 26 C -0.101 4.101 27 N -0.122 5.122 28 H 0.084 0.916 29 H 0.111 0.889 30 H 0.037 0.963 31 H 0.093 0.907 32 H 0.060 0.940 33 H 0.099 0.901 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.109 0.891 37 H 0.115 0.885 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.115 0.885 41 H 0.105 0.895 42 H 0.063 0.937 43 H 0.115 0.885 44 H 0.075 0.925 45 H 0.052 0.948 46 H 0.064 0.936 47 H 0.073 0.927 48 H 0.113 0.887 49 H 0.092 0.908 50 H 0.122 0.878 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.020 22.752 -0.629 22.760 hybrid contribution 0.497 -1.027 -0.448 1.225 sum 0.516 21.725 -1.077 21.757 Atomic orbital electron populations 1.22609 0.86394 1.04293 0.99671 1.61537 1.09009 1.11852 1.42301 1.22232 1.00149 0.88305 0.96785 1.22118 1.00734 0.86535 0.97535 1.62295 1.19010 1.19695 1.25325 1.22913 0.89085 0.97944 1.01913 1.22688 1.01574 0.92015 0.85085 1.87985 1.27510 1.80938 1.34143 1.22659 0.83408 0.95120 1.00093 1.22782 1.02172 0.96150 0.89949 1.22110 1.01488 0.93358 0.92651 1.20145 0.80461 0.86764 0.83174 1.90662 1.39104 1.80072 1.29018 1.48227 1.54234 1.10542 1.20182 1.19333 0.97432 0.73043 0.97478 1.21452 1.05422 0.93797 1.35851 0.92334 1.24916 0.95937 0.97394 0.95774 1.69927 1.28027 1.08938 1.46421 0.86465 0.81880 0.79459 0.79764 1.19786 1.21026 1.20892 1.21290 0.92937 1.01458 0.85175 1.19906 0.97657 1.03698 0.87935 1.29107 0.93743 0.92962 0.94321 1.81213 1.09651 1.09811 1.11562 0.91592 0.88862 0.96282 0.90669 0.93998 0.90142 0.93371 0.93584 0.89056 0.88451 0.92306 0.92294 0.88473 0.89522 0.93678 0.88472 0.92506 0.94779 0.93591 0.92745 0.88706 0.90826 0.87775 0.86442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 8.96 60.07 0.54 0.77 16 2 N -0.52 -6.84 4.50 -244.36 -1.10 -7.94 16 3 C 0.05 0.54 4.22 -3.82 -0.02 0.53 16 4 C 0.06 0.58 5.20 -3.82 -0.02 0.56 16 5 N -0.54 -4.89 4.88 -234.29 -1.14 -6.03 16 6 C 0.01 0.08 4.94 -3.70 -0.02 0.06 16 7 C 0.06 0.50 7.01 37.21 0.26 0.76 16 8 O -0.39 -3.75 10.83 -35.23 -0.38 -4.13 16 9 C 0.06 0.49 7.01 37.21 0.26 0.75 16 10 C 0.02 0.14 5.63 -3.71 -0.02 0.12 16 11 C 0.04 0.45 4.00 -4.98 -0.02 0.43 16 12 C 0.51 9.08 7.37 -10.99 -0.08 9.00 16 13 O -0.51 -11.55 13.91 5.56 0.08 -11.48 16 14 N -0.60 -10.61 2.46 -175.07 -0.43 -11.04 16 15 C 0.25 5.71 5.16 -5.20 -0.03 5.68 16 16 C -0.53 -13.93 9.39 -34.44 -0.32 -14.25 16 17 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -25.37 13.29 55.43 0.74 -24.63 16 20 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 21 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 24 C 0.12 1.51 5.17 -4.04 -0.02 1.48 16 25 C -0.05 -0.50 6.03 -29.52 -0.18 -0.68 16 26 C 0.22 2.52 15.43 -20.76 -0.32 2.20 16 27 N -0.45 -6.37 18.54 42.15 0.78 -5.59 16 28 H 0.07 0.75 6.47 -51.93 -0.34 0.42 16 29 H 0.09 1.46 5.82 -51.93 -0.30 1.16 16 30 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.07 0.72 6.07 -51.93 -0.32 0.41 16 32 H 0.04 0.41 8.12 -51.93 -0.42 -0.02 16 33 H 0.08 0.79 6.55 -51.93 -0.34 0.45 16 34 H 0.05 0.55 8.08 -51.93 -0.42 0.13 16 35 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.09 0.69 6.05 -51.93 -0.31 0.37 16 37 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.10 1.11 7.19 -51.93 -0.37 0.74 16 44 H 0.06 0.58 7.17 -51.93 -0.37 0.21 16 45 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 46 H 0.05 1.22 7.42 -51.93 -0.39 0.84 16 47 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 48 H 0.09 1.31 8.07 -51.93 -0.42 0.89 16 49 H 0.07 0.77 6.44 -51.93 -0.33 0.44 16 50 H 0.10 0.84 7.22 -51.93 -0.38 0.46 16 51 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 408.37 15.07 6.15 6.15 Total: -1.00 -33.32 408.37 -8.89 -42.20 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -8.48 Total: -2.72 kcal Atomic # 6 Polarization: 9.09 SS G_CDS: -0.08 Total: 9.01 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: -1.15 Total: -55.23 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -0.30 Total: -15.61 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.32 -8.89 -42.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074290255.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.555 kcal (2) G-P(sol) polarization free energy of solvation -33.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds