Wall clock time and date at job start Tue Mar 31 2020 20:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46501 * 119.99954 * 2 1 4 4 C 1.34779 * 120.00043 * 180.02562 * 2 1 3 5 5 O 1.21593 * 120.00023 * 0.02562 * 4 2 1 6 6 N 1.34766 * 120.00128 * 180.02562 * 4 2 1 7 7 C 1.46503 * 120.00316 * 180.02562 * 6 4 2 8 8 H 1.09005 * 109.49613 * 324.93371 * 7 6 4 9 9 C 1.53040 * 109.52416 * 204.85337 * 7 6 4 10 10 C 1.53044 * 109.53888 * 178.66356 * 9 7 6 11 11 C 1.52760 * 109.38288 * 61.23912 * 10 9 7 12 12 N 1.46931 * 109.00893 * 305.59249 * 11 10 9 13 13 C 1.34771 * 120.62965 * 233.57936 * 12 11 10 14 14 O 1.21586 * 120.00256 * 174.51226 * 13 12 11 15 15 N 1.34785 * 120.00098 * 354.79714 * 13 12 11 16 16 C 1.46499 * 120.00093 * 184.84715 * 15 13 12 17 17 C 1.52995 * 109.47236 * 184.99608 * 16 15 13 18 18 C 1.50704 * 115.55230 * 275.39332 * 17 16 15 19 19 H 1.08001 * 120.00038 * 116.16991 * 18 17 16 20 20 C 1.37872 * 119.99562 * 296.17118 * 18 17 16 21 21 N 1.31519 * 120.00421 * 352.92514 * 20 18 17 22 22 Si 1.86802 * 119.99894 * 172.92583 * 20 18 17 23 23 H 1.48503 * 109.46978 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47235 * 119.99772 * 22 20 18 25 25 H 1.48504 * 109.47129 * 239.99895 * 22 20 18 26 26 C 1.52994 * 117.49915 * 129.67949 * 17 16 15 27 27 C 1.52995 * 60.00445 * 252.51266 * 26 17 16 28 28 C 1.46929 * 118.74054 * 53.30354 * 12 11 10 29 29 H 1.08996 * 109.47076 * 269.99685 * 1 2 3 30 30 H 1.08996 * 109.46923 * 29.99946 * 1 2 3 31 31 H 1.09008 * 109.46677 * 149.99594 * 1 2 3 32 32 H 1.08996 * 109.46963 * 270.00402 * 3 2 1 33 33 H 1.09001 * 109.46631 * 30.00089 * 3 2 1 34 34 H 1.09000 * 109.46584 * 150.00305 * 3 2 1 35 35 H 0.96999 * 120.00303 * 359.97438 * 6 4 2 36 36 H 1.09001 * 109.46220 * 298.68779 * 9 7 6 37 37 H 1.09003 * 109.46238 * 58.64889 * 9 7 6 38 38 H 1.08996 * 109.49759 * 181.31839 * 10 9 7 39 39 H 1.09000 * 109.49853 * 301.38387 * 10 9 7 40 40 H 1.09000 * 109.51125 * 185.71078 * 11 10 9 41 41 H 1.09006 * 109.43073 * 65.42335 * 11 10 9 42 42 H 0.96998 * 119.99688 * 4.83958 * 15 13 12 43 43 H 1.09000 * 109.47270 * 305.00138 * 16 15 13 44 44 H 1.09000 * 109.46861 * 64.99872 * 16 15 13 45 45 H 0.96995 * 120.00116 * 185.01155 * 21 20 18 46 46 H 1.08999 * 117.49889 * 0.02562 * 26 17 16 47 47 H 1.08999 * 117.49813 * 145.02234 * 26 17 16 48 48 H 1.08996 * 117.50005 * 252.51233 * 27 26 17 49 49 H 1.09000 * 117.49812 * 107.48703 * 27 26 17 50 50 H 1.09005 * 109.58006 * 66.43461 * 28 12 11 51 51 H 1.08995 * 109.58483 * 186.71281 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5310 -2.2202 -0.0015 6 7 3.4866 -1.1672 0.0000 7 6 4.2192 -2.4360 -0.0011 8 1 3.6725 -3.1722 0.5882 9 6 5.6081 -2.2251 0.6059 10 6 6.3614 -3.5570 0.6354 11 6 6.5305 -4.0756 -0.7915 12 7 5.2118 -4.1417 -1.4361 13 6 4.7837 -5.2845 -2.0079 14 8 3.6532 -5.3570 -2.4496 15 7 5.6067 -6.3491 -2.0850 16 6 5.1800 -7.5547 -2.7997 17 6 6.2373 -8.6478 -2.6324 18 6 7.3868 -8.5947 -3.6056 19 1 8.3899 -8.4165 -3.2472 20 6 7.1577 -8.7736 -4.9533 21 7 5.9638 -9.1277 -5.3762 22 14 8.5433 -8.5130 -6.1788 23 1 9.7784 -8.1208 -5.4535 24 1 8.7865 -9.7729 -6.9263 25 1 8.1663 -7.4375 -7.1309 26 6 5.7603 -10.0281 -2.1765 27 6 6.5364 -9.1298 -1.2114 28 6 4.3663 -2.9401 -1.4401 29 1 -0.3633 -0.0001 1.0276 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5139 32 1 2.3791 1.5834 -1.0276 33 1 1.6084 2.0283 0.5139 34 1 3.1499 1.1383 0.5138 35 1 3.9716 -0.3272 0.0004 36 1 6.1632 -1.5073 0.0020 37 1 5.5064 -1.8430 1.6217 38 1 7.3415 -3.4107 1.0892 39 1 5.7948 -4.2825 1.2192 40 1 6.9756 -5.0702 -0.7670 41 1 7.1764 -3.3975 -1.3495 42 1 6.4816 -6.3170 -1.6674 43 1 4.2306 -7.9019 -2.3920 44 1 5.0586 -7.3256 -3.8584 45 1 5.8204 -9.3242 -6.3152 46 1 4.6931 -10.1576 -1.9961 47 1 6.2777 -10.8982 -2.5806 48 1 7.5645 -9.4088 -0.9806 49 1 5.9799 -8.6681 -0.3958 50 1 4.8321 -2.1677 -2.0522 51 1 3.3849 -3.1854 -1.8459 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000454895823.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:54 Heat of formation + Delta-G solvation = -42.403822 kcal Electronic energy + Delta-G solvation = -30417.674705 eV Core-core repulsion = 26352.477908 eV Total energy + Delta-G solvation = -4065.196797 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.71813 -41.03149 -39.04116 -38.25654 -36.54993 -35.85466 -34.82659 -34.05300 -33.20992 -31.02987 -28.76249 -28.24882 -27.31006 -26.74240 -25.74792 -23.90842 -23.04042 -22.14591 -21.22860 -21.19406 -20.46611 -19.28159 -19.01760 -18.01279 -17.57717 -17.25814 -16.89924 -16.70883 -16.44681 -15.75017 -15.68057 -15.67325 -15.35702 -15.05408 -15.00033 -14.54944 -14.38970 -14.27422 -14.05398 -13.71755 -13.60026 -13.44586 -13.43545 -13.36671 -12.93980 -12.90088 -12.82155 -12.58578 -12.31045 -12.09886 -12.01561 -11.97495 -11.63610 -11.47628 -11.36030 -11.16545 -10.94739 -10.53617 -10.49162 -10.11406 -10.03228 -9.62684 -9.32621 -8.10099 -6.22169 1.41494 1.44248 1.44922 1.54805 1.80876 2.06493 2.17973 2.42538 2.92901 3.06621 3.17179 3.55145 3.69990 3.84058 3.95029 4.07474 4.19158 4.22771 4.26408 4.35163 4.49163 4.53388 4.54520 4.55940 4.64949 4.74946 4.76764 4.77484 4.80236 4.87812 4.91600 4.93507 4.95450 5.01650 5.09055 5.15341 5.24065 5.27757 5.41602 5.48269 5.55876 5.56912 5.63913 5.71265 5.82297 5.87960 5.98229 6.36452 6.83360 6.91894 7.09320 7.45683 7.51757 7.62620 8.97752 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.017173 B = 0.002491 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.082075 B =11237.688983 C =11354.795136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.639 5.639 3 C 0.073 3.927 4 C 0.690 3.310 5 O -0.641 6.641 6 N -0.720 5.720 7 C 0.158 3.842 8 H 0.053 0.947 9 C -0.112 4.112 10 C -0.124 4.124 11 C 0.099 3.901 12 N -0.624 5.624 13 C 0.693 3.307 14 O -0.649 6.649 15 N -0.715 5.715 16 C 0.199 3.801 17 C 0.011 3.989 18 C -0.502 4.502 19 H 0.067 0.933 20 C 0.020 3.980 21 N -0.910 5.910 22 Si 0.953 3.047 23 H -0.257 1.257 24 H -0.284 1.284 25 H -0.289 1.289 26 C -0.178 4.178 27 C -0.169 4.169 28 C 0.124 3.876 29 H 0.058 0.942 30 H 0.101 0.899 31 H 0.045 0.955 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.416 0.584 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.120 0.880 39 H 0.054 0.946 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.406 0.594 43 H 0.019 0.981 44 H 0.035 0.965 45 H 0.259 0.741 46 H 0.065 0.935 47 H 0.071 0.929 48 H 0.094 0.906 49 H 0.086 0.914 50 H 0.085 0.915 51 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.977 25.507 15.724 30.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.376 5.376 3 C -0.069 4.069 4 C 0.391 3.609 5 O -0.522 6.522 6 N -0.378 5.378 7 C 0.050 3.950 8 H 0.071 0.929 9 C -0.150 4.150 10 C -0.163 4.163 11 C -0.023 4.023 12 N -0.362 5.362 13 C 0.394 3.606 14 O -0.532 6.532 15 N -0.372 5.372 16 C 0.074 3.926 17 C 0.010 3.990 18 C -0.539 4.539 19 H 0.085 0.915 20 C -0.181 4.181 21 N -0.548 5.548 22 Si 0.779 3.221 23 H -0.181 1.181 24 H -0.210 1.210 25 H -0.216 1.216 26 C -0.217 4.217 27 C -0.206 4.206 28 C -0.001 4.001 29 H 0.076 0.924 30 H 0.120 0.880 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.115 0.885 34 H 0.102 0.898 35 H 0.255 0.745 36 H 0.118 0.882 37 H 0.112 0.888 38 H 0.138 0.862 39 H 0.073 0.927 40 H 0.100 0.900 41 H 0.113 0.887 42 H 0.245 0.755 43 H 0.037 0.963 44 H 0.053 0.947 45 H 0.068 0.932 46 H 0.084 0.916 47 H 0.089 0.911 48 H 0.113 0.887 49 H 0.105 0.895 50 H 0.103 0.897 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.637 24.748 15.217 29.059 hybrid contribution 0.299 -0.306 -1.131 1.209 sum 0.936 24.442 14.086 28.226 Atomic orbital electron populations 1.21606 0.77493 1.03157 1.02101 1.47073 1.07624 1.05228 1.77683 1.22037 0.97710 0.83999 1.03134 1.16303 0.82754 0.84073 0.77808 1.90964 1.68957 1.32514 1.59763 1.44964 1.03691 1.09793 1.79357 1.21026 0.94119 0.85017 0.94794 0.92905 1.21778 0.91640 0.98809 1.02749 1.21825 1.02913 0.96502 0.95069 1.21965 0.82562 1.03211 0.94540 1.47196 1.19740 1.09219 1.60030 1.16221 0.83894 0.81272 0.79179 1.90855 1.21085 1.83995 1.57215 1.45163 1.19622 1.13827 1.58555 1.20379 0.94619 0.83449 0.94137 1.19054 0.95684 0.91148 0.93116 1.20778 0.92830 1.49532 0.90787 0.91463 1.25776 0.97459 0.94538 1.00285 1.70115 1.23097 1.45797 1.15771 0.85575 0.80057 0.77399 0.79031 1.18072 1.20959 1.21594 1.22691 0.97583 0.96066 1.05349 1.22879 1.00414 1.04627 0.92659 1.21761 0.94571 0.85837 0.97964 0.92353 0.88007 0.93599 0.91506 0.88469 0.89814 0.74457 0.88166 0.88842 0.86156 0.92691 0.90016 0.88683 0.75521 0.96278 0.94696 0.93194 0.91646 0.91053 0.88749 0.89546 0.89652 0.93723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.60 10.44 127.77 1.33 2.93 16 2 N -0.64 -11.11 3.27 -890.18 -2.91 -14.02 16 3 C 0.07 0.45 10.20 127.77 1.30 1.75 16 4 C 0.69 17.95 8.25 179.06 1.48 19.43 16 5 O -0.64 -24.94 15.59 -4.01 -0.06 -25.01 16 6 N -0.72 -13.19 4.95 -457.44 -2.26 -15.46 16 7 C 0.16 3.51 2.60 45.07 0.12 3.62 16 8 H 0.05 1.63 7.58 -2.38 -0.02 1.62 16 9 C -0.11 -1.31 5.36 30.62 0.16 -1.15 16 10 C -0.12 -1.69 6.06 30.53 0.19 -1.51 16 11 C 0.10 1.98 6.36 86.22 0.55 2.53 16 12 N -0.62 -19.62 2.98 -837.73 -2.50 -22.11 16 13 C 0.69 30.21 8.29 179.05 1.49 31.69 16 14 O -0.65 -35.50 15.74 -3.99 -0.06 -35.56 16 15 N -0.72 -30.14 5.37 -478.54 -2.57 -32.71 16 16 C 0.20 10.11 5.51 86.38 0.48 10.59 16 17 C 0.01 0.53 1.35 -52.93 -0.07 0.46 16 18 C -0.50 -26.19 8.84 25.60 0.23 -25.96 16 19 H 0.07 3.36 7.82 -2.91 -0.02 3.33 16 20 C 0.02 1.08 5.22 84.65 0.44 1.52 16 21 N -0.91 -53.36 12.44 21.45 0.27 -53.09 16 22 Si 0.95 42.90 29.55 68.60 2.03 44.93 16 23 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 24 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 25 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 26 C -0.18 -8.30 9.88 30.59 0.30 -7.99 16 27 C -0.17 -6.73 9.77 30.59 0.30 -6.43 16 28 C 0.12 3.63 6.02 86.36 0.52 4.15 16 29 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.10 0.91 8.07 -2.39 -0.02 0.89 16 31 H 0.05 1.05 7.42 -2.38 -0.02 1.03 16 32 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.10 0.21 8.07 -2.39 -0.02 0.19 16 34 H 0.08 0.22 6.36 -2.39 -0.02 0.21 16 35 H 0.42 3.88 6.33 -92.71 -0.59 3.30 16 36 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.08 1.70 5.65 -2.39 -0.01 1.69 16 41 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 42 H 0.41 14.44 5.89 -92.71 -0.55 13.89 16 43 H 0.02 1.02 7.86 -2.39 -0.02 1.00 16 44 H 0.03 2.07 7.11 -2.39 -0.02 2.06 16 45 H 0.26 14.62 8.32 -92.71 -0.77 13.85 16 46 H 0.06 3.00 8.05 -2.39 -0.02 2.98 16 47 H 0.07 3.43 8.14 -2.39 -0.02 3.41 16 48 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 49 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 50 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 51 H 0.04 1.81 6.99 -2.39 -0.02 1.80 16 Total: -1.00 -86.91 406.46 0.54 -86.37 By element: Atomic # 1 Polarization: 31.23 SS G_CDS: -0.20 Total: 31.04 kcal Atomic # 6 Polarization: 26.82 SS G_CDS: 8.81 Total: 35.62 kcal Atomic # 7 Polarization: -127.41 SS G_CDS: -9.98 Total: -137.39 kcal Atomic # 8 Polarization: -60.44 SS G_CDS: -0.13 Total: -60.57 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -86.91 0.54 -86.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454895823.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.964 kcal (2) G-P(sol) polarization free energy of solvation -86.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds