Wall clock time and date at job start Tue Mar 31 2020 21:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46897 * 111.00107 * 2 1 4 4 C 1.53001 * 109.47046 * 66.05066 * 3 2 1 5 5 C 1.52994 * 109.47447 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47574 * 180.02562 * 5 4 3 7 7 H 1.08001 * 119.99157 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00495 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99630 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00095 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47362 * 90.00043 * 10 8 6 12 12 H 1.48501 * 109.47388 * 209.99828 * 10 8 6 13 13 H 1.48500 * 109.47543 * 329.99819 * 10 8 6 14 14 C 1.46905 * 110.99510 * 236.04931 * 2 1 3 15 15 C 1.52990 * 109.47289 * 293.95039 * 14 2 1 16 16 H 1.09002 * 109.90674 * 66.11055 * 15 14 2 17 17 C 1.53997 * 110.08145 * 187.31365 * 15 14 2 18 18 C 1.54597 * 105.13909 * 120.67379 * 17 15 14 19 19 H 1.08995 * 110.72423 * 263.59817 * 18 17 15 20 20 F 1.39904 * 110.72361 * 140.49441 * 18 17 15 21 21 C 1.54936 * 102.92198 * 21.95696 * 18 17 15 22 22 N 1.47895 * 109.92112 * 305.00424 * 15 14 2 23 23 C 1.46900 * 111.00068 * 94.60380 * 22 15 14 24 24 C 1.50709 * 109.47147 * 170.00343 * 23 22 15 25 25 C 1.35311 * 126.12584 * 95.02056 * 24 23 22 26 26 C 1.39876 * 107.91749 * 179.97438 * 25 24 23 27 27 N 1.30834 * 108.20073 * 0.27043 * 26 25 24 28 28 N 1.34947 * 126.12387 * 274.98485 * 24 23 22 29 29 C 1.46500 * 126.04040 * 0.03254 * 28 24 23 30 30 H 1.09000 * 109.47348 * 183.95151 * 1 2 3 31 31 H 1.09000 * 109.46882 * 303.95114 * 1 2 3 32 32 H 1.08998 * 109.47325 * 63.94773 * 1 2 3 33 33 H 1.09000 * 109.47156 * 186.04389 * 3 2 1 34 34 H 1.08995 * 109.47460 * 306.04816 * 3 2 1 35 35 H 1.08997 * 109.47053 * 299.99861 * 4 3 2 36 36 H 1.08995 * 109.47196 * 59.99588 * 4 3 2 37 37 H 1.09006 * 109.46845 * 300.00160 * 5 4 3 38 38 H 1.08995 * 109.47224 * 59.99648 * 5 4 3 39 39 H 0.96999 * 119.99495 * 180.02562 * 9 8 6 40 40 H 1.09009 * 109.46707 * 173.95093 * 14 2 1 41 41 H 1.08998 * 109.47175 * 53.95965 * 14 2 1 42 42 H 1.09002 * 110.30836 * 239.58718 * 17 15 14 43 43 H 1.08994 * 110.30943 * 1.75298 * 17 15 14 44 44 H 1.09001 * 110.66671 * 204.15095 * 21 18 17 45 45 H 1.08999 * 110.67089 * 81.02191 * 21 18 17 46 46 H 1.08995 * 109.47323 * 50.00605 * 23 22 15 47 47 H 1.08994 * 109.47031 * 289.99847 * 23 22 15 48 48 H 1.07992 * 126.04231 * 359.94661 * 25 24 23 49 49 H 1.08002 * 125.89548 * 179.97438 * 26 25 24 50 50 H 1.08995 * 109.47266 * 90.00219 * 29 28 24 51 51 H 1.08996 * 109.47009 * 210.00717 * 29 28 24 52 52 H 1.09011 * 109.46832 * 330.00309 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0574 1.3183 5 6 2.1804 3.4855 1.3187 6 6 1.8225 4.1609 2.6174 7 1 1.2595 3.6252 3.3674 8 6 2.2129 5.4630 2.8478 9 7 2.8981 6.1155 1.9343 10 14 1.7686 6.3004 4.4574 11 1 2.8454 6.0637 5.4523 12 1 1.6166 7.7601 4.2305 13 1 0.4907 5.7433 4.9691 14 6 1.9953 -0.7660 -1.1377 15 6 1.6314 -2.2425 -0.9705 16 1 0.5509 -2.3686 -1.0400 17 6 2.3286 -3.0850 -2.0548 18 6 3.2029 -4.0972 -1.2796 19 1 4.2287 -3.7379 -1.1982 20 9 3.1678 -5.3539 -1.8936 21 6 2.5262 -4.1441 0.1133 22 7 2.1131 -2.7352 0.3381 23 6 1.0549 -2.6525 1.3537 24 6 1.4942 -3.3816 2.5974 25 6 2.0837 -2.8264 3.6814 26 6 2.3276 -3.8456 4.6079 27 7 1.9052 -4.9730 4.0959 28 7 1.3694 -4.7051 2.8296 29 6 0.7829 -5.6889 1.9161 30 1 -0.3634 -1.0252 0.0708 31 1 -0.3633 0.5739 0.8525 32 1 -0.3634 0.4513 -0.9232 33 1 3.0797 1.3443 -0.1082 34 1 1.5611 1.9274 -0.8308 35 1 0.5473 2.0844 1.4266 36 1 2.0659 1.5014 2.1492 37 1 3.2647 3.4580 1.2106 38 1 1.7464 4.0417 0.4878 39 1 3.1730 7.0314 2.0965 40 1 3.0797 -0.6610 -1.1758 41 1 1.5610 -0.3871 -2.0629 42 1 1.5891 -3.6095 -2.6601 43 1 2.9523 -2.4503 -2.6842 44 1 3.2369 -4.4630 0.8758 45 1 1.6571 -4.8018 0.0970 46 1 0.1440 -3.1094 0.9674 47 1 0.8632 -1.6069 1.5943 48 1 2.3238 -1.7813 3.8086 49 1 2.7897 -3.7236 5.5764 50 1 1.5614 -6.0938 1.2696 51 1 0.3329 -6.4970 2.4928 52 1 0.0180 -5.2079 1.3064 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348119757.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:06 Heat of formation + Delta-G solvation = 44.447014 kcal Electronic energy + Delta-G solvation = -30617.319558 eV Core-core repulsion = 26568.261686 eV Total energy + Delta-G solvation = -4049.057872 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.218 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -47.95787 -41.44019 -39.51579 -37.03950 -33.90323 -33.53962 -32.84621 -31.57452 -29.88412 -29.62400 -27.30515 -27.02370 -26.44296 -25.23811 -23.79155 -22.10672 -21.45549 -21.11626 -20.25346 -19.82325 -19.60246 -17.47558 -16.80766 -16.55719 -16.27821 -15.81608 -15.45229 -15.25386 -15.06082 -14.71574 -14.67336 -14.41161 -14.07057 -13.97750 -13.79445 -13.49286 -13.28644 -13.17529 -12.88894 -12.79872 -12.56307 -12.37147 -12.21212 -11.92555 -11.76414 -11.56592 -11.36532 -11.28714 -11.16515 -11.00454 -10.81532 -10.78072 -10.63270 -10.50574 -10.45362 -9.57776 -9.44089 -9.30147 -9.03466 -8.68077 -8.51876 -8.31193 -8.04014 -5.96826 -3.98535 1.73011 2.37888 2.80912 3.34508 3.40632 3.43922 3.56787 3.87577 4.02263 4.18714 4.32413 4.34283 4.47657 4.50209 4.58233 4.68313 4.77298 4.84253 4.97897 5.03107 5.11236 5.17992 5.24316 5.33857 5.36907 5.39322 5.42932 5.50251 5.54982 5.60699 5.64235 5.71410 5.81881 5.84340 5.89963 6.01327 6.07939 6.20244 6.35474 6.54845 6.63498 6.65146 6.73580 6.79716 6.93111 7.15308 7.35694 7.38769 7.64033 7.72161 7.87463 8.04102 8.47469 9.08891 9.65422 11.14671 Molecular weight = 338.22amu Principal moments of inertia in cm(-1) A = 0.011570 B = 0.002836 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.512909 B = 9869.294508 C =11644.652276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.530 5.530 3 C 0.058 3.942 4 C -0.103 4.103 5 C 0.022 3.978 6 C -0.517 4.517 7 H 0.055 0.945 8 C 0.056 3.944 9 N -0.897 5.897 10 Si 0.891 3.109 11 H -0.280 1.280 12 H -0.287 1.287 13 H -0.274 1.274 14 C 0.069 3.931 15 C 0.073 3.927 16 H 0.058 0.942 17 C -0.151 4.151 18 C 0.086 3.914 19 H 0.103 0.897 20 F -0.210 7.210 21 C -0.001 4.001 22 N -0.477 5.477 23 C 0.113 3.887 24 C 0.085 3.915 25 C -0.243 4.243 26 C 0.045 3.955 27 N -0.301 5.301 28 N -0.377 5.377 29 C 0.096 3.904 30 H 0.056 0.944 31 H 0.077 0.923 32 H 0.021 0.979 33 H 0.070 0.930 34 H 0.026 0.974 35 H 0.045 0.955 36 H 0.057 0.943 37 H 0.015 0.985 38 H 0.012 0.988 39 H 0.259 0.741 40 H 0.082 0.918 41 H 0.035 0.965 42 H 0.082 0.918 43 H 0.089 0.911 44 H 0.091 0.909 45 H 0.058 0.942 46 H 0.037 0.963 47 H 0.132 0.868 48 H 0.154 0.846 49 H 0.183 0.817 50 H 0.077 0.923 51 H 0.088 0.912 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.762 -24.083 -7.057 25.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.254 5.254 3 C -0.069 4.069 4 C -0.141 4.141 5 C -0.016 4.016 6 C -0.555 4.555 7 H 0.073 0.927 8 C -0.145 4.145 9 N -0.537 5.537 10 Si 0.719 3.281 11 H -0.206 1.206 12 H -0.213 1.213 13 H -0.199 1.199 14 C -0.059 4.059 15 C -0.036 4.036 16 H 0.075 0.925 17 C -0.190 4.190 18 C 0.049 3.951 19 H 0.120 0.880 20 F -0.190 7.190 21 C -0.129 4.129 22 N -0.201 5.201 23 C -0.016 4.016 24 C -0.042 4.042 25 C -0.273 4.273 26 C -0.140 4.140 27 N -0.123 5.123 28 N -0.161 5.161 29 C -0.046 4.046 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.040 0.960 33 H 0.088 0.912 34 H 0.044 0.956 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.034 0.966 38 H 0.030 0.970 39 H 0.069 0.931 40 H 0.100 0.900 41 H 0.053 0.947 42 H 0.101 0.899 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.076 0.924 46 H 0.055 0.945 47 H 0.150 0.850 48 H 0.171 0.829 49 H 0.200 0.800 50 H 0.095 0.905 51 H 0.106 0.894 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.306 -25.200 -6.401 26.209 hybrid contribution -1.080 1.260 -0.320 1.690 sum -4.386 -23.940 -6.722 25.249 Atomic orbital electron populations 1.22569 0.88684 1.00922 1.01276 1.62048 1.06732 1.15067 1.41506 1.22284 0.99617 0.85943 0.99010 1.21633 0.99837 0.98129 0.94514 1.19063 0.96228 0.89411 0.96851 1.21253 1.34635 0.97553 1.02057 0.92690 1.25023 0.95291 0.97540 0.96663 1.69968 1.38465 1.11303 1.33934 0.86617 0.78870 0.78599 0.84055 1.20639 1.21337 1.19897 1.22150 1.01048 0.90992 0.91747 1.22440 0.97704 0.95497 0.87977 0.92453 1.23043 0.99818 0.97911 0.98189 1.22452 1.01757 0.79228 0.91691 0.87953 1.92809 1.98012 1.43789 1.84430 1.24149 1.00256 0.91770 0.96731 1.64699 1.35545 1.14598 1.05302 1.21137 0.90882 1.02492 0.87058 1.20936 1.01209 0.84199 0.97857 1.21386 1.10063 1.01477 0.94335 1.23877 0.99701 0.90144 1.00327 1.77328 1.18172 1.23587 0.93196 1.48441 1.47858 1.05722 1.14070 1.21980 0.98367 0.91994 0.92273 0.92534 0.90397 0.96007 0.91170 0.95579 0.93620 0.92461 0.96647 0.96998 0.93089 0.89978 0.94697 0.89936 0.89216 0.89119 0.92375 0.94488 0.84983 0.82863 0.80023 0.90475 0.89381 0.90045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 7.94 60.06 0.48 0.64 16 2 N -0.53 -6.85 3.41 -242.92 -0.83 -7.68 16 3 C 0.06 0.95 4.96 -3.82 -0.02 0.93 16 4 C -0.10 -2.05 5.08 -26.73 -0.14 -2.18 16 5 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 6 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 7 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -26.97 13.29 55.43 0.74 -26.24 16 10 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 14 C 0.07 0.74 4.46 -3.83 -0.02 0.72 16 15 C 0.07 0.64 2.41 -66.65 -0.16 0.48 16 16 H 0.06 0.48 6.33 -51.93 -0.33 0.16 16 17 C -0.15 -1.13 6.39 -25.37 -0.16 -1.29 16 18 C 0.09 0.72 4.86 -24.87 -0.12 0.60 16 19 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 20 F -0.21 -2.06 17.20 2.25 0.04 -2.02 16 21 C 0.00 -0.01 4.21 -1.90 -0.01 -0.01 16 22 N -0.48 -4.75 4.88 -224.01 -1.09 -5.84 16 23 C 0.11 1.16 3.91 -4.97 -0.02 1.14 16 24 C 0.08 0.98 5.44 -82.26 -0.45 0.53 16 25 C -0.24 -3.03 10.72 -40.01 -0.43 -3.45 16 26 C 0.04 0.53 12.03 -17.36 -0.21 0.33 16 27 N -0.30 -3.90 12.58 30.63 0.39 -3.51 16 28 N -0.38 -4.20 3.79 -63.88 -0.24 -4.44 16 29 C 0.10 0.72 9.29 59.85 0.56 1.27 16 30 H 0.06 0.55 5.20 -51.93 -0.27 0.28 16 31 H 0.08 1.01 6.30 -51.93 -0.33 0.68 16 32 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.07 1.16 7.93 -51.93 -0.41 0.75 16 34 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 35 H 0.05 0.89 6.47 -51.93 -0.34 0.55 16 36 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 39 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.08 0.92 7.93 -51.92 -0.41 0.51 16 41 H 0.03 0.35 8.12 -51.93 -0.42 -0.07 16 42 H 0.08 0.56 8.12 -51.93 -0.42 0.14 16 43 H 0.09 0.61 7.69 -51.93 -0.40 0.21 16 44 H 0.09 0.95 7.84 -51.93 -0.41 0.54 16 45 H 0.06 0.46 4.79 -51.93 -0.25 0.22 16 46 H 0.04 0.33 6.87 -51.93 -0.36 -0.03 16 47 H 0.13 1.55 5.46 -51.93 -0.28 1.27 16 48 H 0.15 1.91 8.06 -52.49 -0.42 1.48 16 49 H 0.18 1.63 8.06 -52.49 -0.42 1.21 16 50 H 0.08 0.52 6.44 -51.93 -0.33 0.19 16 51 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 52 H 0.08 0.48 6.89 -51.92 -0.36 0.12 16 LS Contribution 398.76 15.07 6.01 6.01 Total: -1.00 -32.02 398.76 -9.92 -41.95 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -8.66 Total: -1.61 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: -1.24 Total: -13.26 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: -1.04 Total: -47.71 kcal Atomic # 9 Polarization: -2.06 SS G_CDS: 0.04 Total: -2.02 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.02 -9.92 -41.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348119757.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.393 kcal (2) G-P(sol) polarization free energy of solvation -32.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds