Wall clock time and date at job start Tue Mar 31 2020 20:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46493 * 120.00066 * 2 1 4 4 C 1.50706 * 109.47128 * 90.00240 * 3 2 1 5 5 H 1.08000 * 119.99302 * 359.97438 * 4 3 2 6 6 C 1.37871 * 120.00436 * 179.72498 * 4 3 2 7 7 N 1.31515 * 119.99684 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 120.00405 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.46683 * 359.97438 * 8 6 4 10 10 H 1.48492 * 109.47426 * 119.99743 * 8 6 4 11 11 H 1.48501 * 109.46833 * 239.99986 * 8 6 4 12 12 C 1.34771 * 119.99478 * 180.02562 * 2 1 3 13 13 O 1.21285 * 119.99971 * 179.97438 * 12 2 1 14 14 C 1.50699 * 120.00631 * 0.02562 * 12 2 1 15 15 C 1.53000 * 109.47430 * 179.97438 * 14 12 2 16 16 N 1.46895 * 109.47086 * 179.97438 * 15 14 12 17 17 C 1.47844 * 111.00396 * 290.84513 * 16 15 14 18 18 C 1.54912 * 104.79768 * 213.63698 * 17 16 15 19 19 C 1.55138 * 101.65163 * 37.06620 * 18 17 16 20 20 H 1.09004 * 110.70286 * 82.72851 * 19 18 17 21 21 N 1.46496 * 110.85314 * 205.89211 * 19 18 17 22 22 C 1.34776 * 120.00142 * 268.68239 * 21 19 18 23 23 O 1.21583 * 120.00083 * 0.02562 * 22 21 19 24 24 N 1.34781 * 119.99963 * 179.97438 * 22 21 19 25 25 C 1.46497 * 119.99935 * 180.02562 * 24 22 21 26 26 C 1.53003 * 117.49685 * 223.62572 * 25 24 22 27 27 C 1.53003 * 60.00038 * 252.50897 * 26 25 24 28 28 C 1.47448 * 111.00138 * 170.00002 * 16 15 14 29 29 H 1.09004 * 109.47155 * 89.99624 * 1 2 3 30 30 H 1.08993 * 109.47381 * 209.99784 * 1 2 3 31 31 H 1.09002 * 109.46817 * 330.00021 * 1 2 3 32 32 H 1.09001 * 109.47786 * 330.00513 * 3 2 1 33 33 H 1.08998 * 109.47558 * 210.00376 * 3 2 1 34 34 H 0.97004 * 120.00247 * 180.02562 * 7 6 4 35 35 H 1.09005 * 109.46570 * 299.99751 * 14 12 2 36 36 H 1.08998 * 109.47108 * 59.99583 * 14 12 2 37 37 H 1.08998 * 109.47190 * 299.99924 * 15 14 12 38 38 H 1.09003 * 109.46571 * 60.00034 * 15 14 12 39 39 H 1.09006 * 110.37170 * 332.46460 * 17 16 15 40 40 H 1.08998 * 110.37626 * 94.80318 * 17 16 15 41 41 H 1.08998 * 110.98960 * 278.97459 * 18 17 16 42 42 H 1.08995 * 111.01888 * 155.17529 * 18 17 16 43 43 H 0.97005 * 119.99756 * 88.69695 * 21 19 18 44 44 H 0.97006 * 120.00003 * 0.02562 * 24 22 21 45 45 H 1.08995 * 115.54804 * 9.32997 * 25 24 22 46 46 H 1.08998 * 117.49711 * 359.97438 * 26 25 24 47 47 H 1.08998 * 117.50018 * 145.02189 * 26 25 24 48 48 H 1.08993 * 117.50223 * 252.51577 * 27 26 25 49 49 H 1.09000 * 117.51953 * 107.47728 * 27 26 25 50 50 H 1.08999 * 109.88743 * 242.66921 * 28 16 15 51 51 H 1.08995 * 109.88170 * 3.69286 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 1.4209 5 1 2.0975 1.0960 2.2417 6 6 3.1315 2.8747 1.6729 7 7 3.5640 3.6118 0.6733 8 14 3.4435 3.4135 3.4341 9 1 2.8601 2.4166 4.3673 10 1 4.9062 3.5153 3.6689 11 1 2.8116 4.7372 3.6660 12 6 2.1388 -1.1672 -0.0005 13 8 3.3517 -1.1673 -0.0010 14 6 1.3853 -2.4723 -0.0017 15 6 2.3795 -3.6353 -0.0027 16 7 1.6450 -4.9074 -0.0032 17 6 0.9552 -5.1215 1.2867 18 6 0.9976 -6.6541 1.5085 19 6 2.3981 -7.0134 0.9461 20 1 3.1710 -6.8347 1.6937 21 7 2.4349 -8.4044 0.4879 22 6 2.8168 -9.3824 1.3329 23 8 3.1304 -9.1103 2.4757 24 7 2.8501 -10.6622 0.9114 25 6 3.2647 -11.7253 1.8301 26 6 4.2214 -12.7910 1.2915 27 6 2.7543 -13.1402 1.5497 28 6 2.5547 -6.0427 -0.2433 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6085 2.0284 -0.5137 33 1 3.1499 1.1384 -0.5139 34 1 4.0446 4.4355 0.8506 35 1 0.7584 -2.5306 0.8881 36 1 0.7590 -2.5294 -0.8919 37 1 3.0062 -3.5768 -0.8926 38 1 3.0062 -3.5783 0.8874 39 1 1.4835 -4.6071 2.0895 40 1 -0.0766 -4.7750 1.2274 41 1 0.2101 -7.1523 0.9431 42 1 0.9282 -6.8978 2.5686 43 1 2.1845 -8.6214 -0.4238 44 1 2.5996 -10.8793 -0.0002 45 1 3.3772 -11.4282 2.8727 46 1 4.5419 -12.7013 0.2536 47 1 4.9635 -13.1953 1.9799 48 1 2.5312 -13.7739 2.4079 49 1 2.1096 -13.2798 0.6820 50 1 2.2827 -6.5461 -1.1710 51 1 3.5834 -5.6874 -0.3021 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355104089.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:46 Heat of formation + Delta-G solvation = -28.420550 kcal Electronic energy + Delta-G solvation = -28723.361723 eV Core-core repulsion = 24658.771286 eV Total energy + Delta-G solvation = -4064.590437 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.61693 -39.41534 -38.65064 -37.51046 -35.00158 -34.67948 -33.34404 -32.63360 -31.82399 -29.66425 -28.34813 -27.41119 -25.72351 -23.94721 -23.01901 -22.89608 -22.25510 -21.43045 -21.05398 -20.71596 -19.00983 -18.28178 -17.23161 -16.61278 -16.51240 -16.13941 -15.61181 -15.50708 -15.27118 -15.17968 -14.92638 -14.63128 -14.30553 -14.09329 -13.83280 -13.37764 -13.18836 -13.00892 -12.71494 -12.40105 -12.17999 -12.14883 -12.09412 -12.00380 -11.82620 -11.71603 -11.50593 -11.42678 -11.15250 -11.07894 -11.00557 -10.89671 -10.73717 -10.56291 -10.53015 -10.14642 -9.59305 -9.50719 -9.06148 -8.87438 -8.48097 -8.42759 -7.61333 -6.03252 -4.07940 2.17766 2.73447 3.30452 3.37693 3.40979 3.47119 3.48764 3.58355 3.80894 4.13662 4.27280 4.34771 4.45097 4.47394 4.48597 4.51049 4.79800 5.06759 5.10077 5.10900 5.18685 5.22783 5.26364 5.30085 5.36724 5.40643 5.45141 5.55370 5.58559 5.64657 5.71212 5.75674 5.83330 5.86650 5.95220 6.06590 6.08789 6.11678 6.19983 6.24394 6.51515 6.79399 6.91517 7.08160 7.46531 7.56806 7.59072 7.93492 8.22285 8.25061 8.45077 8.91996 9.12563 9.57317 11.04811 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.021928 B = 0.001686 C = 0.001630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.601630 B =16607.532388 C =17168.533956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.603 5.603 3 C 0.244 3.756 4 C -0.526 4.526 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.504 3.496 13 O -0.546 6.546 14 C -0.133 4.133 15 C 0.066 3.934 16 N -0.526 5.526 17 C 0.039 3.961 18 C -0.139 4.139 19 C 0.142 3.858 20 H 0.099 0.901 21 N -0.733 5.733 22 C 0.708 3.292 23 O -0.586 6.586 24 N -0.719 5.719 25 C 0.101 3.899 26 C -0.196 4.196 27 C -0.191 4.191 28 C 0.038 3.962 29 H 0.044 0.956 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.031 0.969 33 H 0.044 0.956 34 H 0.262 0.738 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.047 0.953 39 H 0.054 0.946 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.397 0.603 44 H 0.397 0.603 45 H 0.139 0.861 46 H 0.096 0.904 47 H 0.102 0.898 48 H 0.103 0.897 49 H 0.096 0.904 50 H 0.081 0.919 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.405 -31.240 -3.475 32.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.335 5.335 3 C 0.125 3.875 4 C -0.564 4.564 5 H 0.076 0.924 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.210 1.210 12 C 0.290 3.710 13 O -0.425 6.425 14 C -0.173 4.173 15 C -0.062 4.062 16 N -0.251 5.251 17 C -0.089 4.089 18 C -0.178 4.178 19 C 0.035 3.965 20 H 0.117 0.883 21 N -0.388 5.388 22 C 0.408 3.592 23 O -0.463 6.463 24 N -0.372 5.372 25 C -0.006 4.006 26 C -0.235 4.235 27 C -0.230 4.230 28 C -0.090 4.090 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.049 0.951 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.103 0.897 36 H 0.111 0.889 37 H 0.101 0.899 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.103 0.897 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.232 0.768 44 H 0.231 0.769 45 H 0.157 0.843 46 H 0.115 0.885 47 H 0.121 0.879 48 H 0.122 0.878 49 H 0.115 0.885 50 H 0.099 0.901 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.737 -30.704 -2.857 31.564 hybrid contribution 0.415 0.166 0.649 0.788 sum -6.323 -30.538 -2.208 31.264 Atomic orbital electron populations 1.21632 0.81436 1.02527 1.00406 1.48153 1.06191 1.07877 1.71300 1.19284 0.92578 0.78193 0.97462 1.21484 1.36223 1.06369 0.92363 0.92450 1.24941 0.95365 0.96430 0.97429 1.69945 1.38232 1.14570 1.30642 0.86444 0.78085 0.78294 0.84611 1.19825 1.20877 1.20954 1.20315 0.88070 0.85204 0.77412 1.90665 1.14016 1.87389 1.50399 1.21586 0.99194 0.92557 1.03987 1.22069 0.94594 0.87000 1.02583 1.63601 1.27731 1.01781 1.31963 1.23093 1.00335 0.95116 0.90351 1.23117 0.96974 0.95744 1.01985 1.22115 0.98449 0.78997 0.96890 0.88302 1.45049 1.72647 1.06269 1.14799 1.15860 0.78057 0.80423 0.84829 1.90944 1.55406 1.82098 1.17872 1.44464 1.72667 1.04958 1.15104 1.21430 1.01760 0.82196 0.95206 1.23462 0.93409 1.03697 1.02939 1.23405 0.97168 0.98284 1.04143 1.23009 0.96805 0.91606 0.97623 0.93742 0.92404 0.90886 0.95054 0.93844 0.92792 0.89673 0.88885 0.89899 0.93438 0.92776 0.89674 0.90419 0.90331 0.76850 0.76905 0.84321 0.88540 0.87925 0.87814 0.88527 0.90078 0.91476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.33 10.24 59.85 0.61 1.94 16 2 N -0.60 -12.88 2.86 -182.95 -0.52 -13.41 16 3 C 0.24 6.48 5.16 -5.19 -0.03 6.45 16 4 C -0.53 -15.12 9.39 -34.44 -0.32 -15.44 16 5 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 7 N -0.89 -26.87 13.29 55.43 0.74 -26.13 16 8 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 9 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 10 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 C 0.50 10.43 7.67 -10.99 -0.08 10.34 16 13 O -0.55 -13.74 15.56 5.55 0.09 -13.65 16 14 C -0.13 -1.93 4.30 -27.88 -0.12 -2.05 16 15 C 0.07 0.91 3.85 -3.83 -0.01 0.89 16 16 N -0.53 -5.76 5.16 -231.25 -1.19 -6.95 16 17 C 0.04 0.39 5.78 -2.30 -0.01 0.38 16 18 C -0.14 -1.26 6.77 -24.59 -0.17 -1.43 16 19 C 0.14 1.33 3.30 -66.11 -0.22 1.11 16 20 H 0.10 1.16 7.55 -51.93 -0.39 0.77 16 21 N -0.73 -5.55 5.19 -56.90 -0.30 -5.85 16 22 C 0.71 7.00 8.57 -86.92 -0.74 6.26 16 23 O -0.59 -8.45 15.55 5.29 0.08 -8.37 16 24 N -0.72 -4.76 5.57 -58.68 -0.33 -5.09 16 25 C 0.10 0.67 6.43 -67.93 -0.44 0.23 16 26 C -0.20 -0.95 10.46 -26.73 -0.28 -1.23 16 27 C -0.19 -0.83 10.46 -26.73 -0.28 -1.11 16 28 C 0.04 0.35 6.61 -2.83 -0.02 0.34 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.74 6.44 -51.93 -0.33 0.41 16 31 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 32 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 33 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.08 1.12 6.75 -51.93 -0.35 0.77 16 36 H 0.09 1.19 8.11 -51.93 -0.42 0.77 16 37 H 0.08 1.21 7.99 -51.93 -0.41 0.79 16 38 H 0.05 0.74 7.80 -51.93 -0.41 0.33 16 39 H 0.05 0.60 7.62 -51.93 -0.40 0.21 16 40 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.40 1.83 8.38 -40.82 -0.34 1.49 16 44 H 0.40 1.45 8.84 -40.82 -0.36 1.09 16 45 H 0.14 1.17 7.40 -51.93 -0.38 0.79 16 46 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 50 H 0.08 0.62 7.72 -51.93 -0.40 0.22 16 51 H 0.07 0.67 7.54 -51.93 -0.39 0.28 16 LS Contribution 415.45 15.07 6.26 6.26 Total: -1.00 -36.46 415.45 -11.15 -47.61 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -8.74 Total: 0.13 kcal Atomic # 6 Polarization: 10.54 SS G_CDS: -2.21 Total: 8.33 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: -1.60 Total: -57.42 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: 0.17 Total: -22.02 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -36.46 -11.15 -47.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355104089.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.188 kcal (2) G-P(sol) polarization free energy of solvation -36.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds