Wall clock time and date at job start Tue Mar 31 2020 20:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46491 * 120.00313 * 2 1 4 4 C 1.34787 * 119.99591 * 179.97438 * 2 1 3 5 5 O 1.21271 * 119.99852 * 0.02562 * 4 2 1 6 6 C 1.50702 * 119.99780 * 180.02562 * 4 2 1 7 7 N 1.46898 * 109.47095 * 180.02562 * 6 4 2 8 8 C 1.46893 * 110.99994 * 169.99989 * 7 6 4 9 9 C 1.53235 * 109.34100 * 187.25400 * 8 7 6 10 10 N 1.47082 * 108.52199 * 306.17062 * 9 8 7 11 11 C 1.34773 * 120.88263 * 231.18829 * 10 9 8 12 12 O 1.21281 * 120.00018 * 359.97438 * 11 10 9 13 13 C 1.50704 * 120.00090 * 179.97438 * 11 10 9 14 14 N 1.46502 * 109.47096 * 180.02562 * 13 11 10 15 15 C 1.36936 * 120.00275 * 89.99885 * 14 13 11 16 16 H 1.07997 * 120.00001 * 157.62501 * 15 14 13 17 17 C 1.38817 * 119.99822 * 337.62189 * 15 14 13 18 18 N 1.31613 * 120.00085 * 5.87460 * 17 15 14 19 19 Si 1.86798 * 119.99681 * 185.87663 * 17 15 14 20 20 H 1.48502 * 109.46740 * 180.02562 * 19 17 15 21 21 H 1.48497 * 109.47248 * 299.99554 * 19 17 15 22 22 H 1.48493 * 109.47412 * 60.00077 * 19 17 15 23 23 C 1.46496 * 119.99687 * 269.99910 * 14 13 11 24 24 C 1.52998 * 117.49995 * 183.24988 * 23 14 13 25 25 C 1.52998 * 117.50328 * 114.59060 * 23 14 13 26 26 C 1.47081 * 118.23583 * 51.45531 * 10 9 8 27 27 C 1.46903 * 110.99721 * 294.30288 * 7 6 4 28 28 H 1.08998 * 109.47381 * 270.00299 * 1 2 3 29 29 H 1.09001 * 109.46783 * 30.00444 * 1 2 3 30 30 H 1.09000 * 109.47161 * 149.99818 * 1 2 3 31 31 H 1.08996 * 109.47427 * 269.99864 * 3 2 1 32 32 H 1.08999 * 109.47139 * 29.99784 * 3 2 1 33 33 H 1.09007 * 109.47184 * 150.00054 * 3 2 1 34 34 H 1.08999 * 109.46898 * 59.99906 * 6 4 2 35 35 H 1.09000 * 109.46794 * 300.00368 * 6 4 2 36 36 H 1.09001 * 109.49277 * 67.29374 * 8 7 6 37 37 H 1.09006 * 109.49536 * 307.21410 * 8 7 6 38 38 H 1.09005 * 109.63344 * 186.46335 * 9 8 7 39 39 H 1.09003 * 109.63121 * 65.87797 * 9 8 7 40 40 H 1.09000 * 109.47218 * 59.99652 * 13 11 10 41 41 H 1.09000 * 109.46789 * 299.99250 * 13 11 10 42 42 H 0.97003 * 119.99929 * 174.99653 * 18 17 15 43 43 H 1.09002 * 115.55611 * 328.92203 * 23 14 13 44 44 H 1.09000 * 117.49889 * 0.02562 * 24 23 14 45 45 H 1.09001 * 117.50167 * 145.01482 * 24 23 14 46 46 H 1.08996 * 117.50737 * 214.98006 * 25 23 14 47 47 H 1.09007 * 117.49647 * 359.97438 * 25 23 14 48 48 H 1.08998 * 109.62523 * 68.25725 * 26 10 9 49 49 H 1.09005 * 109.62520 * 188.83431 * 26 10 9 50 50 H 1.08998 * 109.49042 * 292.70231 * 27 7 6 51 51 H 1.08995 * 109.49592 * 52.76128 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.1388 -1.1673 0.0005 5 8 1.5324 -2.2175 0.0005 6 6 3.6459 -1.1674 0.0011 7 7 4.1355 -2.5524 0.0010 8 6 5.5843 -2.5985 -0.2366 9 6 6.0241 -4.0562 -0.4096 10 7 5.5600 -4.8255 0.7549 11 6 6.4098 -5.6055 1.4520 12 8 7.5742 -5.6802 1.1213 13 6 5.9131 -6.3849 2.6424 14 7 7.0207 -7.1476 3.2235 15 6 7.7977 -6.5884 4.2027 16 1 8.3562 -7.2215 4.8762 17 6 7.8674 -5.2078 4.3296 18 7 7.0999 -4.4390 3.5866 19 14 9.0509 -4.4412 5.5548 20 1 8.9332 -2.9619 5.4975 21 1 8.7190 -4.9109 6.9239 22 1 10.4406 -4.8411 5.2175 23 6 7.2972 -8.5084 2.7569 24 6 8.4183 -9.2806 3.4553 25 6 8.6232 -8.7517 2.0336 26 6 4.1426 -4.7257 1.1349 27 6 3.7783 -3.2371 1.2506 28 1 -0.3634 0.0001 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 2.3792 1.5833 -1.0276 32 1 1.6085 2.0283 0.5138 33 1 3.1500 1.1382 0.5139 34 1 4.0088 -0.6534 0.8911 35 1 4.0095 -0.6537 -0.8888 36 1 6.1065 -2.1595 0.6135 37 1 5.8229 -2.0370 -1.1399 38 1 7.1112 -4.1059 -0.4715 39 1 5.5836 -4.4662 -1.3184 40 1 5.1265 -7.0698 2.3257 41 1 5.5165 -5.6957 3.3880 42 1 7.0953 -3.4790 3.7254 43 1 6.4292 -9.0757 2.4207 44 1 8.9499 -8.7762 4.2621 45 1 8.2880 -10.3558 3.5783 46 1 8.6278 -9.4790 1.2218 47 1 9.2899 -7.8989 1.9044 48 1 3.5248 -5.1989 0.3717 49 1 3.9853 -5.2183 2.0945 50 1 4.3256 -2.7892 2.0800 51 1 2.7071 -3.1383 1.4262 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355940217.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:58 Heat of formation + Delta-G solvation = 27.375171 kcal Electronic energy + Delta-G solvation = -31277.498611 eV Core-core repulsion = 27215.327658 eV Total energy + Delta-G solvation = -4062.170953 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -40.18748 -38.90376 -37.33952 -36.32064 -35.61960 -33.68234 -33.31170 -30.91236 -30.20530 -29.60277 -27.96300 -26.84698 -25.96183 -24.19896 -23.65620 -22.92520 -21.31826 -20.62042 -19.80492 -19.40994 -18.19073 -17.11759 -16.43145 -16.38173 -16.16007 -15.79344 -15.61828 -14.84448 -14.72588 -14.48891 -14.22595 -14.20559 -14.03526 -13.71749 -13.40731 -13.06776 -12.96902 -12.84198 -12.57180 -12.47511 -12.29469 -12.19684 -11.88923 -11.61320 -11.48433 -11.01249 -10.90044 -10.83541 -10.77731 -10.71096 -10.62708 -10.33066 -10.10312 -9.92727 -9.74768 -9.62561 -9.25055 -8.91684 -8.58579 -8.24694 -8.15033 -7.51240 -6.65895 -5.78312 -3.18937 2.53476 2.72526 3.38218 3.42980 3.46237 3.87785 4.14189 4.34767 4.40996 4.57010 4.73173 4.93771 4.98421 5.04626 5.07326 5.15653 5.24565 5.30453 5.33773 5.36998 5.46192 5.53602 5.56151 5.68986 5.73951 5.83400 5.93263 5.94728 6.11064 6.15177 6.16713 6.25351 6.31440 6.33251 6.45592 6.50466 6.57089 6.67166 6.80867 6.94656 7.03653 7.20350 7.23708 7.28205 7.36428 7.59284 7.78921 8.08735 8.35679 8.70110 9.20649 9.77371 9.93651 10.29621 11.26931 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.016181 B = 0.003059 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.062622 B = 9152.599445 C = 9929.747468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.630 5.630 3 C 0.078 3.922 4 C 0.514 3.486 5 O -0.515 6.515 6 C 0.039 3.961 7 N -0.521 5.521 8 C 0.046 3.954 9 C 0.126 3.874 10 N -0.630 5.630 11 C 0.541 3.459 12 O -0.538 6.538 13 C 0.171 3.829 14 N -0.546 5.546 15 C -0.244 4.244 16 H 0.078 0.922 17 C 0.009 3.991 18 N -0.906 5.906 19 Si 0.912 3.088 20 H -0.293 1.293 21 H -0.285 1.285 22 H -0.285 1.285 23 C 0.124 3.876 24 C -0.199 4.199 25 C -0.213 4.213 26 C 0.132 3.868 27 C 0.040 3.960 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.100 0.900 36 H 0.041 0.959 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.055 0.945 40 H 0.027 0.973 41 H 0.116 0.884 42 H 0.252 0.748 43 H 0.088 0.912 44 H 0.095 0.905 45 H 0.076 0.924 46 H 0.068 0.932 47 H 0.093 0.907 48 H 0.060 0.940 49 H 0.085 0.915 50 H 0.040 0.960 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.021 10.431 -7.589 17.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.366 5.366 3 C -0.066 4.066 4 C 0.302 3.698 5 O -0.389 6.389 6 C -0.092 4.092 7 N -0.246 5.246 8 C -0.082 4.082 9 C 0.002 3.998 10 N -0.368 5.368 11 C 0.330 3.670 12 O -0.412 6.412 13 C 0.042 3.958 14 N -0.262 5.262 15 C -0.373 4.373 16 H 0.096 0.904 17 C -0.188 4.188 18 N -0.552 5.552 19 Si 0.743 3.257 20 H -0.219 1.219 21 H -0.212 1.212 22 H -0.211 1.211 23 C 0.015 3.985 24 C -0.237 4.237 25 C -0.254 4.254 26 C 0.007 3.993 27 C -0.088 4.088 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.118 0.882 36 H 0.060 0.940 37 H 0.092 0.908 38 H 0.106 0.894 39 H 0.073 0.927 40 H 0.045 0.955 41 H 0.133 0.867 42 H 0.063 0.937 43 H 0.106 0.894 44 H 0.113 0.887 45 H 0.094 0.906 46 H 0.087 0.913 47 H 0.112 0.888 48 H 0.078 0.922 49 H 0.104 0.896 50 H 0.058 0.942 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.877 9.731 -8.102 17.361 hybrid contribution 1.152 1.503 1.157 2.220 sum -10.725 11.234 -6.945 17.014 Atomic orbital electron populations 1.21597 0.79247 1.02999 1.01743 1.47805 1.07080 1.06445 1.75303 1.21815 0.97430 0.85399 1.01925 1.20686 0.90183 0.83084 0.75857 1.90677 1.69946 1.30607 1.47645 1.21963 0.91948 0.92597 1.02715 1.61681 1.13988 1.12130 1.36782 1.22503 0.86444 0.98751 1.00516 1.21285 1.00461 0.88961 0.89081 1.48336 1.09150 1.48545 1.30771 1.21861 0.85597 0.78114 0.81435 1.90481 1.17450 1.65271 1.68040 1.20705 0.88233 0.93239 0.93655 1.43275 1.33031 1.09906 1.40015 1.19233 1.22258 0.89626 1.06164 0.90442 1.24947 0.98877 0.96204 0.98812 1.69623 1.40843 1.04047 1.40720 0.86205 0.81573 0.77869 0.80060 1.21853 1.21178 1.21120 1.21091 0.89800 0.87797 0.99831 1.23102 1.05843 0.97799 0.96952 1.23331 1.06441 1.02616 0.93052 1.21547 0.82540 0.94614 1.00581 1.22712 1.01605 0.95449 0.89083 0.92880 0.91480 0.90455 0.92460 0.90993 0.90852 0.92075 0.88187 0.94027 0.90792 0.89449 0.92682 0.95488 0.86671 0.93695 0.89427 0.88654 0.90588 0.91308 0.88843 0.92205 0.89633 0.94219 0.89108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.68 10.44 59.85 0.62 1.30 16 2 N -0.63 -5.83 3.27 -189.52 -0.62 -6.45 16 3 C 0.08 0.44 10.24 59.84 0.61 1.05 16 4 C 0.51 6.42 7.34 -10.98 -0.08 6.34 16 5 O -0.51 -8.30 13.91 5.57 0.08 -8.23 16 6 C 0.04 0.45 4.00 -4.98 -0.02 0.43 16 7 N -0.52 -7.70 4.37 -235.47 -1.03 -8.73 16 8 C 0.05 0.70 5.62 -3.71 -0.02 0.68 16 9 C 0.13 2.27 6.60 -3.60 -0.02 2.25 16 10 N -0.63 -12.69 3.00 -172.17 -0.52 -13.20 16 11 C 0.54 13.07 5.62 -10.98 -0.06 13.01 16 12 O -0.54 -15.17 15.59 5.56 0.09 -15.08 16 13 C 0.17 4.05 3.83 -5.19 -0.02 4.03 16 14 N -0.55 -13.83 2.35 -167.02 -0.39 -14.23 16 15 C -0.24 -6.64 9.14 -15.06 -0.14 -6.77 16 16 H 0.08 2.07 5.93 -52.49 -0.31 1.76 16 17 C 0.01 0.23 5.39 -17.43 -0.09 0.14 16 18 N -0.91 -24.84 8.15 55.49 0.45 -24.39 16 19 Si 0.91 22.20 29.56 -169.99 -5.03 17.17 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.28 -7.09 7.11 56.52 0.40 -6.68 16 23 C 0.12 2.76 6.56 -67.93 -0.45 2.32 16 24 C -0.20 -4.03 9.81 -26.70 -0.26 -4.29 16 25 C -0.21 -4.63 10.36 -26.70 -0.28 -4.91 16 26 C 0.13 2.28 6.53 -3.36 -0.02 2.26 16 27 C 0.04 0.64 5.27 -3.46 -0.02 0.63 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.35 8.07 -51.93 -0.42 -0.07 16 30 H 0.08 0.73 7.42 -51.93 -0.39 0.34 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.07 0.29 8.07 -51.93 -0.42 -0.12 16 33 H 0.07 0.39 6.44 -51.93 -0.33 0.06 16 34 H 0.06 0.66 7.38 -51.93 -0.38 0.28 16 35 H 0.10 0.93 7.93 -51.93 -0.41 0.52 16 36 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.92 7.99 -51.93 -0.41 0.50 16 38 H 0.09 1.76 7.06 -51.93 -0.37 1.39 16 39 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.03 0.57 7.92 -51.93 -0.41 0.16 16 41 H 0.12 2.90 5.85 -51.93 -0.30 2.59 16 42 H 0.25 6.91 8.32 -40.82 -0.34 6.57 16 43 H 0.09 1.75 8.14 -51.93 -0.42 1.32 16 44 H 0.10 2.07 6.14 -51.93 -0.32 1.75 16 45 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 46 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 47 H 0.09 2.36 8.14 -51.92 -0.42 1.93 16 48 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 49 H 0.09 1.48 6.02 -51.93 -0.31 1.17 16 50 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 51 H 0.09 1.48 5.76 -51.93 -0.30 1.18 16 LS Contribution 396.02 15.07 5.97 5.97 Total: -1.00 -34.24 396.02 -9.70 -43.94 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -8.45 Total: 4.76 kcal Atomic # 6 Polarization: 18.72 SS G_CDS: -0.25 Total: 18.48 kcal Atomic # 7 Polarization: -64.90 SS G_CDS: -2.11 Total: -67.01 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: 0.16 Total: -23.31 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.03 Total: 17.17 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.24 -9.70 -43.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355940217.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.315 kcal (2) G-P(sol) polarization free energy of solvation -34.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds