Wall clock time and date at job start Tue Mar 31 2020 20:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 120.00033 * 2 1 4 4 C 1.50699 * 109.46910 * 269.99488 * 3 2 1 5 5 H 1.08005 * 120.00059 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00327 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99207 * 0.02562 * 6 4 3 8 8 Si 1.86793 * 120.00491 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47350 * 90.00065 * 8 6 4 10 10 H 1.48504 * 109.47167 * 210.00420 * 8 6 4 11 11 H 1.48506 * 109.46906 * 330.00240 * 8 6 4 12 12 C 1.34779 * 120.00058 * 179.97438 * 2 1 3 13 13 O 1.21274 * 120.00216 * 180.02562 * 12 2 1 14 14 C 1.50705 * 119.99776 * 0.02562 * 12 2 1 15 15 C 1.52999 * 109.46726 * 179.97438 * 14 12 2 16 16 N 1.46902 * 109.46788 * 176.56666 * 15 14 12 17 17 C 1.48558 * 111.00314 * 174.86650 * 16 15 14 18 18 C 1.54374 * 104.59784 * 200.96072 * 17 16 15 19 19 C 1.54252 * 105.06347 * 23.85019 * 18 17 16 20 20 H 1.08998 * 110.32724 * 241.00827 * 19 18 17 21 21 N 1.46494 * 110.32552 * 118.89804 * 19 18 17 22 22 C 1.34770 * 120.00291 * 87.83360 * 21 19 18 23 23 O 1.21592 * 119.99931 * 359.97438 * 22 21 19 24 24 N 1.34778 * 120.00280 * 180.02562 * 22 21 19 25 25 C 1.46503 * 119.99913 * 179.71923 * 24 22 21 26 26 C 1.52999 * 117.49913 * 223.89561 * 25 24 22 27 27 C 1.53002 * 60.00074 * 252.51026 * 26 25 24 28 28 C 1.48720 * 111.01911 * 59.35645 * 16 15 14 29 29 H 1.08997 * 109.47558 * 270.00352 * 1 2 3 30 30 H 1.09003 * 109.46835 * 30.00619 * 1 2 3 31 31 H 1.09005 * 109.46807 * 150.00046 * 1 2 3 32 32 H 1.08998 * 109.47177 * 29.99656 * 3 2 1 33 33 H 1.09005 * 109.46886 * 149.99695 * 3 2 1 34 34 H 0.97011 * 119.99822 * 179.97438 * 7 6 4 35 35 H 1.08999 * 109.46979 * 59.99606 * 14 12 2 36 36 H 1.08995 * 109.46986 * 299.99857 * 14 12 2 37 37 H 1.08995 * 109.47396 * 56.56818 * 15 14 12 38 38 H 1.08999 * 109.47467 * 296.56332 * 15 14 12 39 39 H 1.09003 * 110.41047 * 82.17334 * 17 16 15 40 40 H 1.09004 * 110.51023 * 319.78718 * 17 16 15 41 41 H 1.09008 * 110.32413 * 264.95367 * 18 17 16 42 42 H 1.08998 * 110.32370 * 142.74946 * 18 17 16 43 43 H 0.96999 * 119.99814 * 267.82725 * 21 19 18 44 44 H 0.96999 * 119.99825 * 359.97438 * 24 22 21 45 45 H 1.08996 * 115.55094 * 9.60731 * 25 24 22 46 46 H 1.09002 * 117.50084 * 359.97438 * 26 25 24 47 47 H 1.08997 * 117.49687 * 145.02362 * 26 25 24 48 48 H 1.08996 * 117.50095 * 252.50996 * 27 26 25 49 49 H 1.09007 * 117.49851 * 107.48468 * 27 26 25 50 50 H 1.08998 * 110.38737 * 40.24389 * 28 16 15 51 51 H 1.09001 * 110.50812 * 277.75258 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0983 1.0956 -2.2417 6 6 3.1261 2.8778 -1.6729 7 7 3.5533 3.6180 -0.6732 8 14 3.4369 3.4173 -3.4340 9 1 2.3066 4.2599 -3.9005 10 1 4.6971 4.2006 -3.4967 11 1 3.5543 2.2202 -4.3050 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3853 -2.4723 0.0005 15 6 2.3796 -3.6352 0.0005 16 7 1.6470 -4.9058 0.0835 17 6 2.5714 -6.0624 -0.0379 18 6 1.6693 -7.2376 -0.4719 19 6 0.4493 -6.5782 -1.1473 20 1 -0.4644 -6.8329 -0.6103 21 7 0.3512 -7.0022 -2.5461 22 6 -0.3230 -8.1249 -2.8644 23 8 -0.8495 -8.7862 -1.9904 24 7 -0.4128 -8.5152 -4.1513 25 6 -1.1404 -9.7389 -4.4965 26 6 -0.4937 -10.6827 -5.5124 27 6 -1.7108 -9.8462 -5.9122 28 6 0.7141 -5.0596 -1.0645 29 1 -0.3634 0.0001 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5139 32 1 1.6084 2.0284 0.5138 33 1 3.1499 1.1384 0.5139 34 1 4.0302 4.4440 -0.8505 35 1 0.7590 -2.5302 -0.8897 36 1 0.7584 -2.5298 0.8903 37 1 3.0461 -3.5435 0.8581 38 1 2.9651 -3.6128 -0.9186 39 1 3.0398 -6.2771 0.9227 40 1 3.3309 -5.8665 -0.7949 41 1 1.3547 -7.8146 0.3977 42 1 2.1953 -7.8766 -1.1812 43 1 0.7715 -6.4747 -3.2433 44 1 0.0076 -7.9878 -4.8485 45 1 -1.7156 -10.1881 -3.6869 46 1 0.4731 -10.3928 -5.9242 47 1 -0.6432 -11.7530 -5.3711 48 1 -2.6609 -10.3662 -6.0340 49 1 -1.5445 -9.0061 -6.5867 50 1 1.1809 -4.7045 -1.9833 51 1 -0.2149 -4.5213 -0.8764 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355104091.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:49 Heat of formation + Delta-G solvation = -27.495332 kcal Electronic energy + Delta-G solvation = -28953.819098 eV Core-core repulsion = 24889.268782 eV Total energy + Delta-G solvation = -4064.550316 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.62273 -39.41885 -38.65577 -37.48273 -35.00879 -34.68460 -33.35619 -32.67370 -31.97186 -29.17709 -28.65558 -27.52051 -25.75835 -24.03560 -23.02961 -22.87299 -22.27962 -21.47960 -20.82884 -20.66838 -18.92367 -18.27046 -17.26782 -16.66133 -16.57270 -16.32639 -15.61925 -15.43534 -15.30763 -15.11791 -14.93875 -14.69307 -14.37993 -13.97795 -13.81096 -13.70099 -13.17601 -12.88022 -12.68098 -12.37076 -12.28637 -12.19309 -12.07325 -11.89566 -11.74497 -11.73589 -11.58866 -11.48255 -11.16808 -10.99250 -10.97676 -10.91929 -10.80730 -10.56576 -10.51906 -10.17993 -9.64696 -9.51436 -9.04803 -8.90974 -8.66616 -8.45662 -7.64916 -6.06172 -4.11025 2.20381 2.75363 3.27308 3.33702 3.36643 3.44476 3.49316 3.58377 3.83276 4.18776 4.26975 4.29538 4.43003 4.46330 4.50718 4.52556 4.84554 5.02500 5.07454 5.13441 5.13626 5.19862 5.26211 5.27531 5.32416 5.39635 5.45457 5.55678 5.57491 5.58334 5.73129 5.76585 5.79828 5.84726 5.92528 6.03357 6.05700 6.08797 6.19672 6.20968 6.52191 6.67496 6.84674 7.05204 7.43502 7.53035 7.60604 7.90120 8.21782 8.23991 8.41416 8.88204 9.08554 9.53915 11.01848 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.013711 B = 0.001956 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.675926 B =14313.437226 C =15515.814078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.603 5.603 3 C 0.244 3.756 4 C -0.526 4.526 5 H 0.056 0.944 6 C 0.060 3.940 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.275 1.275 12 C 0.504 3.496 13 O -0.545 6.545 14 C -0.137 4.137 15 C 0.062 3.938 16 N -0.507 5.507 17 C 0.032 3.968 18 C -0.133 4.133 19 C 0.160 3.840 20 H 0.102 0.898 21 N -0.739 5.739 22 C 0.709 3.291 23 O -0.586 6.586 24 N -0.719 5.719 25 C 0.101 3.899 26 C -0.197 4.197 27 C -0.192 4.192 28 C 0.024 3.976 29 H 0.045 0.955 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.032 0.968 33 H 0.044 0.956 34 H 0.263 0.737 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.045 0.955 39 H 0.085 0.915 40 H 0.046 0.954 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.396 0.604 44 H 0.397 0.603 45 H 0.139 0.861 46 H 0.096 0.904 47 H 0.102 0.898 48 H 0.104 0.896 49 H 0.097 0.903 50 H 0.051 0.949 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.096 -25.655 -6.467 28.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.335 5.335 3 C 0.125 3.875 4 C -0.565 4.565 5 H 0.074 0.926 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.200 1.200 12 C 0.290 3.710 13 O -0.424 6.424 14 C -0.177 4.177 15 C -0.066 4.066 16 N -0.232 5.232 17 C -0.096 4.096 18 C -0.172 4.172 19 C 0.054 3.946 20 H 0.120 0.880 21 N -0.394 5.394 22 C 0.409 3.591 23 O -0.464 6.464 24 N -0.373 5.373 25 C -0.005 4.005 26 C -0.236 4.236 27 C -0.230 4.230 28 C -0.105 4.105 29 H 0.063 0.937 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.102 0.898 36 H 0.113 0.887 37 H 0.107 0.893 38 H 0.063 0.937 39 H 0.103 0.897 40 H 0.065 0.935 41 H 0.098 0.902 42 H 0.090 0.910 43 H 0.230 0.770 44 H 0.231 0.769 45 H 0.157 0.843 46 H 0.114 0.886 47 H 0.120 0.880 48 H 0.122 0.878 49 H 0.115 0.885 50 H 0.070 0.930 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.122 -26.021 -5.045 28.373 hybrid contribution 0.998 1.064 -2.619 2.998 sum -9.123 -24.957 -7.664 27.656 Atomic orbital electron populations 1.21634 0.81432 1.02468 1.00480 1.48159 1.06185 1.07884 1.71273 1.19289 0.92594 0.78170 0.97454 1.21421 1.36530 1.06221 0.92289 0.92575 1.24948 0.95401 0.96432 0.97431 1.69938 1.38363 1.14304 1.30692 0.86495 0.77702 0.78542 0.84640 1.20635 1.21061 1.19993 1.20274 0.88059 0.85153 0.77465 1.90664 1.13989 1.87350 1.50367 1.21662 0.99248 0.92866 1.03944 1.22012 0.95063 0.86939 1.02564 1.65474 1.15776 1.02365 1.39538 1.23131 0.94675 0.90326 1.01480 1.22756 0.95900 0.97495 1.01087 1.21575 0.99909 0.93001 0.80116 0.88015 1.45293 1.58127 1.26511 1.09447 1.15841 0.79263 0.81259 0.82710 1.90933 1.52128 1.55988 1.47328 1.44491 1.58733 1.27165 1.06872 1.21424 0.98586 0.87102 0.93438 1.23463 0.97555 0.98416 1.04135 1.23411 0.98562 1.03047 0.97991 1.23428 0.98734 0.94653 0.93688 0.93664 0.90862 0.92496 0.95021 0.93825 0.92711 0.89809 0.88682 0.89337 0.93712 0.89668 0.93539 0.90159 0.90967 0.77006 0.76874 0.84306 0.88567 0.87950 0.87793 0.88485 0.93046 0.88923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.30 10.24 59.85 0.61 1.92 16 2 N -0.60 -12.66 2.86 -182.95 -0.52 -13.19 16 3 C 0.24 6.40 5.16 -5.19 -0.03 6.37 16 4 C -0.53 -14.87 9.39 -34.44 -0.32 -15.20 16 5 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 6 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 7 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 8 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 12 C 0.50 10.24 7.67 -10.98 -0.08 10.16 16 13 O -0.55 -13.50 15.53 5.56 0.09 -13.41 16 14 C -0.14 -1.93 4.01 -27.88 -0.11 -2.04 16 15 C 0.06 0.84 4.25 -3.82 -0.02 0.83 16 16 N -0.51 -5.58 5.45 -229.83 -1.25 -6.83 16 17 C 0.03 0.31 6.49 -2.19 -0.01 0.30 16 18 C -0.13 -1.21 6.79 -25.36 -0.17 -1.38 16 19 C 0.16 1.45 3.38 -66.56 -0.22 1.23 16 20 H 0.10 1.09 7.60 -51.93 -0.39 0.69 16 21 N -0.74 -5.83 5.04 -57.33 -0.29 -6.12 16 22 C 0.71 7.02 8.56 -86.92 -0.74 6.28 16 23 O -0.59 -8.18 15.58 5.29 0.08 -8.10 16 24 N -0.72 -5.02 5.57 -58.68 -0.33 -5.35 16 25 C 0.10 0.69 6.43 -67.93 -0.44 0.25 16 26 C -0.20 -0.99 10.46 -26.73 -0.28 -1.27 16 27 C -0.19 -0.90 10.46 -26.73 -0.28 -1.18 16 28 C 0.02 0.22 5.05 -2.09 -0.01 0.21 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 31 H 0.06 0.71 6.44 -51.93 -0.33 0.37 16 32 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 33 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.08 1.04 6.38 -51.93 -0.33 0.71 16 36 H 0.09 1.20 8.11 -51.93 -0.42 0.78 16 37 H 0.09 1.32 8.01 -51.93 -0.42 0.90 16 38 H 0.04 0.65 7.97 -51.93 -0.41 0.24 16 39 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.05 0.46 7.90 -51.93 -0.41 0.05 16 41 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 42 H 0.07 0.65 7.95 -51.93 -0.41 0.24 16 43 H 0.40 2.23 8.37 -40.82 -0.34 1.88 16 44 H 0.40 1.75 8.84 -40.82 -0.36 1.39 16 45 H 0.14 1.16 7.40 -51.93 -0.38 0.77 16 46 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.10 0.40 8.14 -51.92 -0.42 -0.02 16 50 H 0.05 0.46 7.58 -51.93 -0.39 0.07 16 51 H 0.09 0.82 7.76 -51.93 -0.40 0.42 16 LS Contribution 414.94 15.07 6.25 6.25 Total: -1.00 -35.67 414.94 -11.21 -46.87 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -8.75 Total: 0.90 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: -2.21 Total: 8.07 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: -1.65 Total: -57.31 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: 0.17 Total: -21.51 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -35.67 -11.21 -46.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355104091.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.379 kcal (2) G-P(sol) polarization free energy of solvation -35.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds