Wall clock time and date at job start Tue Mar 31 2020 21:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47381 * 2 1 4 4 N 1.46501 * 109.46669 * 240.00634 * 2 1 3 5 5 C 1.30176 * 119.99906 * 234.94056 * 4 2 1 6 6 N 1.37896 * 120.00110 * 4.94280 * 5 4 2 7 7 H 0.97006 * 119.99488 * 359.97438 * 6 5 4 8 8 C 1.37887 * 120.00254 * 179.97438 * 6 5 4 9 9 N 1.30170 * 120.00210 * 179.97438 * 8 6 5 10 10 C 1.46503 * 119.99996 * 185.70975 * 9 8 6 11 11 C 1.52996 * 109.46948 * 119.50146 * 10 9 8 12 12 O 1.42904 * 109.47452 * 65.00060 * 11 10 9 13 13 N 1.37899 * 119.99804 * 0.02562 * 8 6 5 14 14 H 0.97000 * 119.99800 * 179.97438 * 13 8 6 15 15 C 1.37894 * 120.00276 * 359.97438 * 13 8 6 16 16 N 1.30164 * 120.00178 * 180.02562 * 15 13 8 17 17 C 1.46498 * 119.99970 * 354.63200 * 16 15 13 18 18 C 1.52999 * 109.47370 * 114.54146 * 17 16 15 19 19 C 1.53005 * 109.46664 * 299.99645 * 18 17 16 20 20 C 1.52997 * 109.47557 * 59.99795 * 18 17 16 21 21 C 1.50698 * 109.47070 * 179.97438 * 18 17 16 22 22 H 1.08003 * 120.00198 * 3.33972 * 21 18 17 23 23 C 1.37881 * 119.99974 * 183.33679 * 21 18 17 24 24 N 1.31509 * 120.00106 * 189.59841 * 23 21 18 25 25 Si 1.86808 * 119.99861 * 9.60546 * 23 21 18 26 26 H 1.48504 * 109.46805 * 90.28733 * 25 23 21 27 27 H 1.48497 * 109.47130 * 210.28853 * 25 23 21 28 28 H 1.48497 * 109.46937 * 330.28668 * 25 23 21 29 29 N 1.37894 * 119.99797 * 184.65932 * 5 4 2 30 30 H 0.97001 * 120.00531 * 0.03141 * 29 5 4 31 31 H 1.08997 * 109.47536 * 59.99185 * 1 2 3 32 32 H 1.08995 * 109.47408 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47092 * 299.99331 * 1 2 3 34 34 H 1.08997 * 109.47536 * 120.00815 * 2 1 3 35 35 H 1.08997 * 109.47451 * 300.00867 * 3 2 1 36 36 H 1.09010 * 109.46453 * 60.00779 * 3 2 1 37 37 H 1.08999 * 109.47266 * 179.97438 * 3 2 1 38 38 H 1.09001 * 109.46848 * 239.50019 * 10 9 8 39 39 H 1.08999 * 109.47059 * 359.49852 * 10 9 8 40 40 H 1.09000 * 109.46781 * 184.99654 * 11 10 9 41 41 H 1.09000 * 109.47446 * 304.99667 * 11 10 9 42 42 H 0.96701 * 114.00137 * 179.97438 * 12 11 10 43 43 H 1.09008 * 109.47133 * 234.53579 * 17 16 15 44 44 H 1.08997 * 109.47198 * 354.53576 * 17 16 15 45 45 H 1.09000 * 109.47096 * 69.49803 * 19 18 17 46 46 H 1.09005 * 109.46690 * 189.49244 * 19 18 17 47 47 H 1.08997 * 109.46991 * 309.49024 * 19 18 17 48 48 H 1.08999 * 109.47166 * 59.99814 * 20 18 17 49 49 H 1.08997 * 109.47284 * 180.02562 * 20 18 17 50 50 H 1.09012 * 109.46911 * 300.00170 * 20 18 17 51 51 H 0.97004 * 119.99851 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0182 -0.6905 -1.1963 5 6 2.8457 -1.6886 -1.0795 6 7 3.1834 -2.1617 0.1710 7 1 2.8045 -1.7503 0.9636 8 6 4.0594 -3.2192 0.2947 9 7 4.3786 -3.6654 1.4751 10 6 5.4026 -4.7040 1.6135 11 6 6.5585 -4.1706 2.4621 12 8 6.0965 -3.9160 3.7902 13 7 4.5983 -3.8035 -0.8322 14 1 5.2149 -4.5473 -0.7452 15 6 4.2607 -3.3305 -2.0827 16 7 4.7690 -3.8824 -3.1464 17 6 5.7881 -4.9265 -3.0140 18 6 5.2320 -6.2515 -3.5394 19 6 3.9939 -6.6418 -2.7295 20 6 4.8496 -6.0959 -5.0126 21 6 6.2806 -7.3253 -3.4038 22 1 7.2273 -7.0996 -2.9357 23 6 6.0312 -8.5961 -3.8774 24 7 6.8599 -9.5774 -3.5950 25 14 4.5163 -8.9236 -4.9202 26 1 4.8512 -8.7301 -6.3540 27 1 4.0581 -10.3193 -4.7028 28 1 3.4356 -7.9818 -4.5327 29 7 3.3800 -2.2766 -2.2066 30 1 3.1397 -1.9463 -3.0864 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.8934 -0.5139 0.8899 35 1 1.6766 1.9564 -0.8899 36 1 1.6767 1.9562 0.8902 37 1 3.1300 1.4424 0.0005 38 1 4.9694 -5.5789 2.0982 39 1 5.7740 -4.9817 0.6270 40 1 7.3589 -4.9099 2.4914 41 1 6.9340 -3.2457 2.0244 42 1 6.7783 -3.5752 4.3853 43 1 6.6702 -4.6485 -3.5910 44 1 6.0605 -5.0374 -1.9645 45 1 3.1783 -5.9562 -2.9596 46 1 3.6972 -7.6586 -2.9867 47 1 4.2242 -6.5886 -1.6655 48 1 5.7316 -5.8178 -5.5895 49 1 4.4530 -7.0398 -5.3867 50 1 4.0913 -5.3190 -5.1111 51 1 6.6847 -10.4713 -3.9285 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413408854.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:37 Heat of formation + Delta-G solvation = 60.840047 kcal Electronic energy + Delta-G solvation = -30773.732439 eV Core-core repulsion = 26745.305384 eV Total energy + Delta-G solvation = -4028.427055 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.217 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.42082 -39.42176 -38.71212 -37.80773 -37.22793 -35.83502 -34.29880 -33.87106 -32.65104 -31.77939 -29.79431 -28.01748 -27.99158 -27.68290 -26.90058 -24.63632 -23.79148 -22.39925 -21.96606 -21.21160 -20.73581 -19.66307 -18.69390 -18.29173 -18.01891 -17.68407 -17.45376 -17.04021 -16.90868 -16.27135 -15.55982 -15.47559 -15.20953 -15.05326 -15.00925 -14.77251 -14.68825 -14.48569 -14.05389 -13.85009 -13.76729 -13.60175 -13.42308 -13.05402 -12.96194 -12.89139 -12.51067 -12.44143 -12.30252 -12.25195 -12.14362 -12.00054 -11.76222 -11.13726 -11.00386 -10.86169 -10.64677 -10.53320 -10.47767 -10.25782 -9.86038 -9.76465 -8.98367 -8.30352 -6.31293 0.79758 0.86845 0.89981 1.32922 1.38055 1.46035 1.56428 1.77394 2.20523 2.33051 3.07619 3.32113 3.54615 3.58125 3.72616 3.99781 4.06062 4.16210 4.21179 4.24628 4.28009 4.33414 4.42563 4.47197 4.54911 4.62048 4.70188 4.81190 4.83935 4.84590 4.91393 4.96369 4.98580 5.01003 5.01387 5.08835 5.13668 5.20199 5.36016 5.38904 5.46929 5.47549 5.55863 5.71311 5.73954 5.92645 6.23122 6.32320 6.69569 6.73865 6.94090 6.99073 7.22305 7.35794 8.85802 Molecular weight = 338.22amu Principal moments of inertia in cm(-1) A = 0.010519 B = 0.003550 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2661.150988 B = 7885.847678 C = 9849.572236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.082 3.918 3 C -0.136 4.136 4 N -0.607 5.607 5 C 0.609 3.391 6 N -0.655 5.655 7 H 0.445 0.555 8 C 0.592 3.408 9 N -0.609 5.609 10 C 0.060 3.940 11 C 0.090 3.910 12 O -0.579 6.579 13 N -0.707 5.707 14 H 0.435 0.565 15 C 0.590 3.410 16 N -0.594 5.594 17 C 0.104 3.896 18 C 0.039 3.961 19 C -0.130 4.130 20 C -0.132 4.132 21 C -0.508 4.508 22 H 0.042 0.958 23 C 0.023 3.977 24 N -0.944 5.944 25 Si 0.935 3.065 26 H -0.286 1.286 27 H -0.316 1.316 28 H -0.218 1.218 29 N -0.612 5.612 30 H 0.454 0.546 31 H 0.060 0.940 32 H 0.044 0.956 33 H 0.081 0.919 34 H 0.048 0.952 35 H 0.061 0.939 36 H 0.081 0.919 37 H 0.045 0.955 38 H 0.082 0.918 39 H 0.049 0.951 40 H 0.070 0.930 41 H 0.045 0.955 42 H 0.393 0.607 43 H 0.076 0.924 44 H 0.027 0.973 45 H 0.041 0.959 46 H 0.039 0.961 47 H 0.036 0.964 48 H 0.046 0.954 49 H 0.022 0.978 50 H 0.063 0.937 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.326 20.735 10.885 24.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.028 4.028 3 C -0.194 4.194 4 N -0.343 5.343 5 C 0.243 3.757 6 N -0.306 5.306 7 H 0.292 0.708 8 C 0.224 3.776 9 N -0.344 5.344 10 C -0.071 4.071 11 C 0.012 3.988 12 O -0.386 6.386 13 N -0.363 5.363 14 H 0.284 0.716 15 C 0.222 3.778 16 N -0.326 5.326 17 C -0.026 4.026 18 C 0.037 3.963 19 C -0.187 4.187 20 C -0.189 4.189 21 C -0.546 4.546 22 H 0.060 0.940 23 C -0.175 4.175 24 N -0.584 5.584 25 Si 0.766 3.234 26 H -0.214 1.214 27 H -0.246 1.246 28 H -0.142 1.142 29 N -0.257 5.257 30 H 0.299 0.701 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.100 0.900 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.100 0.900 37 H 0.064 0.936 38 H 0.101 0.899 39 H 0.067 0.933 40 H 0.088 0.912 41 H 0.063 0.937 42 H 0.242 0.758 43 H 0.094 0.906 44 H 0.046 0.954 45 H 0.060 0.940 46 H 0.058 0.942 47 H 0.055 0.945 48 H 0.065 0.935 49 H 0.040 0.960 50 H 0.082 0.918 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.464 20.934 10.007 25.059 hybrid contribution 1.258 -1.773 0.327 2.198 sum -8.206 19.161 10.334 23.266 Atomic orbital electron populations 1.21769 0.92851 1.01718 1.02992 1.21454 0.96641 0.95255 0.89469 1.21814 1.00427 0.94123 1.03042 1.72552 1.18326 1.12070 1.31376 1.18937 0.89134 0.89383 0.78233 1.42525 1.46909 1.32239 1.08914 0.70751 1.19341 0.87599 0.86966 0.83657 1.72513 1.23115 1.22683 1.16104 1.21881 0.92496 0.94567 0.98167 1.22116 0.94291 0.99261 0.83175 1.86531 1.42023 1.88450 1.21627 1.44232 1.50414 1.38212 1.03481 0.71596 1.18982 0.89271 0.87663 0.81856 1.72284 1.18815 1.18356 1.23193 1.21626 0.93067 0.89941 0.97987 1.18511 0.92990 0.91830 0.92933 1.22132 0.97748 0.99972 0.98894 1.22103 1.00563 0.98720 0.97498 1.21151 1.01185 0.94146 1.38136 0.93974 1.25684 0.98981 0.95871 0.96959 1.70050 1.40210 1.01428 1.46731 0.86487 0.82820 0.75116 0.78974 1.21412 1.24575 1.14191 1.40739 1.44806 1.31455 1.08661 0.70141 0.92054 0.93725 0.90050 0.93433 0.92020 0.90049 0.93623 0.89943 0.93316 0.91223 0.93689 0.75813 0.90592 0.95444 0.94013 0.94187 0.94490 0.93515 0.95992 0.91791 0.92818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.52 71.98 0.69 -1.17 16 2 C 0.08 1.27 3.51 44.99 0.16 1.43 16 3 C -0.14 -1.80 9.52 71.98 0.69 -1.11 16 4 N -0.61 -12.09 10.21 -328.19 -3.35 -15.44 16 5 C 0.61 12.87 8.51 260.20 2.21 15.08 16 6 N -0.66 -13.47 5.35 -197.28 -1.06 -14.53 16 7 H 0.45 7.82 6.15 -92.70 -0.57 7.25 16 8 C 0.59 14.57 8.51 260.20 2.21 16.78 16 9 N -0.61 -15.88 10.56 -348.76 -3.68 -19.56 16 10 C 0.06 1.48 6.70 86.38 0.58 2.06 16 11 C 0.09 1.86 7.39 71.98 0.53 2.39 16 12 O -0.58 -12.31 13.61 -148.98 -2.03 -14.34 16 13 N -0.71 -18.51 5.19 -197.29 -1.02 -19.53 16 14 H 0.44 12.07 3.46 -92.71 -0.32 11.74 16 15 C 0.59 15.92 8.50 260.20 2.21 18.13 16 16 N -0.59 -18.59 9.27 -348.76 -3.23 -21.82 16 17 C 0.10 3.77 5.08 86.38 0.44 4.21 16 18 C 0.04 1.66 0.57 -52.93 -0.03 1.63 16 19 C -0.13 -5.30 7.49 71.98 0.54 -4.76 16 20 C -0.13 -5.47 7.51 71.98 0.54 -4.93 16 21 C -0.51 -26.99 8.62 25.60 0.22 -26.77 16 22 H 0.04 2.44 7.99 -2.91 -0.02 2.42 16 23 C 0.02 1.27 5.38 84.66 0.46 1.72 16 24 N -0.94 -57.57 13.96 21.45 0.30 -57.27 16 25 Si 0.93 44.58 22.79 68.60 1.56 46.15 16 26 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 27 H -0.32 -15.45 7.11 99.48 0.71 -14.74 16 28 H -0.22 -9.37 4.45 99.48 0.44 -8.93 16 29 N -0.61 -13.68 5.49 -197.28 -1.08 -14.76 16 30 H 0.45 9.08 8.93 -92.71 -0.83 8.25 16 31 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 34 H 0.05 0.66 5.34 -2.39 -0.01 0.65 16 35 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 37 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.05 1.20 5.37 -2.39 -0.01 1.19 16 40 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.39 4.44 9.12 -74.06 -0.68 3.76 16 43 H 0.08 2.85 8.14 -2.38 -0.02 2.83 16 44 H 0.03 0.95 5.46 -2.39 -0.01 0.94 16 45 H 0.04 1.56 7.88 -2.39 -0.02 1.54 16 46 H 0.04 1.74 4.26 -2.38 -0.01 1.73 16 47 H 0.04 1.43 8.12 -2.39 -0.02 1.41 16 48 H 0.05 1.91 8.14 -2.39 -0.02 1.90 16 49 H 0.02 0.95 2.23 -2.39 -0.01 0.94 16 50 H 0.06 2.38 7.61 -2.38 -0.02 2.37 16 51 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -66.94 391.67 -3.81 -70.75 By element: Atomic # 1 Polarization: 37.32 SS G_CDS: -1.66 Total: 35.67 kcal Atomic # 6 Polarization: 13.26 SS G_CDS: 11.44 Total: 24.70 kcal Atomic # 7 Polarization: -149.79 SS G_CDS: -13.13 Total: -162.93 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: -2.03 Total: -14.34 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.56 Total: 46.15 kcal Total: -66.94 -3.81 -70.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413408854.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.589 kcal (2) G-P(sol) polarization free energy of solvation -66.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds