Wall clock time and date at job start Tue Mar 31 2020 20:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46501 * 119.99954 * 2 1 4 4 C 1.34779 * 120.00043 * 180.02562 * 2 1 3 5 5 O 1.21593 * 120.00023 * 0.02562 * 4 2 1 6 6 N 1.34766 * 120.00128 * 180.02562 * 4 2 1 7 7 C 1.46503 * 120.00316 * 180.02562 * 6 4 2 8 8 H 1.09005 * 109.49613 * 324.93371 * 7 6 4 9 9 C 1.53040 * 109.52416 * 204.85337 * 7 6 4 10 10 C 1.53044 * 109.53888 * 178.66356 * 9 7 6 11 11 C 1.52760 * 109.38288 * 61.23912 * 10 9 7 12 12 N 1.46931 * 109.00893 * 305.59249 * 11 10 9 13 13 C 1.34771 * 120.62965 * 233.57936 * 12 11 10 14 14 O 1.21586 * 120.00256 * 174.51226 * 13 12 11 15 15 N 1.34785 * 120.00098 * 354.79714 * 13 12 11 16 16 C 1.46499 * 120.00093 * 184.84715 * 15 13 12 17 17 C 1.52995 * 109.47236 * 184.99608 * 16 15 13 18 18 C 1.50704 * 115.55230 * 275.39332 * 17 16 15 19 19 H 1.08001 * 120.00038 * 116.16991 * 18 17 16 20 20 C 1.37872 * 119.99562 * 296.17118 * 18 17 16 21 21 N 1.31519 * 120.00421 * 352.92514 * 20 18 17 22 22 Si 1.86802 * 119.99894 * 172.92583 * 20 18 17 23 23 H 1.48503 * 109.46978 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47235 * 119.99772 * 22 20 18 25 25 H 1.48504 * 109.47129 * 239.99895 * 22 20 18 26 26 C 1.52994 * 117.49915 * 129.67949 * 17 16 15 27 27 C 1.52995 * 60.00445 * 252.51266 * 26 17 16 28 28 C 1.46929 * 118.74054 * 53.30354 * 12 11 10 29 29 H 1.08996 * 109.47076 * 269.99685 * 1 2 3 30 30 H 1.08996 * 109.46923 * 29.99946 * 1 2 3 31 31 H 1.09008 * 109.46677 * 149.99594 * 1 2 3 32 32 H 1.08996 * 109.46963 * 270.00402 * 3 2 1 33 33 H 1.09001 * 109.46631 * 30.00089 * 3 2 1 34 34 H 1.09000 * 109.46584 * 150.00305 * 3 2 1 35 35 H 0.96999 * 120.00303 * 359.97438 * 6 4 2 36 36 H 1.09001 * 109.46220 * 298.68779 * 9 7 6 37 37 H 1.09003 * 109.46238 * 58.64889 * 9 7 6 38 38 H 1.08996 * 109.49759 * 181.31839 * 10 9 7 39 39 H 1.09000 * 109.49853 * 301.38387 * 10 9 7 40 40 H 1.09000 * 109.51125 * 185.71078 * 11 10 9 41 41 H 1.09006 * 109.43073 * 65.42335 * 11 10 9 42 42 H 0.96998 * 119.99688 * 4.83958 * 15 13 12 43 43 H 1.09000 * 109.47270 * 305.00138 * 16 15 13 44 44 H 1.09000 * 109.46861 * 64.99872 * 16 15 13 45 45 H 0.96995 * 120.00116 * 185.01155 * 21 20 18 46 46 H 1.08999 * 117.49889 * 0.02562 * 26 17 16 47 47 H 1.08999 * 117.49813 * 145.02234 * 26 17 16 48 48 H 1.08996 * 117.50005 * 252.51233 * 27 26 17 49 49 H 1.09000 * 117.49812 * 107.48703 * 27 26 17 50 50 H 1.09005 * 109.58006 * 66.43461 * 28 12 11 51 51 H 1.08995 * 109.58483 * 186.71281 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5310 -2.2202 -0.0015 6 7 3.4866 -1.1672 0.0000 7 6 4.2192 -2.4360 -0.0011 8 1 3.6725 -3.1722 0.5882 9 6 5.6081 -2.2251 0.6059 10 6 6.3614 -3.5570 0.6354 11 6 6.5305 -4.0756 -0.7915 12 7 5.2118 -4.1417 -1.4361 13 6 4.7837 -5.2845 -2.0079 14 8 3.6532 -5.3570 -2.4496 15 7 5.6067 -6.3491 -2.0850 16 6 5.1800 -7.5547 -2.7997 17 6 6.2373 -8.6478 -2.6324 18 6 7.3868 -8.5947 -3.6056 19 1 8.3899 -8.4165 -3.2472 20 6 7.1577 -8.7736 -4.9533 21 7 5.9638 -9.1277 -5.3762 22 14 8.5433 -8.5130 -6.1788 23 1 9.7784 -8.1208 -5.4535 24 1 8.7865 -9.7729 -6.9263 25 1 8.1663 -7.4375 -7.1309 26 6 5.7603 -10.0281 -2.1765 27 6 6.5364 -9.1298 -1.2114 28 6 4.3663 -2.9401 -1.4401 29 1 -0.3633 -0.0001 1.0276 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5139 32 1 2.3791 1.5834 -1.0276 33 1 1.6084 2.0283 0.5139 34 1 3.1499 1.1383 0.5138 35 1 3.9716 -0.3272 0.0004 36 1 6.1632 -1.5073 0.0020 37 1 5.5064 -1.8430 1.6217 38 1 7.3415 -3.4107 1.0892 39 1 5.7948 -4.2825 1.2192 40 1 6.9756 -5.0702 -0.7670 41 1 7.1764 -3.3975 -1.3495 42 1 6.4816 -6.3170 -1.6674 43 1 4.2306 -7.9019 -2.3920 44 1 5.0586 -7.3256 -3.8584 45 1 5.8204 -9.3242 -6.3152 46 1 4.6931 -10.1576 -1.9961 47 1 6.2777 -10.8982 -2.5806 48 1 7.5645 -9.4088 -0.9806 49 1 5.9799 -8.6681 -0.3958 50 1 4.8321 -2.1677 -2.0522 51 1 3.3849 -3.1854 -1.8459 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000454895823.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:55 Heat of formation + Delta-G solvation = -16.643044 kcal Electronic energy + Delta-G solvation = -30416.557634 eV Core-core repulsion = 26352.477908 eV Total energy + Delta-G solvation = -4064.079726 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.62920 -39.73299 -37.68752 -36.56643 -35.67863 -34.68357 -33.15039 -32.18994 -32.02072 -30.03242 -28.17077 -26.59341 -26.01740 -25.46508 -24.31908 -22.98755 -21.32983 -20.98929 -20.25650 -19.33328 -19.06449 -18.24260 -17.82853 -16.66959 -16.28886 -16.02147 -15.61455 -15.23365 -14.86079 -14.68471 -14.42374 -14.37177 -14.04091 -13.95504 -13.65438 -13.34616 -13.19067 -13.04021 -12.95312 -12.91337 -12.83007 -12.48200 -12.24292 -11.73204 -11.67422 -11.47186 -11.19703 -11.14173 -10.97478 -10.86906 -10.70116 -10.49342 -10.27818 -10.26381 -9.64121 -9.47041 -9.35433 -8.99561 -8.90618 -8.58301 -8.42704 -8.18112 -7.87440 -6.05256 -4.12109 2.34381 2.99929 3.12937 3.26926 3.35912 3.37618 3.67171 3.82073 4.37150 4.43584 4.55513 4.60103 4.68423 4.77605 4.87160 4.96268 5.01116 5.16557 5.18465 5.21194 5.30611 5.32145 5.38887 5.45889 5.58168 5.62475 5.69685 5.76066 5.84272 6.01882 6.05195 6.07337 6.15162 6.30230 6.35676 6.52732 6.61292 6.65902 6.74048 6.76851 6.96402 7.08565 7.36452 7.39964 7.55937 7.61114 7.68393 7.87610 8.37948 8.41809 8.64006 8.87823 9.26062 9.52558 11.02447 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.017173 B = 0.002491 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.082075 B =11237.688983 C =11354.795136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.641 5.641 3 C 0.081 3.919 4 C 0.702 3.298 5 O -0.576 6.576 6 N -0.739 5.739 7 C 0.148 3.852 8 H 0.093 0.907 9 C -0.123 4.123 10 C -0.130 4.130 11 C 0.109 3.891 12 N -0.633 5.633 13 C 0.701 3.299 14 O -0.592 6.592 15 N -0.726 5.726 16 C 0.179 3.821 17 C 0.036 3.964 18 C -0.498 4.498 19 H 0.061 0.939 20 C 0.072 3.928 21 N -0.873 5.873 22 Si 0.891 3.109 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.283 1.283 26 C -0.166 4.166 27 C -0.208 4.208 28 C 0.123 3.877 29 H 0.051 0.949 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.394 0.606 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.085 0.915 41 H 0.067 0.933 42 H 0.392 0.608 43 H 0.039 0.961 44 H 0.079 0.921 45 H 0.262 0.738 46 H 0.066 0.934 47 H 0.081 0.919 48 H 0.077 0.923 49 H 0.067 0.933 50 H 0.059 0.941 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.417 22.261 13.698 26.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.380 5.380 3 C -0.063 4.063 4 C 0.403 3.597 5 O -0.452 6.452 6 N -0.395 5.395 7 C 0.042 3.958 8 H 0.111 0.889 9 C -0.162 4.162 10 C -0.170 4.170 11 C -0.015 4.015 12 N -0.372 5.372 13 C 0.403 3.597 14 O -0.471 6.471 15 N -0.380 5.380 16 C 0.056 3.944 17 C 0.035 3.965 18 C -0.536 4.536 19 H 0.079 0.921 20 C -0.132 4.132 21 N -0.509 5.509 22 Si 0.718 3.282 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.209 1.209 26 C -0.205 4.205 27 C -0.246 4.246 28 C -0.002 4.002 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.230 0.770 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.103 0.897 41 H 0.085 0.915 42 H 0.228 0.772 43 H 0.057 0.943 44 H 0.097 0.903 45 H 0.072 0.928 46 H 0.084 0.916 47 H 0.100 0.900 48 H 0.095 0.905 49 H 0.085 0.915 50 H 0.077 0.923 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.850 21.386 13.131 25.257 hybrid contribution 1.412 0.621 -0.527 1.631 sum -1.437 22.007 12.603 25.401 Atomic orbital electron populations 1.21511 0.77718 1.03174 1.01593 1.46918 1.07138 1.04767 1.79168 1.21712 0.96947 0.85873 1.01786 1.15915 0.81952 0.83894 0.77968 1.91004 1.67522 1.29760 1.56918 1.45227 1.04636 1.09377 1.80303 1.21230 0.91979 0.85159 0.97460 0.88872 1.21783 0.94663 0.98459 1.01264 1.21817 1.01023 0.96711 0.97399 1.21541 0.84972 1.02313 0.92636 1.47147 1.18011 1.10812 1.61267 1.15950 0.84636 0.80035 0.79103 1.90895 1.18569 1.82804 1.54785 1.45470 1.19047 1.14734 1.58780 1.20896 0.94996 0.81923 0.96544 1.19088 0.95796 0.90901 0.90734 1.20462 0.92144 1.50654 0.90315 0.92101 1.24995 0.95408 0.94543 0.98300 1.69971 1.21036 1.44186 1.15738 0.86567 0.82289 0.77908 0.81403 1.19754 1.21036 1.20929 1.22721 0.97211 0.96729 1.03820 1.22871 0.99770 1.07779 0.94143 1.21688 0.97116 0.85925 0.95467 0.93085 0.91403 0.90251 0.92561 0.90784 0.91603 0.77005 0.91209 0.91155 0.90041 0.90997 0.89687 0.91451 0.77235 0.94300 0.90274 0.92801 0.91590 0.90029 0.90457 0.91462 0.92325 0.88326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.84 10.44 59.85 0.62 1.46 16 2 N -0.64 -5.88 3.27 -195.34 -0.64 -6.52 16 3 C 0.08 0.38 10.20 59.85 0.61 0.99 16 4 C 0.70 8.96 8.25 -86.93 -0.72 8.24 16 5 O -0.58 -10.35 15.59 5.28 0.08 -10.26 16 6 N -0.74 -7.26 4.95 -58.56 -0.29 -7.54 16 7 C 0.15 1.70 2.60 -67.81 -0.18 1.53 16 8 H 0.09 1.37 7.58 -51.93 -0.39 0.98 16 9 C -0.12 -0.98 5.36 -26.69 -0.14 -1.12 16 10 C -0.13 -1.14 6.06 -26.83 -0.16 -1.30 16 11 C 0.11 1.24 6.36 -3.93 -0.02 1.22 16 12 N -0.63 -9.95 2.98 -178.76 -0.53 -10.48 16 13 C 0.70 14.63 8.29 -86.92 -0.72 13.91 16 14 O -0.59 -15.01 15.74 5.29 0.08 -14.93 16 15 N -0.73 -14.94 5.37 -65.23 -0.35 -15.29 16 16 C 0.18 4.36 5.51 -4.05 -0.02 4.34 16 17 C 0.04 0.86 1.35 -155.66 -0.21 0.65 16 18 C -0.50 -13.06 8.84 -34.44 -0.30 -13.36 16 19 H 0.06 1.57 7.82 -52.49 -0.41 1.16 16 20 C 0.07 1.93 5.22 -17.82 -0.09 1.84 16 21 N -0.87 -24.75 12.44 55.43 0.69 -24.06 16 22 Si 0.89 20.82 29.55 -169.99 -5.02 15.80 16 23 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 C -0.17 -3.84 9.88 -26.74 -0.26 -4.10 16 27 C -0.21 -4.33 9.77 -26.73 -0.26 -4.59 16 28 C 0.12 1.78 6.02 -3.71 -0.02 1.76 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.36 8.07 -51.93 -0.42 -0.06 16 31 H 0.08 0.83 7.42 -51.92 -0.39 0.44 16 32 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.07 0.23 8.07 -51.93 -0.42 -0.19 16 34 H 0.07 0.22 6.36 -51.93 -0.33 -0.11 16 35 H 0.39 2.51 6.33 -40.82 -0.26 2.26 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.08 0.99 5.65 -51.93 -0.29 0.70 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.39 7.11 5.89 -40.82 -0.24 6.87 16 43 H 0.04 0.98 7.86 -51.93 -0.41 0.57 16 44 H 0.08 2.21 7.11 -51.93 -0.37 1.84 16 45 H 0.26 7.12 8.32 -40.82 -0.34 6.78 16 46 H 0.07 1.47 8.05 -51.93 -0.42 1.05 16 47 H 0.08 1.94 8.14 -51.93 -0.42 1.52 16 48 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 49 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 50 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 51 H 0.10 1.85 6.99 -51.93 -0.36 1.48 16 LS Contribution 406.46 15.07 6.13 6.13 Total: -1.00 -35.72 406.46 -10.24 -45.95 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -8.49 Total: 9.75 kcal Atomic # 6 Polarization: 13.35 SS G_CDS: -1.89 Total: 11.46 kcal Atomic # 7 Polarization: -62.77 SS G_CDS: -1.12 Total: -63.89 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: 0.17 Total: -25.20 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.72 -10.24 -45.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454895823.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.310 kcal (2) G-P(sol) polarization free energy of solvation -35.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds