Wall clock time and date at job start Tue Mar 31 2020 20:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 120.00033 * 2 1 4 4 C 1.50699 * 109.46910 * 269.99488 * 3 2 1 5 5 H 1.08005 * 120.00059 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00327 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99207 * 0.02562 * 6 4 3 8 8 Si 1.86793 * 120.00491 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47350 * 90.00065 * 8 6 4 10 10 H 1.48504 * 109.47167 * 210.00420 * 8 6 4 11 11 H 1.48506 * 109.46906 * 330.00240 * 8 6 4 12 12 C 1.34779 * 120.00058 * 179.97438 * 2 1 3 13 13 O 1.21274 * 120.00216 * 180.02562 * 12 2 1 14 14 C 1.50705 * 119.99776 * 0.02562 * 12 2 1 15 15 C 1.52999 * 109.46726 * 179.97438 * 14 12 2 16 16 N 1.46902 * 109.46788 * 176.56666 * 15 14 12 17 17 C 1.48558 * 111.00314 * 174.86650 * 16 15 14 18 18 C 1.54374 * 104.59784 * 200.96072 * 17 16 15 19 19 C 1.54252 * 105.06347 * 23.85019 * 18 17 16 20 20 H 1.08998 * 110.32724 * 241.00827 * 19 18 17 21 21 N 1.46494 * 110.32552 * 118.89804 * 19 18 17 22 22 C 1.34770 * 120.00291 * 87.83360 * 21 19 18 23 23 O 1.21592 * 119.99931 * 359.97438 * 22 21 19 24 24 N 1.34778 * 120.00280 * 180.02562 * 22 21 19 25 25 C 1.46503 * 119.99913 * 179.71923 * 24 22 21 26 26 C 1.52999 * 117.49913 * 223.89561 * 25 24 22 27 27 C 1.53002 * 60.00074 * 252.51026 * 26 25 24 28 28 C 1.48720 * 111.01911 * 59.35645 * 16 15 14 29 29 H 1.08997 * 109.47558 * 270.00352 * 1 2 3 30 30 H 1.09003 * 109.46835 * 30.00619 * 1 2 3 31 31 H 1.09005 * 109.46807 * 150.00046 * 1 2 3 32 32 H 1.08998 * 109.47177 * 29.99656 * 3 2 1 33 33 H 1.09005 * 109.46886 * 149.99695 * 3 2 1 34 34 H 0.97011 * 119.99822 * 179.97438 * 7 6 4 35 35 H 1.08999 * 109.46979 * 59.99606 * 14 12 2 36 36 H 1.08995 * 109.46986 * 299.99857 * 14 12 2 37 37 H 1.08995 * 109.47396 * 56.56818 * 15 14 12 38 38 H 1.08999 * 109.47467 * 296.56332 * 15 14 12 39 39 H 1.09003 * 110.41047 * 82.17334 * 17 16 15 40 40 H 1.09004 * 110.51023 * 319.78718 * 17 16 15 41 41 H 1.09008 * 110.32413 * 264.95367 * 18 17 16 42 42 H 1.08998 * 110.32370 * 142.74946 * 18 17 16 43 43 H 0.96999 * 119.99814 * 267.82725 * 21 19 18 44 44 H 0.96999 * 119.99825 * 359.97438 * 24 22 21 45 45 H 1.08996 * 115.55094 * 9.60731 * 25 24 22 46 46 H 1.09002 * 117.50084 * 359.97438 * 26 25 24 47 47 H 1.08997 * 117.49687 * 145.02362 * 26 25 24 48 48 H 1.08996 * 117.50095 * 252.50996 * 27 26 25 49 49 H 1.09007 * 117.49851 * 107.48468 * 27 26 25 50 50 H 1.08998 * 110.38737 * 40.24389 * 28 16 15 51 51 H 1.09001 * 110.50812 * 277.75258 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0983 1.0956 -2.2417 6 6 3.1261 2.8778 -1.6729 7 7 3.5533 3.6180 -0.6732 8 14 3.4369 3.4173 -3.4340 9 1 2.3066 4.2599 -3.9005 10 1 4.6971 4.2006 -3.4967 11 1 3.5543 2.2202 -4.3050 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3853 -2.4723 0.0005 15 6 2.3796 -3.6352 0.0005 16 7 1.6470 -4.9058 0.0835 17 6 2.5714 -6.0624 -0.0379 18 6 1.6693 -7.2376 -0.4719 19 6 0.4493 -6.5782 -1.1473 20 1 -0.4644 -6.8329 -0.6103 21 7 0.3512 -7.0022 -2.5461 22 6 -0.3230 -8.1249 -2.8644 23 8 -0.8495 -8.7862 -1.9904 24 7 -0.4128 -8.5152 -4.1513 25 6 -1.1404 -9.7389 -4.4965 26 6 -0.4937 -10.6827 -5.5124 27 6 -1.7108 -9.8462 -5.9122 28 6 0.7141 -5.0596 -1.0645 29 1 -0.3634 0.0001 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5139 32 1 1.6084 2.0284 0.5138 33 1 3.1499 1.1384 0.5139 34 1 4.0302 4.4440 -0.8505 35 1 0.7590 -2.5302 -0.8897 36 1 0.7584 -2.5298 0.8903 37 1 3.0461 -3.5435 0.8581 38 1 2.9651 -3.6128 -0.9186 39 1 3.0398 -6.2771 0.9227 40 1 3.3309 -5.8665 -0.7949 41 1 1.3547 -7.8146 0.3977 42 1 2.1953 -7.8766 -1.1812 43 1 0.7715 -6.4747 -3.2433 44 1 0.0076 -7.9878 -4.8485 45 1 -1.7156 -10.1881 -3.6869 46 1 0.4731 -10.3928 -5.9242 47 1 -0.6432 -11.7530 -5.3711 48 1 -2.6609 -10.3662 -6.0340 49 1 -1.5445 -9.0061 -6.5867 50 1 1.1809 -4.7045 -1.9833 51 1 -0.2149 -4.5213 -0.8764 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355104091.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:48 Heat of formation + Delta-G solvation = -54.842105 kcal Electronic energy + Delta-G solvation = -28955.004943 eV Core-core repulsion = 24889.268782 eV Total energy + Delta-G solvation = -4065.736161 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.37454 -40.73415 -39.71335 -38.06604 -36.61842 -35.70606 -34.74701 -34.07974 -32.90666 -30.49916 -29.45414 -29.07566 -27.26131 -25.51112 -24.04063 -23.39780 -23.23958 -22.16664 -21.77108 -21.44100 -19.88987 -19.50930 -18.69947 -18.12034 -17.76246 -17.17122 -17.02124 -16.59361 -16.55148 -16.13610 -15.99079 -15.68415 -15.40222 -15.01017 -14.94234 -14.59156 -14.29600 -14.15462 -13.74133 -13.64010 -13.49177 -13.43351 -13.15754 -13.07796 -12.92000 -12.79832 -12.59650 -12.46307 -12.37999 -12.32278 -12.28247 -12.20396 -11.92123 -11.73565 -11.69631 -11.44898 -11.33809 -10.64501 -10.59465 -10.25892 -9.59088 -9.54590 -9.40128 -8.22406 -6.37555 1.36109 1.39120 1.49242 1.57364 1.86055 2.04104 2.29456 2.43198 2.94905 3.03992 3.06898 3.28758 3.50742 3.69552 3.84328 3.86722 4.04241 4.07863 4.09358 4.10620 4.17145 4.28745 4.40120 4.42778 4.60516 4.66009 4.74347 4.77773 4.78971 4.82209 4.90788 4.94633 4.98186 4.99026 5.03536 5.05099 5.08474 5.14233 5.22859 5.24261 5.43981 5.55390 5.56328 5.82847 5.84844 5.89401 5.97839 6.06053 6.69836 6.80850 7.03483 7.28261 7.49885 7.54678 8.84545 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.013711 B = 0.001956 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.675926 B =14313.437226 C =15515.814078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.611 5.611 3 C 0.257 3.743 4 C -0.541 4.541 5 H 0.054 0.946 6 C 0.004 3.996 7 N -0.929 5.929 8 Si 0.970 3.030 9 H -0.263 1.263 10 H -0.282 1.282 11 H -0.271 1.271 12 C 0.494 3.506 13 O -0.601 6.601 14 C -0.117 4.117 15 C 0.072 3.928 16 N -0.508 5.508 17 C 0.033 3.967 18 C -0.126 4.126 19 C 0.165 3.835 20 H 0.087 0.913 21 N -0.727 5.727 22 C 0.705 3.295 23 O -0.632 6.632 24 N -0.707 5.707 25 C 0.074 3.926 26 C -0.188 4.188 27 C -0.175 4.175 28 C 0.025 3.975 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.096 0.904 32 H 0.022 0.978 33 H -0.003 1.003 34 H 0.267 0.733 35 H 0.113 0.887 36 H 0.120 0.880 37 H 0.068 0.932 38 H 0.031 0.969 39 H 0.086 0.914 40 H 0.047 0.953 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.409 0.591 44 H 0.411 0.589 45 H 0.117 0.883 46 H 0.103 0.897 47 H 0.107 0.893 48 H 0.112 0.888 49 H 0.108 0.892 50 H 0.060 0.940 51 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.638 -26.610 -8.781 30.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.342 5.342 3 C 0.135 3.865 4 C -0.580 4.580 5 H 0.073 0.927 6 C -0.195 4.195 7 N -0.569 5.569 8 Si 0.794 3.206 9 H -0.188 1.188 10 H -0.208 1.208 11 H -0.196 1.196 12 C 0.283 3.717 13 O -0.483 6.483 14 C -0.157 4.157 15 C -0.057 4.057 16 N -0.233 5.233 17 C -0.095 4.095 18 C -0.165 4.165 19 C 0.059 3.941 20 H 0.105 0.895 21 N -0.383 5.383 22 C 0.405 3.595 23 O -0.513 6.513 24 N -0.360 5.360 25 C -0.033 4.033 26 C -0.227 4.227 27 C -0.213 4.213 28 C -0.103 4.103 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.115 0.885 32 H 0.040 0.960 33 H 0.015 0.985 34 H 0.076 0.924 35 H 0.131 0.869 36 H 0.138 0.862 37 H 0.087 0.913 38 H 0.049 0.951 39 H 0.105 0.895 40 H 0.065 0.935 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.246 0.754 44 H 0.248 0.752 45 H 0.135 0.865 46 H 0.121 0.879 47 H 0.126 0.874 48 H 0.130 0.870 49 H 0.126 0.874 50 H 0.078 0.922 51 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -11.705 -26.981 -7.402 30.328 hybrid contribution 1.464 1.309 -1.864 2.707 sum -10.241 -25.672 -9.265 29.151 Atomic orbital electron populations 1.21939 0.77786 1.04045 1.02594 1.48199 1.08463 1.06399 1.71174 1.18757 0.91089 0.80558 0.96056 1.21698 1.36796 1.06492 0.93001 0.92736 1.25906 0.94965 0.96496 1.02085 1.70064 1.38945 1.14775 1.33081 0.85386 0.78035 0.78226 0.78972 1.18791 1.20758 1.19611 1.21372 0.87787 0.86717 0.75798 1.90634 1.16759 1.88263 1.52674 1.21585 0.98868 0.88905 1.06348 1.21805 0.94762 0.88072 1.01074 1.65467 1.15803 1.01412 1.40572 1.23147 0.94649 0.90027 1.01678 1.22680 0.95747 0.97131 1.00975 1.21409 0.99112 0.93006 0.80586 0.89508 1.45106 1.57668 1.26077 1.09411 1.16025 0.79083 0.81306 0.83113 1.90903 1.54076 1.57451 1.48829 1.44353 1.58240 1.27230 1.06221 1.21442 1.00075 0.87787 0.93975 1.23514 0.98080 0.98507 1.02603 1.23477 0.98809 1.03056 0.96007 1.23480 0.98738 0.94689 0.93387 0.91239 0.91688 0.88525 0.95997 0.98529 0.92441 0.86929 0.86216 0.91303 0.95103 0.89545 0.93490 0.90611 0.90760 0.75409 0.75204 0.86481 0.87884 0.87443 0.87007 0.87385 0.92162 0.87720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.24 10.24 127.77 1.31 3.55 16 2 N -0.61 -25.50 2.86 -851.11 -2.43 -27.93 16 3 C 0.26 13.92 5.16 85.63 0.44 14.36 16 4 C -0.54 -31.08 9.39 25.60 0.24 -30.84 16 5 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 6 C 0.00 0.25 5.46 84.65 0.46 0.71 16 7 N -0.93 -56.30 13.29 21.45 0.28 -56.02 16 8 Si 0.97 44.50 29.54 68.60 2.03 46.53 16 9 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 10 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 11 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 12 C 0.49 19.95 7.67 87.66 0.67 20.62 16 13 O -0.60 -30.77 15.53 -3.01 -0.05 -30.81 16 14 C -0.12 -3.03 4.01 29.85 0.12 -2.91 16 15 C 0.07 1.85 4.25 86.30 0.37 2.22 16 16 N -0.51 -10.23 5.45 -881.06 -4.80 -15.03 16 17 C 0.03 0.60 6.49 86.45 0.56 1.16 16 18 C -0.13 -2.15 6.79 31.48 0.21 -1.93 16 19 C 0.17 2.74 3.38 45.89 0.15 2.90 16 20 H 0.09 1.77 7.60 -2.39 -0.02 1.75 16 21 N -0.73 -10.23 5.04 -453.56 -2.28 -12.51 16 22 C 0.70 13.31 8.56 179.06 1.53 14.85 16 23 O -0.63 -17.71 15.58 -4.00 -0.06 -17.77 16 24 N -0.71 -8.90 5.57 -457.81 -2.55 -11.45 16 25 C 0.07 0.94 6.43 44.99 0.29 1.23 16 26 C -0.19 -1.57 10.46 30.59 0.32 -1.25 16 27 C -0.18 -1.29 10.46 30.60 0.32 -0.97 16 28 C 0.03 0.40 5.05 86.42 0.44 0.84 16 29 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.06 1.97 8.07 -2.39 -0.02 1.95 16 31 H 0.10 1.99 6.44 -2.38 -0.02 1.97 16 32 H 0.02 1.21 8.07 -2.39 -0.02 1.19 16 33 H 0.00 -0.22 7.42 -2.38 -0.02 -0.23 16 34 H 0.27 15.14 8.31 -92.70 -0.77 14.37 16 35 H 0.11 2.31 6.38 -2.39 -0.02 2.30 16 36 H 0.12 2.59 8.11 -2.39 -0.02 2.57 16 37 H 0.07 2.06 8.01 -2.39 -0.02 2.04 16 38 H 0.03 0.88 7.97 -2.39 -0.02 0.86 16 39 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.05 0.87 7.90 -2.39 -0.02 0.85 16 41 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 42 H 0.07 1.25 7.95 -2.39 -0.02 1.23 16 43 H 0.41 3.59 8.37 -92.71 -0.78 2.81 16 44 H 0.41 2.72 8.84 -92.71 -0.82 1.90 16 45 H 0.12 2.02 7.40 -2.39 -0.02 2.00 16 46 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 49 H 0.11 0.58 8.14 -2.38 -0.02 0.56 16 50 H 0.06 0.88 7.58 -2.39 -0.02 0.87 16 51 H 0.10 1.45 7.76 -2.39 -0.02 1.43 16 Total: -1.00 -81.35 414.94 -3.08 -84.44 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -0.66 Total: 16.03 kcal Atomic # 6 Polarization: 17.09 SS G_CDS: 7.44 Total: 24.53 kcal Atomic # 7 Polarization: -111.16 SS G_CDS: -11.78 Total: -122.94 kcal Atomic # 8 Polarization: -48.47 SS G_CDS: -0.11 Total: -48.58 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -81.35 -3.08 -84.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355104091.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.595 kcal (2) G-P(sol) polarization free energy of solvation -81.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds