Wall clock time and date at job start Tue Mar 31 2020 20:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46908 * 110.99572 * 2 1 4 4 C 1.53002 * 109.46707 * 293.95240 * 3 2 1 5 5 N 1.46908 * 109.46707 * 179.97438 * 4 3 2 6 6 C 1.47024 * 110.99261 * 46.32476 * 5 4 3 7 7 C 1.53103 * 109.24985 * 182.34870 * 6 5 4 8 8 O 1.43012 * 109.29295 * 303.21723 * 7 6 5 9 9 C 1.43011 * 113.74271 * 58.65008 * 8 7 6 10 10 C 1.47018 * 110.99661 * 170.00016 * 5 4 3 11 11 C 1.46899 * 111.00222 * 123.95052 * 2 1 3 12 12 C 1.50699 * 109.47124 * 66.04848 * 11 2 1 13 13 O 1.21282 * 119.99778 * 359.97438 * 12 11 2 14 14 N 1.34775 * 120.00295 * 179.97438 * 12 11 2 15 15 C 1.46492 * 120.00300 * 180.02562 * 14 12 11 16 16 C 1.50696 * 109.47435 * 89.99811 * 15 14 12 17 17 H 1.08006 * 119.99875 * 0.02562 * 16 15 14 18 18 C 1.37881 * 120.00440 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99553 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00135 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47241 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46794 * 120.00411 * 20 18 16 23 23 H 1.48493 * 109.47207 * 240.00218 * 20 18 16 24 24 C 1.46501 * 119.99766 * 0.02562 * 14 12 11 25 25 C 1.52998 * 109.47495 * 89.99783 * 24 14 12 26 26 C 1.47191 * 109.47571 * 179.97438 * 25 24 14 27 27 N 6.68959 * 104.78011 * 103.63759 * 2 1 3 28 28 H 1.08996 * 109.47534 * 59.99886 * 1 2 3 29 29 H 1.09000 * 109.46885 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46865 * 299.99448 * 1 2 3 31 31 H 1.09002 * 109.46566 * 173.95539 * 3 2 1 32 32 H 1.08999 * 109.47250 * 53.95285 * 3 2 1 33 33 H 1.09003 * 109.46906 * 60.00515 * 4 3 2 34 34 H 1.08999 * 109.47302 * 300.00013 * 4 3 2 35 35 H 1.08998 * 109.47369 * 62.43595 * 6 5 4 36 36 H 1.08998 * 109.54483 * 302.29802 * 6 5 4 37 37 H 1.09002 * 109.50635 * 183.25881 * 7 6 5 38 38 H 1.09003 * 109.50698 * 63.17493 * 7 6 5 39 39 H 1.08997 * 109.50806 * 61.26171 * 9 8 7 40 40 H 1.08997 * 109.50924 * 181.35636 * 9 8 7 41 41 H 1.08994 * 109.50209 * 57.67478 * 10 5 4 42 42 H 1.08997 * 109.50514 * 297.54292 * 10 5 4 43 43 H 1.08999 * 109.46918 * 186.05037 * 11 2 1 44 44 H 1.09004 * 109.47045 * 306.04541 * 11 2 1 45 45 H 1.08996 * 109.47380 * 210.00352 * 15 14 12 46 46 H 1.09003 * 109.47054 * 329.99708 * 15 14 12 47 47 H 0.97003 * 119.99853 * 179.97438 * 19 18 16 48 48 H 1.09005 * 109.47357 * 210.00031 * 24 14 12 49 49 H 1.09002 * 109.47265 * 329.99633 * 24 14 12 50 50 H 1.09005 * 109.47020 * 300.00454 * 25 24 14 51 51 H 1.09002 * 109.46987 * 59.99680 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6313 2.0574 -1.3183 5 7 2.1572 3.4292 -1.3181 6 6 3.5521 3.4584 -0.8546 7 6 4.0403 4.9090 -0.8141 8 8 3.8867 5.4955 -2.1094 9 6 2.5401 5.4844 -2.5906 10 6 2.0370 4.0397 -2.6501 11 6 1.9955 -0.7659 1.1376 12 6 1.6371 -2.2203 0.9729 13 8 1.0048 -2.5831 0.0036 14 7 2.0191 -3.1180 1.9028 15 6 1.6711 -4.5320 1.7425 16 6 2.7639 -5.2348 0.9791 17 1 3.6312 -4.6835 0.6469 18 6 2.6571 -6.5820 0.7055 19 7 1.6013 -7.2535 1.1104 20 14 4.0114 -7.4530 -0.2414 21 1 5.0818 -6.4813 -0.5808 22 1 4.5785 -8.5415 0.5946 23 1 3.4508 -8.0287 -1.4901 24 6 2.7823 -2.6798 3.0740 25 6 1.8174 -2.3058 4.2009 26 6 2.5842 -1.8661 5.3778 27 7 3.1756 -1.5251 6.2859 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 3.0797 1.3445 0.1082 32 1 1.5610 1.9274 0.8309 33 1 0.5470 2.0844 -1.4265 34 1 2.0657 1.5015 -2.1492 35 1 4.1749 2.8838 -1.5401 36 1 3.6137 3.0258 0.1440 37 1 5.0914 4.9314 -0.5266 38 1 3.4524 5.4708 -0.0882 39 1 1.9079 6.0624 -1.9165 40 1 2.5061 5.9236 -3.5876 41 1 0.9926 4.0304 -2.9617 42 1 2.6357 3.4749 -3.3646 43 1 3.0798 -0.6609 1.1756 44 1 1.5612 -0.3871 2.0628 45 1 1.5597 -4.9923 2.7241 46 1 0.7330 -4.6153 1.1936 47 1 1.5260 -8.2012 0.9177 48 1 3.4336 -3.4881 3.4066 49 1 3.3864 -1.8118 2.8100 50 1 1.1661 -1.4975 3.8683 51 1 1.2132 -3.1739 4.4649 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074290255.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:58 Heat of formation + Delta-G solvation = -51.405925 kcal Electronic energy + Delta-G solvation = -29729.270302 eV Core-core repulsion = 25663.683145 eV Total energy + Delta-G solvation = -4065.587157 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.96874 -40.51881 -38.45327 -37.88009 -36.71152 -36.24509 -34.83707 -32.25303 -32.13558 -31.19654 -29.84395 -28.34708 -27.65660 -25.39106 -25.23435 -25.01709 -23.81151 -21.98336 -21.09394 -19.88230 -18.78957 -18.31654 -18.04840 -17.65618 -17.11465 -17.02651 -16.70750 -16.38314 -16.27378 -16.01865 -15.88005 -15.71614 -15.50170 -15.36491 -14.87723 -14.66535 -14.44957 -14.17019 -13.97562 -13.82667 -13.54613 -13.48988 -13.26580 -13.16762 -13.11452 -12.96263 -12.69843 -12.62497 -12.52002 -12.36879 -12.33089 -12.29795 -12.14745 -11.81431 -11.68703 -11.61054 -11.41606 -10.64696 -10.57888 -10.43214 -9.44662 -9.42394 -9.17053 -8.16799 -6.28373 1.39051 1.42037 1.52147 1.70526 1.85119 1.94856 2.21725 2.43386 2.64852 2.96519 3.10845 3.15627 3.27337 3.79036 3.83942 3.94574 4.02160 4.06385 4.13279 4.15157 4.21734 4.28134 4.34496 4.38825 4.41909 4.52171 4.57691 4.62583 4.67170 4.68323 4.74137 4.83443 4.85714 4.90008 4.91076 4.95373 5.06257 5.07657 5.14223 5.25427 5.36777 5.64425 5.84877 5.88907 5.92507 6.01676 6.15659 6.18985 6.21533 6.61722 6.79640 6.86495 7.37522 7.60849 8.89871 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.010442 B = 0.002537 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2680.707276 B =11033.071642 C =12419.504947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.548 5.548 3 C 0.061 3.939 4 C 0.064 3.936 5 N -0.538 5.538 6 C 0.009 3.991 7 C 0.062 3.938 8 O -0.409 6.409 9 C 0.064 3.936 10 C 0.017 3.983 11 C 0.047 3.953 12 C 0.502 3.498 13 O -0.570 6.570 14 N -0.600 5.600 15 C 0.261 3.739 16 C -0.536 4.536 17 H 0.052 0.948 18 C 0.010 3.990 19 N -0.926 5.926 20 Si 0.956 3.044 21 H -0.269 1.269 22 H -0.274 1.274 23 H -0.286 1.286 24 C 0.114 3.886 25 C -0.037 4.037 26 C 0.246 3.754 27 N -0.489 5.489 28 H 0.071 0.929 29 H 0.057 0.943 30 H 0.040 0.960 31 H 0.084 0.916 32 H 0.057 0.943 33 H 0.080 0.920 34 H 0.027 0.973 35 H 0.032 0.968 36 H 0.104 0.896 37 H 0.111 0.889 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.112 0.888 41 H 0.097 0.903 42 H 0.032 0.968 43 H 0.119 0.881 44 H 0.095 0.905 45 H 0.034 0.966 46 H 0.003 0.997 47 H 0.265 0.735 48 H 0.082 0.918 49 H 0.106 0.894 50 H 0.135 0.865 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.492 24.692 -0.408 24.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.273 5.273 3 C -0.066 4.066 4 C -0.064 4.064 5 N -0.264 5.264 6 C -0.119 4.119 7 C -0.015 4.015 8 O -0.328 6.328 9 C -0.013 4.013 10 C -0.112 4.112 11 C -0.084 4.084 12 C 0.290 3.710 13 O -0.449 6.449 14 N -0.332 5.332 15 C 0.140 3.860 16 C -0.574 4.574 17 H 0.070 0.930 18 C -0.189 4.189 19 N -0.566 5.566 20 Si 0.782 3.218 21 H -0.193 1.193 22 H -0.199 1.199 23 H -0.212 1.212 24 C -0.011 4.011 25 C -0.078 4.078 26 C -0.071 4.071 27 N -0.167 5.167 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.059 0.941 31 H 0.102 0.898 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.045 0.955 35 H 0.050 0.950 36 H 0.122 0.878 37 H 0.129 0.871 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.130 0.870 41 H 0.115 0.885 42 H 0.050 0.950 43 H 0.136 0.864 44 H 0.112 0.888 45 H 0.052 0.948 46 H 0.021 0.979 47 H 0.074 0.926 48 H 0.101 0.899 49 H 0.124 0.876 50 H 0.153 0.847 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.995 24.958 0.233 24.979 hybrid contribution 0.172 -1.678 -0.742 1.843 sum 1.167 23.280 -0.509 23.314 Atomic orbital electron populations 1.22467 0.86511 1.02317 1.01037 1.61444 1.09217 1.13634 1.43051 1.22201 1.00558 0.86700 0.97136 1.22023 1.00618 0.86849 0.96905 1.62345 1.19414 1.18866 1.25726 1.22964 0.88430 0.98348 1.02138 1.22806 1.02595 0.91478 0.84596 1.87958 1.28642 1.81164 1.35023 1.22774 0.82706 0.94702 1.01097 1.22837 1.02648 0.96372 0.89313 1.22068 1.02869 0.89272 0.94201 1.21125 0.79085 0.88823 0.81942 1.90645 1.41520 1.81383 1.31334 1.48096 1.54661 1.08458 1.21982 1.18762 0.94664 0.76382 0.96170 1.21782 1.05784 0.94150 1.35734 0.92984 1.25707 0.97999 0.98380 0.96776 1.70027 1.29673 1.09230 1.47719 0.85536 0.79385 0.78554 0.78352 1.19287 1.19892 1.21205 1.21508 0.93162 1.02267 0.84159 1.19827 0.96919 1.04876 0.86219 1.29137 0.92634 0.91586 0.93778 1.81259 1.10934 1.11560 1.12932 0.91002 0.92411 0.94123 0.89816 0.92485 0.90139 0.95468 0.94982 0.87782 0.87113 0.91661 0.91670 0.86988 0.88483 0.94965 0.86355 0.88758 0.94843 0.97869 0.92645 0.89904 0.87573 0.84725 0.86273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.59 8.96 127.69 1.14 1.73 16 2 N -0.55 -13.25 4.50 -927.02 -4.17 -17.42 16 3 C 0.06 1.07 4.22 86.30 0.36 1.44 16 4 C 0.06 1.17 5.20 86.30 0.45 1.62 16 5 N -0.54 -8.80 4.88 -895.15 -4.36 -13.17 16 6 C 0.01 0.14 4.94 86.31 0.43 0.56 16 7 C 0.06 0.85 7.01 72.02 0.50 1.35 16 8 O -0.41 -7.30 10.83 -148.98 -1.61 -8.91 16 9 C 0.06 0.86 7.01 72.02 0.50 1.37 16 10 C 0.02 0.25 5.63 86.31 0.49 0.73 16 11 C 0.05 1.05 4.00 85.56 0.34 1.39 16 12 C 0.50 17.57 7.37 87.66 0.65 18.21 16 13 O -0.57 -26.43 13.91 -3.04 -0.04 -26.47 16 14 N -0.60 -20.85 2.46 -826.18 -2.03 -22.88 16 15 C 0.26 12.44 5.16 85.63 0.44 12.88 16 16 C -0.54 -28.80 9.39 25.60 0.24 -28.56 16 17 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 18 C 0.01 0.57 5.46 84.66 0.46 1.03 16 19 N -0.93 -53.65 13.29 21.45 0.28 -53.37 16 20 Si 0.96 43.80 29.54 68.60 2.03 45.83 16 21 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 23 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 24 C 0.11 2.63 5.17 86.38 0.45 3.07 16 25 C -0.04 -0.63 6.03 28.79 0.17 -0.46 16 26 C 0.25 5.05 15.43 89.44 1.38 6.43 16 27 N -0.49 -13.00 18.54 20.00 0.37 -12.63 16 28 H 0.07 1.59 6.47 -2.39 -0.02 1.57 16 29 H 0.06 1.83 5.82 -2.39 -0.01 1.82 16 30 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.08 1.33 6.07 -2.39 -0.01 1.31 16 32 H 0.06 0.86 8.12 -2.39 -0.02 0.84 16 33 H 0.08 1.46 6.55 -2.39 -0.02 1.45 16 34 H 0.03 0.61 8.08 -2.39 -0.02 0.59 16 35 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.10 1.25 6.05 -2.39 -0.01 1.24 16 37 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.11 1.12 8.14 -2.39 -0.02 1.11 16 41 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.12 2.21 7.19 -2.39 -0.02 2.19 16 44 H 0.09 1.45 7.17 -2.38 -0.02 1.43 16 45 H 0.03 1.58 8.07 -2.39 -0.02 1.56 16 46 H 0.00 0.18 7.42 -2.39 -0.02 0.16 16 47 H 0.26 14.51 8.31 -92.71 -0.77 13.73 16 48 H 0.08 2.15 8.07 -2.38 -0.02 2.13 16 49 H 0.11 1.80 6.44 -2.39 -0.02 1.78 16 50 H 0.14 1.55 7.22 -2.38 -0.02 1.53 16 51 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -75.50 408.37 -0.61 -76.11 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: 0.92 Total: 10.09 kcal Atomic # 6 Polarization: 14.81 SS G_CDS: 8.01 Total: 22.82 kcal Atomic # 7 Polarization: -109.56 SS G_CDS: -9.91 Total: -119.47 kcal Atomic # 8 Polarization: -33.73 SS G_CDS: -1.66 Total: -35.38 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -75.50 -0.61 -76.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074290255.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.700 kcal (2) G-P(sol) polarization free energy of solvation -75.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds