Wall clock time and date at job start Tue Mar 31 2020 20:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46491 * 120.00313 * 2 1 4 4 C 1.34787 * 119.99591 * 179.97438 * 2 1 3 5 5 O 1.21271 * 119.99852 * 0.02562 * 4 2 1 6 6 C 1.50702 * 119.99780 * 180.02562 * 4 2 1 7 7 N 1.46898 * 109.47095 * 180.02562 * 6 4 2 8 8 C 1.46893 * 110.99994 * 169.99989 * 7 6 4 9 9 C 1.53235 * 109.34100 * 187.25400 * 8 7 6 10 10 N 1.47082 * 108.52199 * 306.17062 * 9 8 7 11 11 C 1.34773 * 120.88263 * 231.18829 * 10 9 8 12 12 O 1.21281 * 120.00018 * 359.97438 * 11 10 9 13 13 C 1.50704 * 120.00090 * 179.97438 * 11 10 9 14 14 N 1.46502 * 109.47096 * 180.02562 * 13 11 10 15 15 C 1.36936 * 120.00275 * 89.99885 * 14 13 11 16 16 H 1.07997 * 120.00001 * 157.62501 * 15 14 13 17 17 C 1.38817 * 119.99822 * 337.62189 * 15 14 13 18 18 N 1.31613 * 120.00085 * 5.87460 * 17 15 14 19 19 Si 1.86798 * 119.99681 * 185.87663 * 17 15 14 20 20 H 1.48502 * 109.46740 * 180.02562 * 19 17 15 21 21 H 1.48497 * 109.47248 * 299.99554 * 19 17 15 22 22 H 1.48493 * 109.47412 * 60.00077 * 19 17 15 23 23 C 1.46496 * 119.99687 * 269.99910 * 14 13 11 24 24 C 1.52998 * 117.49995 * 183.24988 * 23 14 13 25 25 C 1.52998 * 117.50328 * 114.59060 * 23 14 13 26 26 C 1.47081 * 118.23583 * 51.45531 * 10 9 8 27 27 C 1.46903 * 110.99721 * 294.30288 * 7 6 4 28 28 H 1.08998 * 109.47381 * 270.00299 * 1 2 3 29 29 H 1.09001 * 109.46783 * 30.00444 * 1 2 3 30 30 H 1.09000 * 109.47161 * 149.99818 * 1 2 3 31 31 H 1.08996 * 109.47427 * 269.99864 * 3 2 1 32 32 H 1.08999 * 109.47139 * 29.99784 * 3 2 1 33 33 H 1.09007 * 109.47184 * 150.00054 * 3 2 1 34 34 H 1.08999 * 109.46898 * 59.99906 * 6 4 2 35 35 H 1.09000 * 109.46794 * 300.00368 * 6 4 2 36 36 H 1.09001 * 109.49277 * 67.29374 * 8 7 6 37 37 H 1.09006 * 109.49536 * 307.21410 * 8 7 6 38 38 H 1.09005 * 109.63344 * 186.46335 * 9 8 7 39 39 H 1.09003 * 109.63121 * 65.87797 * 9 8 7 40 40 H 1.09000 * 109.47218 * 59.99652 * 13 11 10 41 41 H 1.09000 * 109.46789 * 299.99250 * 13 11 10 42 42 H 0.97003 * 119.99929 * 174.99653 * 18 17 15 43 43 H 1.09002 * 115.55611 * 328.92203 * 23 14 13 44 44 H 1.09000 * 117.49889 * 0.02562 * 24 23 14 45 45 H 1.09001 * 117.50167 * 145.01482 * 24 23 14 46 46 H 1.08996 * 117.50737 * 214.98006 * 25 23 14 47 47 H 1.09007 * 117.49647 * 359.97438 * 25 23 14 48 48 H 1.08998 * 109.62523 * 68.25725 * 26 10 9 49 49 H 1.09005 * 109.62520 * 188.83431 * 26 10 9 50 50 H 1.08998 * 109.49042 * 292.70231 * 27 7 6 51 51 H 1.08995 * 109.49592 * 52.76128 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.1388 -1.1673 0.0005 5 8 1.5324 -2.2175 0.0005 6 6 3.6459 -1.1674 0.0011 7 7 4.1355 -2.5524 0.0010 8 6 5.5843 -2.5985 -0.2366 9 6 6.0241 -4.0562 -0.4096 10 7 5.5600 -4.8255 0.7549 11 6 6.4098 -5.6055 1.4520 12 8 7.5742 -5.6802 1.1213 13 6 5.9131 -6.3849 2.6424 14 7 7.0207 -7.1476 3.2235 15 6 7.7977 -6.5884 4.2027 16 1 8.3562 -7.2215 4.8762 17 6 7.8674 -5.2078 4.3296 18 7 7.0999 -4.4390 3.5866 19 14 9.0509 -4.4412 5.5548 20 1 8.9332 -2.9619 5.4975 21 1 8.7190 -4.9109 6.9239 22 1 10.4406 -4.8411 5.2175 23 6 7.2972 -8.5084 2.7569 24 6 8.4183 -9.2806 3.4553 25 6 8.6232 -8.7517 2.0336 26 6 4.1426 -4.7257 1.1349 27 6 3.7783 -3.2371 1.2506 28 1 -0.3634 0.0001 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 2.3792 1.5833 -1.0276 32 1 1.6085 2.0283 0.5138 33 1 3.1500 1.1382 0.5139 34 1 4.0088 -0.6534 0.8911 35 1 4.0095 -0.6537 -0.8888 36 1 6.1065 -2.1595 0.6135 37 1 5.8229 -2.0370 -1.1399 38 1 7.1112 -4.1059 -0.4715 39 1 5.5836 -4.4662 -1.3184 40 1 5.1265 -7.0698 2.3257 41 1 5.5165 -5.6957 3.3880 42 1 7.0953 -3.4790 3.7254 43 1 6.4292 -9.0757 2.4207 44 1 8.9499 -8.7762 4.2621 45 1 8.2880 -10.3558 3.5783 46 1 8.6278 -9.4790 1.2218 47 1 9.2899 -7.8989 1.9044 48 1 3.5248 -5.1989 0.3717 49 1 3.9853 -5.2183 2.0945 50 1 4.3256 -2.7892 2.0800 51 1 2.7071 -3.1383 1.4262 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355940217.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:57 Heat of formation + Delta-G solvation = 3.975841 kcal Electronic energy + Delta-G solvation = -31278.513282 eV Core-core repulsion = 27215.327658 eV Total energy + Delta-G solvation = -4063.185624 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.22690 -40.42205 -38.91273 -37.96640 -36.47649 -35.26102 -35.16830 -32.55063 -31.92789 -30.65370 -28.97855 -28.26602 -27.07747 -25.74740 -24.99726 -24.41651 -23.00990 -22.10247 -21.62169 -20.27019 -19.77817 -18.31134 -18.04826 -17.73855 -17.51201 -17.02050 -16.95069 -16.51828 -16.05692 -15.90549 -15.83779 -15.55871 -15.36400 -15.25900 -14.48531 -14.41042 -14.19913 -14.11788 -13.80705 -13.48107 -13.41206 -13.35269 -13.03014 -12.94783 -12.87394 -12.79954 -12.74453 -12.55079 -12.30750 -12.20795 -12.13142 -12.05105 -11.95457 -11.80405 -11.50604 -10.94512 -10.78605 -10.56404 -10.12197 -9.64947 -9.49294 -9.09520 -8.59956 -7.83606 -5.24837 1.40919 1.46226 1.49220 1.62393 1.97096 2.38266 2.41530 2.64682 2.97545 3.21539 3.40015 3.57981 3.61334 3.92887 4.10194 4.12554 4.20173 4.28471 4.34078 4.35758 4.42664 4.45553 4.46823 4.49625 4.52152 4.52494 4.57364 4.66927 4.79569 4.81338 4.86665 4.90866 4.92274 4.94445 4.95073 4.98961 5.09781 5.15517 5.31417 5.42520 5.52723 5.53972 5.69359 5.86157 5.95409 6.04831 6.35247 6.37959 6.93650 7.19072 7.21097 7.82562 8.07681 8.29101 9.18029 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.016181 B = 0.003059 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.062622 B = 9152.599445 C = 9929.747468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.626 5.626 3 C 0.070 3.930 4 C 0.508 3.492 5 O -0.562 6.562 6 C 0.040 3.960 7 N -0.526 5.526 8 C 0.059 3.941 9 C 0.123 3.877 10 N -0.628 5.628 11 C 0.540 3.460 12 O -0.587 6.587 13 C 0.173 3.827 14 N -0.563 5.563 15 C -0.254 4.254 16 H 0.076 0.924 17 C -0.039 4.039 18 N -0.914 5.914 19 Si 0.965 3.035 20 H -0.296 1.296 21 H -0.272 1.272 22 H -0.295 1.295 23 C 0.103 3.897 24 C -0.177 4.177 25 C -0.215 4.215 26 C 0.130 3.870 27 C 0.054 3.946 28 H 0.055 0.945 29 H 0.098 0.902 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.130 0.870 36 H 0.019 0.981 37 H 0.110 0.890 38 H 0.061 0.939 39 H 0.071 0.929 40 H 0.053 0.947 41 H 0.097 0.903 42 H 0.243 0.757 43 H 0.115 0.885 44 H 0.076 0.924 45 H 0.117 0.883 46 H 0.097 0.903 47 H 0.049 0.951 48 H 0.073 0.927 49 H 0.082 0.918 50 H 0.018 0.982 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.157 11.333 -8.270 19.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.360 5.360 3 C -0.072 4.072 4 C 0.296 3.704 5 O -0.440 6.440 6 C -0.090 4.090 7 N -0.251 5.251 8 C -0.069 4.069 9 C -0.001 4.001 10 N -0.364 5.364 11 C 0.330 3.670 12 O -0.466 6.466 13 C 0.044 3.956 14 N -0.280 5.280 15 C -0.384 4.384 16 H 0.094 0.906 17 C -0.234 4.234 18 N -0.561 5.561 19 Si 0.795 3.205 20 H -0.222 1.222 21 H -0.198 1.198 22 H -0.222 1.222 23 C -0.005 4.005 24 C -0.215 4.215 25 C -0.256 4.256 26 C 0.007 3.993 27 C -0.075 4.075 28 H 0.073 0.927 29 H 0.117 0.883 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.110 0.890 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.148 0.852 36 H 0.037 0.963 37 H 0.128 0.872 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.071 0.929 41 H 0.115 0.885 42 H 0.053 0.947 43 H 0.133 0.867 44 H 0.094 0.906 45 H 0.135 0.865 46 H 0.115 0.885 47 H 0.067 0.933 48 H 0.091 0.909 49 H 0.101 0.899 50 H 0.036 0.964 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.064 10.685 -8.793 19.030 hybrid contribution 1.437 1.264 1.306 2.317 sum -11.627 11.949 -7.487 18.276 Atomic orbital electron populations 1.21709 0.78499 1.03559 1.02087 1.47929 1.07823 1.06782 1.73499 1.22087 0.97612 0.84030 1.03442 1.20849 0.90487 0.83420 0.75616 1.90655 1.70706 1.32378 1.50247 1.22066 0.91626 0.90765 1.04579 1.61641 1.13401 1.14421 1.35617 1.22368 0.86526 0.96770 1.01265 1.21401 0.99060 0.90830 0.88791 1.48282 1.09863 1.47580 1.30712 1.21880 0.85182 0.78360 0.81580 1.90452 1.19482 1.67118 1.69540 1.20645 0.88539 0.93388 0.93031 1.43459 1.33273 1.11153 1.40144 1.19433 1.22262 0.89905 1.06764 0.90632 1.25577 1.00274 0.96798 1.00779 1.69794 1.41468 1.03314 1.41525 0.85377 0.79256 0.76773 0.79141 1.22204 1.19771 1.22179 1.21471 0.91130 0.86976 1.00950 1.23118 1.03617 0.99631 0.95121 1.23184 1.05265 1.01996 0.95136 1.21678 0.80950 0.95854 1.00813 1.22482 1.01216 0.94536 0.89230 0.92664 0.88333 0.92453 0.90725 0.89025 0.90461 0.91044 0.85224 0.96277 0.87164 0.92083 0.91032 0.92878 0.88498 0.94691 0.86699 0.90586 0.86500 0.88484 0.93263 0.90900 0.89948 0.96391 0.88896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.16 10.44 127.77 1.33 2.49 16 2 N -0.63 -10.19 3.27 -871.91 -2.85 -13.05 16 3 C 0.07 0.56 10.24 127.77 1.31 1.87 16 4 C 0.51 11.95 7.34 87.66 0.64 12.60 16 5 O -0.56 -17.90 13.91 -3.00 -0.04 -17.94 16 6 C 0.04 0.84 4.00 85.56 0.34 1.18 16 7 N -0.53 -14.92 4.37 -898.90 -3.93 -18.85 16 8 C 0.06 1.73 5.62 86.38 0.49 2.22 16 9 C 0.12 4.43 6.60 86.35 0.57 5.00 16 10 N -0.63 -25.67 3.00 -817.03 -2.45 -28.12 16 11 C 0.54 26.77 5.62 87.66 0.49 27.26 16 12 O -0.59 -34.35 15.59 -3.03 -0.05 -34.39 16 13 C 0.17 8.34 3.83 85.63 0.33 8.66 16 14 N -0.56 -28.88 2.35 -682.34 -1.61 -30.48 16 15 C -0.25 -14.09 9.14 84.03 0.77 -13.32 16 16 H 0.08 4.11 5.93 -2.91 -0.02 4.10 16 17 C -0.04 -2.20 5.39 84.86 0.46 -1.74 16 18 N -0.91 -51.63 8.15 21.65 0.18 -51.45 16 19 Si 0.96 46.57 29.56 68.60 2.03 48.60 16 20 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 21 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 22 H -0.29 -14.58 7.11 99.48 0.71 -13.87 16 23 C 0.10 4.50 6.56 44.99 0.30 4.79 16 24 C -0.18 -6.90 9.81 30.62 0.30 -6.60 16 25 C -0.21 -9.25 10.36 30.62 0.32 -8.94 16 26 C 0.13 4.54 6.53 86.50 0.57 5.10 16 27 C 0.05 1.75 5.27 86.54 0.46 2.21 16 28 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.10 0.73 8.07 -2.39 -0.02 0.71 16 30 H 0.06 1.04 7.42 -2.39 -0.02 1.03 16 31 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.09 0.41 8.07 -2.39 -0.02 0.39 16 33 H 0.08 0.58 6.44 -2.38 -0.02 0.57 16 34 H 0.07 1.40 7.38 -2.39 -0.02 1.38 16 35 H 0.13 1.95 7.93 -2.39 -0.02 1.93 16 36 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.11 2.45 7.99 -2.38 -0.02 2.43 16 38 H 0.06 2.54 7.06 -2.38 -0.02 2.52 16 39 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.05 2.22 7.92 -2.39 -0.02 2.21 16 41 H 0.10 5.01 5.85 -2.39 -0.01 5.00 16 42 H 0.24 13.74 8.32 -92.71 -0.77 12.97 16 43 H 0.12 4.33 8.14 -2.39 -0.02 4.31 16 44 H 0.08 3.27 6.14 -2.39 -0.01 3.26 16 45 H 0.12 3.60 8.14 -2.39 -0.02 3.58 16 46 H 0.10 3.57 8.14 -2.39 -0.02 3.55 16 47 H 0.05 2.56 8.14 -2.38 -0.02 2.54 16 48 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 49 H 0.08 2.89 6.02 -2.38 -0.01 2.88 16 50 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 51 H 0.09 3.03 5.76 -2.39 -0.01 3.02 16 Total: -1.00 -77.53 396.02 0.85 -76.67 By element: Atomic # 1 Polarization: 25.29 SS G_CDS: 0.92 Total: 26.21 kcal Atomic # 6 Polarization: 34.14 SS G_CDS: 8.66 Total: 42.80 kcal Atomic # 7 Polarization: -131.28 SS G_CDS: -10.67 Total: -141.95 kcal Atomic # 8 Polarization: -52.24 SS G_CDS: -0.09 Total: -52.33 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -77.53 0.85 -76.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355940217.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.648 kcal (2) G-P(sol) polarization free energy of solvation -77.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds