Wall clock time and date at job start Tue Mar 31 2020 21:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46897 * 111.00107 * 2 1 4 4 C 1.53001 * 109.47046 * 66.05066 * 3 2 1 5 5 C 1.52994 * 109.47447 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47574 * 180.02562 * 5 4 3 7 7 H 1.08001 * 119.99157 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00495 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99630 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00095 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47362 * 90.00043 * 10 8 6 12 12 H 1.48501 * 109.47388 * 209.99828 * 10 8 6 13 13 H 1.48500 * 109.47543 * 329.99819 * 10 8 6 14 14 C 1.46905 * 110.99510 * 236.04931 * 2 1 3 15 15 C 1.52990 * 109.47289 * 293.95039 * 14 2 1 16 16 H 1.09002 * 109.90674 * 66.11055 * 15 14 2 17 17 C 1.53997 * 110.08145 * 187.31365 * 15 14 2 18 18 C 1.54597 * 105.13909 * 120.67379 * 17 15 14 19 19 H 1.08995 * 110.72423 * 263.59817 * 18 17 15 20 20 F 1.39904 * 110.72361 * 140.49441 * 18 17 15 21 21 C 1.54936 * 102.92198 * 21.95696 * 18 17 15 22 22 N 1.47895 * 109.92112 * 305.00424 * 15 14 2 23 23 C 1.46900 * 111.00068 * 94.60380 * 22 15 14 24 24 C 1.50709 * 109.47147 * 170.00343 * 23 22 15 25 25 C 1.35311 * 126.12584 * 95.02056 * 24 23 22 26 26 C 1.39876 * 107.91749 * 179.97438 * 25 24 23 27 27 N 1.30834 * 108.20073 * 0.27043 * 26 25 24 28 28 N 1.34947 * 126.12387 * 274.98485 * 24 23 22 29 29 C 1.46500 * 126.04040 * 0.03254 * 28 24 23 30 30 H 1.09000 * 109.47348 * 183.95151 * 1 2 3 31 31 H 1.09000 * 109.46882 * 303.95114 * 1 2 3 32 32 H 1.08998 * 109.47325 * 63.94773 * 1 2 3 33 33 H 1.09000 * 109.47156 * 186.04389 * 3 2 1 34 34 H 1.08995 * 109.47460 * 306.04816 * 3 2 1 35 35 H 1.08997 * 109.47053 * 299.99861 * 4 3 2 36 36 H 1.08995 * 109.47196 * 59.99588 * 4 3 2 37 37 H 1.09006 * 109.46845 * 300.00160 * 5 4 3 38 38 H 1.08995 * 109.47224 * 59.99648 * 5 4 3 39 39 H 0.96999 * 119.99495 * 180.02562 * 9 8 6 40 40 H 1.09009 * 109.46707 * 173.95093 * 14 2 1 41 41 H 1.08998 * 109.47175 * 53.95965 * 14 2 1 42 42 H 1.09002 * 110.30836 * 239.58718 * 17 15 14 43 43 H 1.08994 * 110.30943 * 1.75298 * 17 15 14 44 44 H 1.09001 * 110.66671 * 204.15095 * 21 18 17 45 45 H 1.08999 * 110.67089 * 81.02191 * 21 18 17 46 46 H 1.08995 * 109.47323 * 50.00605 * 23 22 15 47 47 H 1.08994 * 109.47031 * 289.99847 * 23 22 15 48 48 H 1.07992 * 126.04231 * 359.94661 * 25 24 23 49 49 H 1.08002 * 125.89548 * 179.97438 * 26 25 24 50 50 H 1.08995 * 109.47266 * 90.00219 * 29 28 24 51 51 H 1.08996 * 109.47009 * 210.00717 * 29 28 24 52 52 H 1.09011 * 109.46832 * 330.00309 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0574 1.3183 5 6 2.1804 3.4855 1.3187 6 6 1.8225 4.1609 2.6174 7 1 1.2595 3.6252 3.3674 8 6 2.2129 5.4630 2.8478 9 7 2.8981 6.1155 1.9343 10 14 1.7686 6.3004 4.4574 11 1 2.8454 6.0637 5.4523 12 1 1.6166 7.7601 4.2305 13 1 0.4907 5.7433 4.9691 14 6 1.9953 -0.7660 -1.1377 15 6 1.6314 -2.2425 -0.9705 16 1 0.5509 -2.3686 -1.0400 17 6 2.3286 -3.0850 -2.0548 18 6 3.2029 -4.0972 -1.2796 19 1 4.2287 -3.7379 -1.1982 20 9 3.1678 -5.3539 -1.8936 21 6 2.5262 -4.1441 0.1133 22 7 2.1131 -2.7352 0.3381 23 6 1.0549 -2.6525 1.3537 24 6 1.4942 -3.3816 2.5974 25 6 2.0837 -2.8264 3.6814 26 6 2.3276 -3.8456 4.6079 27 7 1.9052 -4.9730 4.0959 28 7 1.3694 -4.7051 2.8296 29 6 0.7829 -5.6889 1.9161 30 1 -0.3634 -1.0252 0.0708 31 1 -0.3633 0.5739 0.8525 32 1 -0.3634 0.4513 -0.9232 33 1 3.0797 1.3443 -0.1082 34 1 1.5611 1.9274 -0.8308 35 1 0.5473 2.0844 1.4266 36 1 2.0659 1.5014 2.1492 37 1 3.2647 3.4580 1.2106 38 1 1.7464 4.0417 0.4878 39 1 3.1730 7.0314 2.0965 40 1 3.0797 -0.6610 -1.1758 41 1 1.5610 -0.3871 -2.0629 42 1 1.5891 -3.6095 -2.6601 43 1 2.9523 -2.4503 -2.6842 44 1 3.2369 -4.4630 0.8758 45 1 1.6571 -4.8018 0.0970 46 1 0.1440 -3.1094 0.9674 47 1 0.8632 -1.6069 1.5943 48 1 2.3238 -1.7813 3.8086 49 1 2.7897 -3.7236 5.5764 50 1 1.5614 -6.0938 1.2696 51 1 0.3329 -6.4970 2.4928 52 1 0.0180 -5.2079 1.3064 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348119757.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:05 Heat of formation + Delta-G solvation = 24.390417 kcal Electronic energy + Delta-G solvation = -30618.189278 eV Core-core repulsion = 26568.261686 eV Total energy + Delta-G solvation = -4049.927592 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.218 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -48.66374 -42.28934 -40.32342 -38.14582 -35.60506 -34.55558 -33.59981 -33.30943 -30.82522 -30.51913 -28.61210 -27.93390 -27.48555 -26.19052 -25.19821 -23.21246 -22.52898 -21.97570 -21.38469 -21.02442 -20.40891 -18.43493 -18.21535 -17.54180 -17.33752 -16.69463 -16.65804 -16.27233 -16.07198 -15.96611 -15.62905 -15.47373 -15.10732 -14.94227 -14.62216 -14.48302 -14.31608 -14.15541 -14.00498 -13.64088 -13.53160 -13.51883 -13.29285 -13.14906 -12.93917 -12.73587 -12.60078 -12.46909 -12.40186 -12.35806 -12.05744 -12.01222 -11.70576 -11.52457 -11.48001 -11.32839 -11.28606 -11.00311 -10.51034 -10.28656 -9.48315 -9.36886 -9.06507 -8.16836 -6.27027 0.86048 1.42056 1.43307 1.54163 1.62733 1.90046 2.43505 2.80851 3.02434 3.16577 3.31860 3.41029 3.59436 3.67868 3.78371 3.88019 3.98854 4.04827 4.22802 4.26797 4.31300 4.32544 4.36721 4.40998 4.47797 4.60380 4.62228 4.65316 4.70236 4.78755 4.78875 4.81365 4.82620 4.89388 4.91337 5.03144 5.04772 5.12408 5.15986 5.20015 5.32386 5.34518 5.57974 5.75768 5.81722 5.82613 5.90567 5.91965 6.12948 6.17877 6.31630 6.35303 6.75606 6.90550 7.42064 8.95079 Molecular weight = 338.22amu Principal moments of inertia in cm(-1) A = 0.011570 B = 0.002836 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.512909 B = 9869.294508 C =11644.652276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.532 5.532 3 C 0.072 3.928 4 C -0.086 4.086 5 C 0.026 3.974 6 C -0.539 4.539 7 H 0.059 0.941 8 C -0.001 4.001 9 N -0.935 5.935 10 Si 0.962 3.038 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.263 1.263 14 C 0.069 3.931 15 C 0.079 3.921 16 H 0.071 0.929 17 C -0.143 4.143 18 C 0.086 3.914 19 H 0.103 0.897 20 F -0.216 7.216 21 C 0.006 3.994 22 N -0.493 5.493 23 C 0.119 3.881 24 C 0.087 3.913 25 C -0.270 4.270 26 C 0.040 3.960 27 N -0.328 5.328 28 N -0.375 5.375 29 C 0.086 3.914 30 H 0.081 0.919 31 H 0.062 0.938 32 H 0.025 0.975 33 H 0.063 0.937 34 H 0.022 0.978 35 H 0.050 0.950 36 H 0.051 0.949 37 H -0.011 1.011 38 H -0.012 1.012 39 H 0.263 0.737 40 H 0.074 0.926 41 H 0.046 0.954 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.058 0.942 47 H 0.118 0.882 48 H 0.145 0.855 49 H 0.202 0.798 50 H 0.085 0.915 51 H 0.096 0.904 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.105 -25.509 -7.481 27.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.256 5.256 3 C -0.056 4.056 4 C -0.124 4.124 5 C -0.011 4.011 6 C -0.577 4.577 7 H 0.077 0.923 8 C -0.199 4.199 9 N -0.575 5.575 10 Si 0.787 3.213 11 H -0.198 1.198 12 H -0.208 1.208 13 H -0.187 1.187 14 C -0.059 4.059 15 C -0.029 4.029 16 H 0.089 0.911 17 C -0.181 4.181 18 C 0.049 3.951 19 H 0.121 0.879 20 F -0.197 7.197 21 C -0.122 4.122 22 N -0.217 5.217 23 C -0.010 4.010 24 C -0.041 4.041 25 C -0.300 4.300 26 C -0.145 4.145 27 N -0.151 5.151 28 N -0.159 5.159 29 C -0.054 4.054 30 H 0.100 0.900 31 H 0.080 0.920 32 H 0.043 0.957 33 H 0.081 0.919 34 H 0.040 0.960 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.007 0.993 38 H 0.007 0.993 39 H 0.071 0.929 40 H 0.093 0.907 41 H 0.064 0.936 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.076 0.924 47 H 0.135 0.865 48 H 0.163 0.837 49 H 0.219 0.781 50 H 0.103 0.897 51 H 0.115 0.885 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.659 -26.662 -6.833 27.915 hybrid contribution -0.643 1.674 -0.232 1.808 sum -5.302 -24.988 -7.065 26.503 Atomic orbital electron populations 1.22579 0.87618 1.02301 1.00721 1.61967 1.07674 1.12810 1.43124 1.21952 0.99299 0.87807 0.96525 1.21353 0.99594 0.94918 0.96534 1.18964 0.94537 0.92512 0.95122 1.21706 1.34666 0.98207 1.03097 0.92285 1.25960 0.95070 0.98367 1.00466 1.70099 1.39527 1.11757 1.36132 0.85491 0.79064 0.77388 0.79386 1.19848 1.20833 1.18698 1.22215 1.00626 0.91895 0.91163 1.22389 0.98565 0.94166 0.87817 0.91121 1.23004 0.99949 0.97466 0.97717 1.22468 1.02060 0.79094 0.91491 0.87929 1.92798 1.98047 1.44364 1.84519 1.24047 1.00357 0.91368 0.96475 1.64608 1.35857 1.15443 1.05841 1.21052 0.91714 1.01564 0.86654 1.21130 1.00389 0.84538 0.97994 1.21496 1.11619 1.01441 0.95455 1.24228 0.99427 0.89735 1.01094 1.77270 1.19236 1.24193 0.94369 1.48687 1.47248 1.06111 1.13856 1.22285 0.99061 0.91871 0.92184 0.90008 0.91955 0.95667 0.91874 0.95991 0.93169 0.93042 0.99256 0.99345 0.92873 0.90731 0.93600 0.88549 0.88405 0.90955 0.91008 0.92410 0.86455 0.83687 0.78118 0.89684 0.88534 0.87971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 7.94 127.69 1.01 1.35 16 2 N -0.53 -13.11 3.41 -922.47 -3.15 -16.25 16 3 C 0.07 2.33 4.96 86.30 0.43 2.76 16 4 C -0.09 -3.47 5.08 30.59 0.16 -3.32 16 5 C 0.03 1.38 4.97 29.85 0.15 1.53 16 6 C -0.54 -30.84 9.11 25.60 0.23 -30.61 16 7 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 8 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 9 N -0.93 -57.27 13.29 21.45 0.28 -56.98 16 10 Si 0.96 44.55 29.54 68.60 2.03 46.57 16 11 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 13 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 14 C 0.07 1.33 4.46 86.30 0.38 1.71 16 15 C 0.08 1.17 2.41 45.06 0.11 1.28 16 16 H 0.07 0.90 6.33 -2.39 -0.02 0.89 16 17 C -0.14 -1.70 6.39 31.47 0.20 -1.50 16 18 C 0.09 1.25 4.86 31.80 0.15 1.41 16 19 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 20 F -0.22 -3.77 17.20 44.97 0.77 -2.99 16 21 C 0.01 0.09 4.21 86.65 0.36 0.45 16 22 N -0.49 -8.85 4.88 -862.63 -4.21 -13.06 16 23 C 0.12 2.21 3.91 85.56 0.33 2.54 16 24 C 0.09 1.94 5.44 41.41 0.23 2.17 16 25 C -0.27 -6.78 10.72 21.99 0.24 -6.54 16 26 C 0.04 0.94 12.03 85.24 1.03 1.97 16 27 N -0.33 -8.33 12.58 -57.02 -0.72 -9.05 16 28 N -0.38 -7.90 3.79 -356.02 -1.35 -9.25 16 29 C 0.09 1.10 9.29 127.77 1.19 2.29 16 30 H 0.08 1.34 5.20 -2.39 -0.01 1.33 16 31 H 0.06 1.54 6.30 -2.39 -0.02 1.53 16 32 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.06 2.12 7.93 -2.39 -0.02 2.11 16 34 H 0.02 0.73 8.12 -2.39 -0.02 0.71 16 35 H 0.05 1.97 6.47 -2.39 -0.02 1.95 16 36 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 37 H -0.01 -0.63 8.14 -2.38 -0.02 -0.65 16 38 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 39 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 40 H 0.07 1.56 7.93 -2.38 -0.02 1.54 16 41 H 0.05 0.81 8.12 -2.39 -0.02 0.79 16 42 H 0.10 0.95 8.12 -2.39 -0.02 0.93 16 43 H 0.10 1.05 7.69 -2.39 -0.02 1.03 16 44 H 0.07 1.44 7.84 -2.39 -0.02 1.42 16 45 H 0.07 0.94 4.79 -2.39 -0.01 0.93 16 46 H 0.06 0.82 6.87 -2.39 -0.02 0.81 16 47 H 0.12 2.58 5.46 -2.39 -0.01 2.57 16 48 H 0.15 3.76 8.06 -2.91 -0.02 3.73 16 49 H 0.20 3.59 8.06 -2.91 -0.02 3.56 16 50 H 0.08 0.96 6.44 -2.39 -0.02 0.95 16 51 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 52 H 0.10 0.87 6.89 -2.38 -0.02 0.85 16 Total: -1.00 -69.89 398.76 1.22 -68.67 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: 0.90 Total: 14.46 kcal Atomic # 6 Polarization: -28.77 SS G_CDS: 6.66 Total: -22.11 kcal Atomic # 7 Polarization: -95.46 SS G_CDS: -9.14 Total: -104.60 kcal Atomic # 9 Polarization: -3.77 SS G_CDS: 0.77 Total: -2.99 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -69.89 1.22 -68.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348119757.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.065 kcal (2) G-P(sol) polarization free energy of solvation -69.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds