Wall clock time and date at job start Tue Mar 31 2020 21:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47381 * 2 1 4 4 N 1.46501 * 109.46669 * 240.00634 * 2 1 3 5 5 C 1.30176 * 119.99906 * 234.94056 * 4 2 1 6 6 N 1.37896 * 120.00110 * 4.94280 * 5 4 2 7 7 H 0.97006 * 119.99488 * 359.97438 * 6 5 4 8 8 C 1.37887 * 120.00254 * 179.97438 * 6 5 4 9 9 N 1.30170 * 120.00210 * 179.97438 * 8 6 5 10 10 C 1.46503 * 119.99996 * 185.70975 * 9 8 6 11 11 C 1.52996 * 109.46948 * 119.50146 * 10 9 8 12 12 O 1.42904 * 109.47452 * 65.00060 * 11 10 9 13 13 N 1.37899 * 119.99804 * 0.02562 * 8 6 5 14 14 H 0.97000 * 119.99800 * 179.97438 * 13 8 6 15 15 C 1.37894 * 120.00276 * 359.97438 * 13 8 6 16 16 N 1.30164 * 120.00178 * 180.02562 * 15 13 8 17 17 C 1.46498 * 119.99970 * 354.63200 * 16 15 13 18 18 C 1.52999 * 109.47370 * 114.54146 * 17 16 15 19 19 C 1.53005 * 109.46664 * 299.99645 * 18 17 16 20 20 C 1.52997 * 109.47557 * 59.99795 * 18 17 16 21 21 C 1.50698 * 109.47070 * 179.97438 * 18 17 16 22 22 H 1.08003 * 120.00198 * 3.33972 * 21 18 17 23 23 C 1.37881 * 119.99974 * 183.33679 * 21 18 17 24 24 N 1.31509 * 120.00106 * 189.59841 * 23 21 18 25 25 Si 1.86808 * 119.99861 * 9.60546 * 23 21 18 26 26 H 1.48504 * 109.46805 * 90.28733 * 25 23 21 27 27 H 1.48497 * 109.47130 * 210.28853 * 25 23 21 28 28 H 1.48497 * 109.46937 * 330.28668 * 25 23 21 29 29 N 1.37894 * 119.99797 * 184.65932 * 5 4 2 30 30 H 0.97001 * 120.00531 * 0.03141 * 29 5 4 31 31 H 1.08997 * 109.47536 * 59.99185 * 1 2 3 32 32 H 1.08995 * 109.47408 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47092 * 299.99331 * 1 2 3 34 34 H 1.08997 * 109.47536 * 120.00815 * 2 1 3 35 35 H 1.08997 * 109.47451 * 300.00867 * 3 2 1 36 36 H 1.09010 * 109.46453 * 60.00779 * 3 2 1 37 37 H 1.08999 * 109.47266 * 179.97438 * 3 2 1 38 38 H 1.09001 * 109.46848 * 239.50019 * 10 9 8 39 39 H 1.08999 * 109.47059 * 359.49852 * 10 9 8 40 40 H 1.09000 * 109.46781 * 184.99654 * 11 10 9 41 41 H 1.09000 * 109.47446 * 304.99667 * 11 10 9 42 42 H 0.96701 * 114.00137 * 179.97438 * 12 11 10 43 43 H 1.09008 * 109.47133 * 234.53579 * 17 16 15 44 44 H 1.08997 * 109.47198 * 354.53576 * 17 16 15 45 45 H 1.09000 * 109.47096 * 69.49803 * 19 18 17 46 46 H 1.09005 * 109.46690 * 189.49244 * 19 18 17 47 47 H 1.08997 * 109.46991 * 309.49024 * 19 18 17 48 48 H 1.08999 * 109.47166 * 59.99814 * 20 18 17 49 49 H 1.08997 * 109.47284 * 180.02562 * 20 18 17 50 50 H 1.09012 * 109.46911 * 300.00170 * 20 18 17 51 51 H 0.97004 * 119.99851 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0182 -0.6905 -1.1963 5 6 2.8457 -1.6886 -1.0795 6 7 3.1834 -2.1617 0.1710 7 1 2.8045 -1.7503 0.9636 8 6 4.0594 -3.2192 0.2947 9 7 4.3786 -3.6654 1.4751 10 6 5.4026 -4.7040 1.6135 11 6 6.5585 -4.1706 2.4621 12 8 6.0965 -3.9160 3.7902 13 7 4.5983 -3.8035 -0.8322 14 1 5.2149 -4.5473 -0.7452 15 6 4.2607 -3.3305 -2.0827 16 7 4.7690 -3.8824 -3.1464 17 6 5.7881 -4.9265 -3.0140 18 6 5.2320 -6.2515 -3.5394 19 6 3.9939 -6.6418 -2.7295 20 6 4.8496 -6.0959 -5.0126 21 6 6.2806 -7.3253 -3.4038 22 1 7.2273 -7.0996 -2.9357 23 6 6.0312 -8.5961 -3.8774 24 7 6.8599 -9.5774 -3.5950 25 14 4.5163 -8.9236 -4.9202 26 1 4.8512 -8.7301 -6.3540 27 1 4.0581 -10.3193 -4.7028 28 1 3.4356 -7.9818 -4.5327 29 7 3.3800 -2.2766 -2.2066 30 1 3.1397 -1.9463 -3.0864 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.8934 -0.5139 0.8899 35 1 1.6766 1.9564 -0.8899 36 1 1.6767 1.9562 0.8902 37 1 3.1300 1.4424 0.0005 38 1 4.9694 -5.5789 2.0982 39 1 5.7740 -4.9817 0.6270 40 1 7.3589 -4.9099 2.4914 41 1 6.9340 -3.2457 2.0244 42 1 6.7783 -3.5752 4.3853 43 1 6.6702 -4.6485 -3.5910 44 1 6.0605 -5.0374 -1.9645 45 1 3.1783 -5.9562 -2.9596 46 1 3.6972 -7.6586 -2.9867 47 1 4.2242 -6.5886 -1.6655 48 1 5.7316 -5.8178 -5.5895 49 1 4.4530 -7.0398 -5.3867 50 1 4.0913 -5.3190 -5.1111 51 1 6.6847 -10.4713 -3.9285 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413408854.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:38 Heat of formation + Delta-G solvation = 80.756503 kcal Electronic energy + Delta-G solvation = -30772.868797 eV Core-core repulsion = 26745.305384 eV Total energy + Delta-G solvation = -4027.563413 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.217 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.38437 -38.30582 -37.62090 -36.65939 -36.13568 -34.81929 -33.15637 -32.23599 -31.18431 -30.87296 -28.84262 -27.36673 -26.31762 -26.26664 -24.90105 -23.70210 -22.73794 -21.31038 -20.95319 -20.27478 -19.34656 -18.43399 -17.76838 -17.25880 -16.75669 -16.29375 -16.02653 -15.92444 -15.36631 -15.31546 -14.58900 -14.47560 -14.22670 -13.89901 -13.73273 -13.49037 -13.19712 -12.89965 -12.87211 -12.57066 -12.52948 -12.36701 -12.31524 -12.11746 -11.94322 -11.60878 -11.56547 -11.44844 -11.31691 -10.76523 -10.36653 -10.17357 -10.13763 -10.03938 -9.79320 -9.70144 -9.23691 -8.94944 -8.89410 -8.82943 -8.57711 -8.49518 -7.84666 -6.16521 -4.15886 1.76135 1.87861 1.99414 2.57041 2.84302 3.25744 3.26931 3.36550 3.39897 4.14689 4.34171 4.36202 4.49636 4.71220 4.95161 4.96260 4.99912 5.01536 5.10714 5.17002 5.32014 5.41337 5.42451 5.57008 5.58554 5.61783 5.66895 5.70879 5.85320 5.91091 5.91622 6.02275 6.08509 6.15736 6.32782 6.42272 6.54525 6.57607 6.59588 6.72257 6.83616 6.85766 6.92754 7.21917 7.27574 7.44591 7.52372 7.68862 7.71083 8.05168 8.30858 8.41578 8.84344 9.48026 10.96286 Molecular weight = 338.22amu Principal moments of inertia in cm(-1) A = 0.010519 B = 0.003550 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2661.150988 B = 7885.847678 C = 9849.572236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.092 3.908 3 C -0.141 4.141 4 N -0.608 5.608 5 C 0.617 3.383 6 N -0.664 5.664 7 H 0.439 0.561 8 C 0.594 3.406 9 N -0.600 5.600 10 C 0.067 3.933 11 C 0.086 3.914 12 O -0.559 6.559 13 N -0.707 5.707 14 H 0.438 0.562 15 C 0.574 3.426 16 N -0.574 5.574 17 C 0.093 3.907 18 C 0.043 3.957 19 C -0.138 4.138 20 C -0.135 4.135 21 C -0.517 4.517 22 H 0.073 0.927 23 C 0.075 3.925 24 N -0.896 5.896 25 Si 0.885 3.115 26 H -0.286 1.286 27 H -0.306 1.306 28 H -0.245 1.245 29 N -0.618 5.618 30 H 0.448 0.552 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.039 0.961 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.051 0.949 38 H 0.091 0.909 39 H 0.050 0.950 40 H 0.054 0.946 41 H 0.041 0.959 42 H 0.373 0.627 43 H 0.085 0.915 44 H 0.022 0.978 45 H 0.025 0.975 46 H 0.055 0.945 47 H 0.031 0.969 48 H 0.048 0.952 49 H 0.033 0.967 50 H 0.043 0.957 51 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.501 18.399 10.210 22.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.019 4.019 3 C -0.199 4.199 4 N -0.345 5.345 5 C 0.252 3.748 6 N -0.314 5.314 7 H 0.285 0.715 8 C 0.226 3.774 9 N -0.335 5.335 10 C -0.064 4.064 11 C 0.008 3.992 12 O -0.363 6.363 13 N -0.364 5.364 14 H 0.288 0.712 15 C 0.207 3.793 16 N -0.305 5.305 17 C -0.036 4.036 18 C 0.042 3.958 19 C -0.195 4.195 20 C -0.192 4.192 21 C -0.555 4.555 22 H 0.091 0.909 23 C -0.127 4.127 24 N -0.533 5.533 25 Si 0.718 3.282 26 H -0.214 1.214 27 H -0.235 1.235 28 H -0.171 1.171 29 N -0.262 5.262 30 H 0.292 0.708 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.057 0.943 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.109 0.891 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.060 0.940 42 H 0.218 0.782 43 H 0.103 0.897 44 H 0.040 0.960 45 H 0.045 0.955 46 H 0.074 0.926 47 H 0.050 0.950 48 H 0.067 0.933 49 H 0.051 0.949 50 H 0.062 0.938 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.599 18.515 9.291 22.065 hybrid contribution 0.688 -1.210 0.385 1.444 sum -6.910 17.305 9.676 20.996 Atomic orbital electron populations 1.21786 0.93690 1.02078 1.02150 1.21226 0.95974 0.94754 0.89995 1.21842 1.00910 0.94893 1.02222 1.72550 1.19362 1.12776 1.29826 1.18948 0.88532 0.88952 0.78409 1.42560 1.47370 1.32792 1.08654 0.71545 1.19242 0.87403 0.86651 0.84086 1.72514 1.22760 1.22347 1.15922 1.21783 0.91990 0.94780 0.97798 1.22160 0.94889 0.98739 0.83431 1.86594 1.40389 1.88156 1.21189 1.44223 1.50478 1.38296 1.03362 0.71213 1.18873 0.90218 0.88152 0.82082 1.72311 1.17847 1.17712 1.22653 1.21973 0.92815 0.90808 0.98005 1.18532 0.93879 0.91367 0.92020 1.22271 0.97818 1.00748 0.98699 1.22160 1.00061 0.98750 0.98221 1.20832 1.01344 0.93093 1.40200 0.90888 1.24968 0.96309 0.95820 0.95594 1.69919 1.37868 1.00936 1.44569 0.87292 0.84883 0.75399 0.80636 1.21418 1.23535 1.17084 1.40773 1.45339 1.32125 1.08002 0.70817 0.91625 0.92803 0.92096 0.94342 0.91596 0.92058 0.92935 0.89061 0.93242 0.92760 0.94029 0.78162 0.89724 0.95964 0.95548 0.92618 0.95006 0.93301 0.94915 0.93799 0.92606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.52 37.16 0.35 -0.78 16 2 C 0.09 0.82 3.51 -67.93 -0.24 0.59 16 3 C -0.14 -1.11 9.52 37.16 0.35 -0.76 16 4 N -0.61 -6.75 10.21 -55.08 -0.56 -7.32 16 5 C 0.62 7.20 8.51 -319.12 -2.72 4.49 16 6 N -0.66 -7.51 5.35 -13.71 -0.07 -7.59 16 7 H 0.44 4.35 6.15 -40.82 -0.25 4.10 16 8 C 0.59 7.80 8.51 -319.13 -2.72 5.08 16 9 N -0.60 -8.23 10.56 -61.59 -0.65 -8.88 16 10 C 0.07 0.86 6.70 -4.04 -0.03 0.84 16 11 C 0.09 0.95 7.39 37.16 0.27 1.22 16 12 O -0.56 -6.36 13.61 -35.23 -0.48 -6.84 16 13 N -0.71 -9.77 5.19 -13.71 -0.07 -9.84 16 14 H 0.44 6.30 3.46 -40.82 -0.14 6.16 16 15 C 0.57 8.29 8.50 -319.12 -2.71 5.58 16 16 N -0.57 -9.50 9.27 -61.59 -0.57 -10.07 16 17 C 0.09 1.73 5.08 -4.04 -0.02 1.71 16 18 C 0.04 0.95 0.57 -155.66 -0.09 0.86 16 19 C -0.14 -2.93 7.49 37.16 0.28 -2.65 16 20 C -0.14 -2.92 7.51 37.16 0.28 -2.64 16 21 C -0.52 -13.55 8.62 -34.44 -0.30 -13.85 16 22 H 0.07 2.05 7.99 -52.48 -0.42 1.63 16 23 C 0.08 2.09 5.38 -17.82 -0.10 1.99 16 24 N -0.90 -26.54 13.96 55.43 0.77 -25.76 16 25 Si 0.89 21.62 22.79 -169.99 -3.87 17.75 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 27 H -0.31 -7.64 7.11 56.52 0.40 -7.24 16 28 H -0.25 -5.61 4.45 56.52 0.25 -5.36 16 29 N -0.62 -7.57 5.49 -13.71 -0.08 -7.65 16 30 H 0.45 4.98 8.93 -40.82 -0.36 4.62 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.04 0.32 5.34 -51.93 -0.28 0.04 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 37 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 39 H 0.05 0.62 5.37 -51.93 -0.28 0.34 16 40 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.37 2.42 9.12 45.56 0.42 2.84 16 43 H 0.08 1.60 8.14 -51.92 -0.42 1.17 16 44 H 0.02 0.39 5.46 -51.93 -0.28 0.11 16 45 H 0.03 0.52 7.88 -51.93 -0.41 0.11 16 46 H 0.06 1.27 4.26 -51.93 -0.22 1.04 16 47 H 0.03 0.63 8.12 -51.93 -0.42 0.21 16 48 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 49 H 0.03 0.74 2.23 -51.93 -0.12 0.63 16 50 H 0.04 0.87 7.61 -51.92 -0.39 0.48 16 51 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 391.67 15.07 5.90 5.90 Total: -1.00 -31.34 391.67 -14.15 -45.49 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: -7.10 Total: 13.13 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: -7.37 Total: 1.68 kcal Atomic # 7 Polarization: -75.88 SS G_CDS: -1.23 Total: -77.11 kcal Atomic # 8 Polarization: -6.36 SS G_CDS: -0.48 Total: -6.84 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -3.87 Total: 17.75 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.34 -14.15 -45.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413408854.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.249 kcal (2) G-P(sol) polarization free energy of solvation -31.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds