Wall clock time and date at job start Tue Mar 31 2020 20:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46493 * 120.00066 * 2 1 4 4 C 1.50706 * 109.47128 * 90.00240 * 3 2 1 5 5 H 1.08000 * 119.99302 * 359.97438 * 4 3 2 6 6 C 1.37871 * 120.00436 * 179.72498 * 4 3 2 7 7 N 1.31515 * 119.99684 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 120.00405 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.46683 * 359.97438 * 8 6 4 10 10 H 1.48492 * 109.47426 * 119.99743 * 8 6 4 11 11 H 1.48501 * 109.46833 * 239.99986 * 8 6 4 12 12 C 1.34771 * 119.99478 * 180.02562 * 2 1 3 13 13 O 1.21285 * 119.99971 * 179.97438 * 12 2 1 14 14 C 1.50699 * 120.00631 * 0.02562 * 12 2 1 15 15 C 1.53000 * 109.47430 * 179.97438 * 14 12 2 16 16 N 1.46895 * 109.47086 * 179.97438 * 15 14 12 17 17 C 1.47844 * 111.00396 * 290.84513 * 16 15 14 18 18 C 1.54912 * 104.79768 * 213.63698 * 17 16 15 19 19 C 1.55138 * 101.65163 * 37.06620 * 18 17 16 20 20 H 1.09004 * 110.70286 * 82.72851 * 19 18 17 21 21 N 1.46496 * 110.85314 * 205.89211 * 19 18 17 22 22 C 1.34776 * 120.00142 * 268.68239 * 21 19 18 23 23 O 1.21583 * 120.00083 * 0.02562 * 22 21 19 24 24 N 1.34781 * 119.99963 * 179.97438 * 22 21 19 25 25 C 1.46497 * 119.99935 * 180.02562 * 24 22 21 26 26 C 1.53003 * 117.49685 * 223.62572 * 25 24 22 27 27 C 1.53003 * 60.00038 * 252.50897 * 26 25 24 28 28 C 1.47448 * 111.00138 * 170.00002 * 16 15 14 29 29 H 1.09004 * 109.47155 * 89.99624 * 1 2 3 30 30 H 1.08993 * 109.47381 * 209.99784 * 1 2 3 31 31 H 1.09002 * 109.46817 * 330.00021 * 1 2 3 32 32 H 1.09001 * 109.47786 * 330.00513 * 3 2 1 33 33 H 1.08998 * 109.47558 * 210.00376 * 3 2 1 34 34 H 0.97004 * 120.00247 * 180.02562 * 7 6 4 35 35 H 1.09005 * 109.46570 * 299.99751 * 14 12 2 36 36 H 1.08998 * 109.47108 * 59.99583 * 14 12 2 37 37 H 1.08998 * 109.47190 * 299.99924 * 15 14 12 38 38 H 1.09003 * 109.46571 * 60.00034 * 15 14 12 39 39 H 1.09006 * 110.37170 * 332.46460 * 17 16 15 40 40 H 1.08998 * 110.37626 * 94.80318 * 17 16 15 41 41 H 1.08998 * 110.98960 * 278.97459 * 18 17 16 42 42 H 1.08995 * 111.01888 * 155.17529 * 18 17 16 43 43 H 0.97005 * 119.99756 * 88.69695 * 21 19 18 44 44 H 0.97006 * 120.00003 * 0.02562 * 24 22 21 45 45 H 1.08995 * 115.54804 * 9.32997 * 25 24 22 46 46 H 1.08998 * 117.49711 * 359.97438 * 26 25 24 47 47 H 1.08998 * 117.50018 * 145.02189 * 26 25 24 48 48 H 1.08993 * 117.50223 * 252.51577 * 27 26 25 49 49 H 1.09000 * 117.51953 * 107.47728 * 27 26 25 50 50 H 1.08999 * 109.88743 * 242.66921 * 28 16 15 51 51 H 1.08995 * 109.88170 * 3.69286 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 1.4209 5 1 2.0975 1.0960 2.2417 6 6 3.1315 2.8747 1.6729 7 7 3.5640 3.6118 0.6733 8 14 3.4435 3.4135 3.4341 9 1 2.8601 2.4166 4.3673 10 1 4.9062 3.5153 3.6689 11 1 2.8116 4.7372 3.6660 12 6 2.1388 -1.1672 -0.0005 13 8 3.3517 -1.1673 -0.0010 14 6 1.3853 -2.4723 -0.0017 15 6 2.3795 -3.6353 -0.0027 16 7 1.6450 -4.9074 -0.0032 17 6 0.9552 -5.1215 1.2867 18 6 0.9976 -6.6541 1.5085 19 6 2.3981 -7.0134 0.9461 20 1 3.1710 -6.8347 1.6937 21 7 2.4349 -8.4044 0.4879 22 6 2.8168 -9.3824 1.3329 23 8 3.1304 -9.1103 2.4757 24 7 2.8501 -10.6622 0.9114 25 6 3.2647 -11.7253 1.8301 26 6 4.2214 -12.7910 1.2915 27 6 2.7543 -13.1402 1.5497 28 6 2.5547 -6.0427 -0.2433 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6085 2.0284 -0.5137 33 1 3.1499 1.1384 -0.5139 34 1 4.0446 4.4355 0.8506 35 1 0.7584 -2.5306 0.8881 36 1 0.7590 -2.5294 -0.8919 37 1 3.0062 -3.5768 -0.8926 38 1 3.0062 -3.5783 0.8874 39 1 1.4835 -4.6071 2.0895 40 1 -0.0766 -4.7750 1.2274 41 1 0.2101 -7.1523 0.9431 42 1 0.9282 -6.8978 2.5686 43 1 2.1845 -8.6214 -0.4238 44 1 2.5996 -10.8793 -0.0002 45 1 3.3772 -11.4282 2.8727 46 1 4.5419 -12.7013 0.2536 47 1 4.9635 -13.1953 1.9799 48 1 2.5312 -13.7739 2.4079 49 1 2.1096 -13.2798 0.6820 50 1 2.2827 -6.5461 -1.1710 51 1 3.5834 -5.6874 -0.3021 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355104089.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:45 Heat of formation + Delta-G solvation = -56.670483 kcal Electronic energy + Delta-G solvation = -28724.586732 eV Core-core repulsion = 24658.771286 eV Total energy + Delta-G solvation = -4065.815446 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.37953 -40.73686 -39.76086 -38.08946 -36.61730 -35.75318 -34.75318 -34.07025 -32.78652 -30.75941 -29.68594 -28.72536 -27.25436 -25.52112 -23.79091 -23.63586 -23.24701 -22.09563 -21.82139 -21.67192 -19.94179 -19.61594 -18.70944 -18.01261 -17.83932 -17.12571 -16.81700 -16.67327 -16.49250 -16.26331 -16.08293 -15.60299 -15.34037 -15.27101 -14.87598 -14.43003 -14.28739 -14.01237 -13.87673 -13.66398 -13.52696 -13.42903 -13.31177 -13.14024 -12.87521 -12.78507 -12.63170 -12.48985 -12.45347 -12.33779 -12.23558 -12.20913 -11.95451 -11.81295 -11.67430 -11.48324 -11.37392 -10.66182 -10.59423 -10.26700 -9.59629 -9.42234 -9.38811 -8.23671 -6.38666 1.34729 1.37248 1.48948 1.54185 1.86275 2.01058 2.29315 2.42169 2.94856 3.02864 3.05671 3.20958 3.51086 3.70039 3.83366 3.88443 3.98722 4.07189 4.08484 4.09253 4.19376 4.32734 4.34719 4.44105 4.61733 4.67578 4.74402 4.75377 4.78498 4.83418 4.90729 4.94411 4.97432 5.00870 5.03424 5.04752 5.05392 5.12601 5.22583 5.23894 5.49204 5.54675 5.56140 5.84737 5.89289 5.92691 5.97748 6.05589 6.69240 6.81032 7.04750 7.27530 7.50092 7.53100 8.83415 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.021928 B = 0.001686 C = 0.001630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.601630 B =16607.532388 C =17168.533956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.611 5.611 3 C 0.258 3.742 4 C -0.543 4.543 5 H 0.053 0.947 6 C 0.007 3.993 7 N -0.928 5.928 8 Si 0.968 3.032 9 H -0.268 1.268 10 H -0.282 1.282 11 H -0.267 1.267 12 C 0.493 3.507 13 O -0.603 6.603 14 C -0.113 4.113 15 C 0.073 3.927 16 N -0.516 5.516 17 C 0.036 3.964 18 C -0.129 4.129 19 C 0.146 3.854 20 H 0.068 0.932 21 N -0.717 5.717 22 C 0.703 3.297 23 O -0.638 6.638 24 N -0.703 5.703 25 C 0.070 3.930 26 C -0.189 4.189 27 C -0.171 4.171 28 C 0.041 3.959 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.064 0.936 32 H 0.024 0.976 33 H -0.003 1.003 34 H 0.267 0.733 35 H 0.108 0.892 36 H 0.124 0.876 37 H 0.071 0.929 38 H 0.021 0.979 39 H 0.039 0.961 40 H 0.104 0.896 41 H 0.095 0.905 42 H 0.067 0.933 43 H 0.415 0.585 44 H 0.414 0.586 45 H 0.113 0.887 46 H 0.105 0.895 47 H 0.105 0.895 48 H 0.110 0.890 49 H 0.112 0.888 50 H 0.108 0.892 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.779 -33.383 -3.891 35.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.342 5.342 3 C 0.136 3.864 4 C -0.582 4.582 5 H 0.071 0.929 6 C -0.192 4.192 7 N -0.568 5.568 8 Si 0.792 3.208 9 H -0.192 1.192 10 H -0.208 1.208 11 H -0.192 1.192 12 C 0.282 3.718 13 O -0.485 6.485 14 C -0.153 4.153 15 C -0.056 4.056 16 N -0.240 5.240 17 C -0.091 4.091 18 C -0.168 4.168 19 C 0.038 3.962 20 H 0.086 0.914 21 N -0.373 5.373 22 C 0.402 3.598 23 O -0.519 6.519 24 N -0.357 5.357 25 C -0.036 4.036 26 C -0.227 4.227 27 C -0.209 4.209 28 C -0.088 4.088 29 H 0.090 0.910 30 H 0.114 0.886 31 H 0.082 0.918 32 H 0.042 0.958 33 H 0.015 0.985 34 H 0.076 0.924 35 H 0.126 0.874 36 H 0.142 0.858 37 H 0.090 0.910 38 H 0.039 0.961 39 H 0.057 0.943 40 H 0.122 0.878 41 H 0.113 0.887 42 H 0.086 0.914 43 H 0.253 0.747 44 H 0.251 0.749 45 H 0.131 0.869 46 H 0.124 0.876 47 H 0.123 0.877 48 H 0.129 0.871 49 H 0.130 0.870 50 H 0.126 0.874 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.181 -32.899 -3.336 34.319 hybrid contribution 1.170 0.771 0.735 1.582 sum -8.012 -32.128 -2.601 33.213 Atomic orbital electron populations 1.21945 0.77716 1.04000 1.02688 1.48200 1.08520 1.06371 1.71155 1.18749 0.91134 0.80599 0.95927 1.21758 1.36638 1.06681 0.93129 0.92916 1.25865 0.94900 0.96466 1.01981 1.70058 1.38715 1.15054 1.32951 0.85366 0.77849 0.78459 0.79121 1.19193 1.20824 1.19231 1.21432 0.87798 0.86817 0.75755 1.90634 1.16835 1.88313 1.52757 1.21503 0.98785 0.88598 1.06379 1.21892 0.94316 0.88491 1.00890 1.63681 1.27208 1.00851 1.32277 1.23176 1.00879 0.95662 0.89411 1.23034 0.96989 0.95185 1.01607 1.21896 0.97934 0.79968 0.96360 0.91404 1.44792 1.72039 1.05149 1.15354 1.16081 0.77864 0.81481 0.84329 1.90911 1.57726 1.83018 1.20270 1.44277 1.71723 1.03782 1.15876 1.21432 1.04690 0.83174 0.94343 1.23518 0.93881 1.02008 1.03335 1.23476 0.96879 0.95725 1.04813 1.23056 0.96115 0.91064 0.98537 0.90974 0.88620 0.91755 0.95824 0.98495 0.92395 0.87351 0.85813 0.91025 0.96079 0.94303 0.87797 0.88676 0.91378 0.74706 0.74897 0.86947 0.87626 0.87700 0.87120 0.86967 0.87368 0.92587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.30 10.24 127.77 1.31 3.60 16 2 N -0.61 -26.12 2.86 -851.13 -2.43 -28.55 16 3 C 0.26 14.17 5.16 85.64 0.44 14.62 16 4 C -0.54 -31.98 9.39 25.60 0.24 -31.74 16 5 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 6 C 0.01 0.40 5.46 84.65 0.46 0.86 16 7 N -0.93 -56.96 13.29 21.45 0.28 -56.68 16 8 Si 0.97 45.74 29.54 68.60 2.03 47.77 16 9 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 10 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 11 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 12 C 0.49 20.51 7.67 87.66 0.67 21.18 16 13 O -0.60 -31.72 15.56 -3.04 -0.05 -31.76 16 14 C -0.11 -3.05 4.30 29.85 0.13 -2.92 16 15 C 0.07 1.97 3.85 86.30 0.33 2.31 16 16 N -0.52 -10.27 5.16 -885.54 -4.57 -14.84 16 17 C 0.04 0.66 5.78 86.78 0.50 1.16 16 18 C -0.13 -2.15 6.77 31.98 0.22 -1.93 16 19 C 0.15 2.64 3.30 46.17 0.15 2.79 16 20 H 0.07 1.69 7.55 -2.38 -0.02 1.67 16 21 N -0.72 -9.94 5.19 -452.19 -2.35 -12.29 16 22 C 0.70 13.69 8.57 179.05 1.53 15.23 16 23 O -0.64 -19.21 15.55 -3.98 -0.06 -19.27 16 24 N -0.70 -8.52 5.57 -457.81 -2.55 -11.07 16 25 C 0.07 0.90 6.43 44.99 0.29 1.19 16 26 C -0.19 -1.54 10.46 30.60 0.32 -1.22 16 27 C -0.17 -1.13 10.46 30.60 0.32 -0.81 16 28 C 0.04 0.70 6.61 86.64 0.57 1.27 16 29 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 30 H 0.10 2.07 6.44 -2.39 -0.02 2.06 16 31 H 0.06 2.00 8.07 -2.39 -0.02 1.98 16 32 H 0.02 1.31 8.07 -2.39 -0.02 1.30 16 33 H 0.00 -0.20 7.42 -2.39 -0.02 -0.21 16 34 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 35 H 0.11 2.48 6.75 -2.38 -0.02 2.47 16 36 H 0.12 2.68 8.11 -2.39 -0.02 2.66 16 37 H 0.07 2.10 7.99 -2.39 -0.02 2.08 16 38 H 0.02 0.68 7.80 -2.39 -0.02 0.66 16 39 H 0.04 0.84 7.62 -2.38 -0.02 0.82 16 40 H 0.10 1.54 8.14 -2.39 -0.02 1.53 16 41 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.42 2.72 8.38 -92.70 -0.78 1.94 16 44 H 0.41 2.06 8.84 -92.70 -0.82 1.24 16 45 H 0.11 2.05 7.40 -2.39 -0.02 2.03 16 46 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 48 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 49 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 50 H 0.11 1.31 7.72 -2.39 -0.02 1.29 16 51 H 0.06 1.11 7.54 -2.39 -0.02 1.09 16 Total: -1.00 -84.67 415.45 -2.86 -87.54 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -0.66 Total: 13.57 kcal Atomic # 6 Polarization: 18.10 SS G_CDS: 7.49 Total: 25.59 kcal Atomic # 7 Polarization: -111.82 SS G_CDS: -11.61 Total: -123.43 kcal Atomic # 8 Polarization: -50.93 SS G_CDS: -0.11 Total: -51.04 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -84.67 -2.86 -87.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355104089.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.865 kcal (2) G-P(sol) polarization free energy of solvation -84.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds