Wall clock time and date at job start Tue Mar 31 2020 21:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46896 * 110.99728 * 2 1 4 4 C 1.50696 * 109.47447 * 293.95421 * 3 2 1 5 5 H 1.07997 * 119.99944 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00155 * 180.02562 * 4 3 2 7 7 N 1.31508 * 120.00177 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 119.99921 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47224 * 90.00126 * 8 6 4 10 10 H 1.48504 * 109.47283 * 209.99939 * 8 6 4 11 11 H 1.48491 * 109.47263 * 330.00017 * 8 6 4 12 12 C 1.46896 * 111.00113 * 123.95486 * 2 1 3 13 13 C 1.53005 * 109.47066 * 66.04684 * 12 2 1 14 14 H 1.08995 * 109.47278 * 305.00099 * 13 12 2 15 15 O 1.42893 * 109.46907 * 65.00251 * 13 12 2 16 16 C 1.53007 * 109.46927 * 185.00016 * 13 12 2 17 17 N 1.46898 * 109.46764 * 180.02562 * 16 13 12 18 18 C 1.46906 * 110.99888 * 180.02562 * 17 16 13 19 19 C 1.52999 * 109.46897 * 180.02562 * 18 17 16 20 20 C 1.52997 * 109.47317 * 60.00033 * 19 18 17 21 21 C 1.52997 * 109.47269 * 299.99689 * 19 18 17 22 22 C 1.50706 * 109.46573 * 179.97438 * 19 18 17 23 23 C 1.38244 * 119.97491 * 359.72327 * 22 19 18 24 24 C 1.38201 * 120.02142 * 179.72306 * 23 22 19 25 25 C 1.38459 * 119.97601 * 0.57371 * 24 23 22 26 26 F 1.35094 * 120.02797 * 179.67746 * 25 24 23 27 27 C 1.38461 * 119.94519 * 359.70287 * 25 24 23 28 28 C 1.38193 * 119.98059 * 359.97438 * 27 25 24 29 29 H 1.08999 * 109.47205 * 296.03949 * 1 2 3 30 30 H 1.08994 * 109.46984 * 56.04894 * 1 2 3 31 31 H 1.08999 * 109.46516 * 176.04188 * 1 2 3 32 32 H 1.09000 * 109.47447 * 53.95625 * 3 2 1 33 33 H 1.09001 * 109.47040 * 173.94946 * 3 2 1 34 34 H 0.96997 * 120.00457 * 180.02562 * 7 6 4 35 35 H 1.09003 * 109.47467 * 306.04936 * 12 2 1 36 36 H 1.08998 * 109.47209 * 186.04803 * 12 2 1 37 37 H 0.96694 * 114.00601 * 60.00191 * 15 13 12 38 38 H 1.08997 * 109.46954 * 60.00141 * 16 13 12 39 39 H 1.09004 * 109.47056 * 299.99842 * 16 13 12 40 40 H 1.00896 * 111.00084 * 303.95493 * 17 16 13 41 41 H 1.09000 * 109.47033 * 59.99886 * 18 17 16 42 42 H 1.09001 * 109.46544 * 299.99942 * 18 17 16 43 43 H 1.09001 * 109.46832 * 179.97438 * 20 19 18 44 44 H 1.09002 * 109.47153 * 299.99641 * 20 19 18 45 45 H 1.08996 * 109.46952 * 59.99813 * 20 19 18 46 46 H 1.09000 * 109.47140 * 300.00547 * 21 19 18 47 47 H 1.09001 * 109.47230 * 59.99691 * 21 19 18 48 48 H 1.09001 * 109.47375 * 180.02562 * 21 19 18 49 49 H 1.08000 * 119.98716 * 359.97438 * 23 22 19 50 50 H 1.07996 * 120.01399 * 180.25476 * 24 23 22 51 51 H 1.08009 * 120.01051 * 179.97438 * 27 25 24 52 52 H 1.07999 * 119.99486 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0740 1.5116 -2.0484 6 6 2.0276 3.3492 -1.5288 7 7 2.7136 4.0012 -0.6157 8 14 1.5838 4.1865 -3.1386 9 1 0.2717 4.8674 -2.9971 10 1 2.6265 5.1873 -3.4799 11 1 1.5004 3.1706 -4.2184 12 6 1.9955 -0.7660 1.1375 13 6 1.6315 -2.2427 0.9702 14 1 0.5533 -2.3390 0.8432 15 8 2.2957 -2.7695 -0.1800 16 6 2.0701 -3.0200 2.2130 17 7 1.7212 -4.4378 2.0521 18 6 2.1277 -5.2169 3.2294 19 6 1.7491 -6.6851 3.0248 20 6 2.4611 -7.2272 1.7838 21 6 0.2353 -6.7999 2.8352 22 6 2.1668 -7.4844 4.2323 23 6 2.7948 -6.8573 5.2922 24 6 3.1730 -7.5883 6.4024 25 6 2.9334 -8.9512 6.4478 26 9 3.3086 -9.6679 7.5298 27 6 2.3094 -9.5791 5.3831 28 6 1.9261 -8.8450 4.2768 29 1 -0.3633 0.4511 0.9233 30 1 -0.3633 0.5739 -0.8524 31 1 -0.3632 -1.0252 -0.0709 32 1 1.5611 1.9273 0.8309 33 1 3.0797 1.3444 0.1083 34 1 2.9882 4.9173 -0.7776 35 1 1.5612 -0.3873 2.0628 36 1 3.0798 -0.6611 1.1756 37 1 3.2602 -2.7167 -0.1360 38 1 1.5635 -2.6180 3.0905 39 1 3.1484 -2.9237 2.3401 40 1 0.7354 -4.5490 1.8681 41 1 1.6208 -4.8303 4.1136 42 1 3.2063 -5.1354 3.3641 43 1 2.1917 -8.2734 1.6384 44 1 2.1595 -6.6492 0.9103 45 1 3.5396 -7.1455 1.9189 46 1 -0.2719 -6.4136 3.7193 47 1 -0.0664 -6.2217 1.9618 48 1 -0.0344 -7.8459 2.6899 49 1 2.9863 -5.7951 5.2543 50 1 3.6600 -7.0975 7.2321 51 1 2.1224 -10.6423 5.4173 52 1 1.4397 -9.3346 3.4461 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571315874.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:55 Heat of formation + Delta-G solvation = -93.910899 kcal Electronic energy + Delta-G solvation = -28866.966069 eV Core-core repulsion = 24779.615796 eV Total energy + Delta-G solvation = -4087.350273 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.89339 -40.89343 -39.50564 -37.97352 -36.91655 -34.69500 -34.60661 -32.22095 -31.10658 -30.15987 -29.04716 -28.06568 -27.82390 -26.41175 -24.84709 -23.74661 -23.21244 -22.64223 -21.76037 -20.07739 -18.75311 -18.55110 -17.71056 -17.18112 -17.12103 -16.74278 -16.59738 -16.50511 -16.07429 -15.94159 -15.74589 -15.46341 -15.15986 -14.88888 -14.60597 -14.50281 -14.25880 -14.08006 -14.05076 -13.81857 -13.52971 -13.32358 -13.21695 -13.00889 -12.80250 -12.72234 -12.58925 -12.53219 -12.44268 -12.37497 -12.22167 -11.98013 -11.81023 -11.70437 -11.57612 -11.40820 -11.33732 -10.61846 -10.58659 -10.05637 -9.49835 -9.25118 -8.94236 -8.20514 -6.30360 0.16709 0.28498 1.41336 1.42814 1.54846 2.40644 2.61902 2.93565 3.11981 3.30957 3.43995 3.66089 3.74560 3.81603 3.95795 3.97637 4.01449 4.08828 4.22198 4.31757 4.35595 4.36476 4.46393 4.48002 4.55815 4.70493 4.73758 4.74410 4.79021 4.81310 4.91259 4.95935 4.99306 5.07337 5.07662 5.12137 5.16663 5.17168 5.20357 5.22674 5.28214 5.32897 5.43537 5.56089 5.63866 5.65197 5.94227 6.03829 6.08695 6.33254 6.48483 6.65544 6.85945 7.08472 7.39418 8.90380 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.031059 B = 0.001622 C = 0.001580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.303585 B =17263.609416 C =17719.508750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.540 5.540 3 C 0.207 3.793 4 C -0.524 4.524 5 H 0.061 0.939 6 C 0.001 3.999 7 N -0.935 5.935 8 Si 0.970 3.030 9 H -0.272 1.272 10 H -0.281 1.281 11 H -0.266 1.266 12 C 0.024 3.976 13 C 0.130 3.870 14 H 0.091 0.909 15 O -0.552 6.552 16 C 0.038 3.962 17 N -0.677 5.677 18 C 0.068 3.932 19 C -0.015 4.015 20 C -0.126 4.126 21 C -0.142 4.142 22 C -0.078 4.078 23 C -0.100 4.100 24 C -0.157 4.157 25 C 0.067 3.933 26 F -0.153 7.153 27 C -0.153 4.153 28 C -0.086 4.086 29 H 0.010 0.990 30 H 0.054 0.946 31 H 0.078 0.922 32 H -0.040 1.040 33 H 0.004 0.996 34 H 0.264 0.736 35 H 0.031 0.969 36 H 0.067 0.933 37 H 0.378 0.622 38 H 0.042 0.958 39 H 0.078 0.922 40 H 0.344 0.656 41 H 0.035 0.965 42 H 0.073 0.927 43 H 0.059 0.941 44 H 0.066 0.934 45 H 0.045 0.955 46 H 0.053 0.947 47 H 0.066 0.934 48 H 0.069 0.931 49 H 0.144 0.856 50 H 0.143 0.857 51 H 0.148 0.852 52 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.454 -28.115 13.104 31.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.264 5.264 3 C 0.081 3.919 4 C -0.562 4.562 5 H 0.079 0.921 6 C -0.197 4.197 7 N -0.575 5.575 8 Si 0.794 3.206 9 H -0.198 1.198 10 H -0.207 1.207 11 H -0.190 1.190 12 C -0.106 4.106 13 C 0.070 3.930 14 H 0.109 0.891 15 O -0.357 6.357 16 C -0.092 4.092 17 N -0.309 5.309 18 C -0.061 4.061 19 C -0.015 4.015 20 C -0.183 4.183 21 C -0.199 4.199 22 C -0.078 4.078 23 C -0.118 4.118 24 C -0.175 4.175 25 C 0.048 3.952 26 F -0.132 7.132 27 C -0.172 4.172 28 C -0.104 4.104 29 H 0.029 0.971 30 H 0.073 0.927 31 H 0.096 0.904 32 H -0.022 1.022 33 H 0.022 0.978 34 H 0.073 0.927 35 H 0.049 0.951 36 H 0.085 0.915 37 H 0.225 0.775 38 H 0.060 0.940 39 H 0.097 0.903 40 H 0.163 0.837 41 H 0.053 0.947 42 H 0.091 0.909 43 H 0.078 0.922 44 H 0.085 0.915 45 H 0.064 0.936 46 H 0.072 0.928 47 H 0.085 0.915 48 H 0.088 0.912 49 H 0.162 0.838 50 H 0.161 0.839 51 H 0.166 0.834 52 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -2.243 -28.467 12.199 31.052 hybrid contribution -0.137 1.646 1.490 2.224 sum -2.380 -26.821 13.689 30.207 Atomic orbital electron populations 1.22236 0.87870 1.01133 0.99601 1.61934 1.07946 1.14791 1.41721 1.19394 0.93643 0.84019 0.94865 1.21477 1.34770 0.97498 1.02443 0.92071 1.25914 0.95010 0.98066 1.00727 1.70075 1.39339 1.11870 1.36238 0.85376 0.77963 0.78059 0.79182 1.19774 1.20676 1.19039 1.22856 1.00246 0.95600 0.91855 1.21720 0.97312 0.88495 0.85451 0.89149 1.86547 1.23908 1.83806 1.41469 1.22509 1.01807 0.88546 0.96365 1.60346 1.24090 1.07709 1.38794 1.22105 1.00745 0.92328 0.90928 1.19416 0.96524 0.92941 0.92608 1.21733 0.99466 1.00552 0.96561 1.21927 0.93057 1.03034 1.01923 1.20036 0.98020 0.94274 0.95519 1.21223 0.97371 1.01000 0.92203 1.21338 1.03072 0.92315 1.00796 1.18020 1.01603 0.90452 0.85140 1.91466 1.89714 1.78375 1.53638 1.21355 1.00674 1.01903 0.93274 1.21062 0.98471 0.93168 0.97712 0.97109 0.92720 0.90372 1.02187 0.97827 0.92696 0.95133 0.91490 0.77492 0.93969 0.90318 0.83656 0.94663 0.90890 0.92151 0.91500 0.93566 0.92799 0.91509 0.91242 0.83847 0.83923 0.83389 0.83201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.53 9.14 127.69 1.17 2.70 16 2 N -0.54 -23.25 4.70 -927.06 -4.36 -27.61 16 3 C 0.21 11.13 4.72 85.56 0.40 11.53 16 4 C -0.52 -30.10 8.46 25.60 0.22 -29.88 16 5 H 0.06 3.48 7.12 -2.91 -0.02 3.46 16 6 C 0.00 0.04 5.46 84.66 0.46 0.50 16 7 N -0.93 -56.46 13.29 21.45 0.28 -56.18 16 8 Si 0.97 44.63 29.54 68.60 2.03 46.66 16 9 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 11 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 12 C 0.02 0.79 4.60 86.31 0.40 1.18 16 13 C 0.13 3.36 3.13 30.60 0.10 3.45 16 14 H 0.09 2.36 6.34 -2.39 -0.02 2.34 16 15 O -0.55 -16.02 13.15 -148.98 -1.96 -17.98 16 16 C 0.04 0.72 5.35 86.31 0.46 1.19 16 17 N -0.68 -11.23 5.58 -513.87 -2.87 -14.10 16 18 C 0.07 0.93 3.30 86.30 0.29 1.21 16 19 C -0.01 -0.18 0.67 -52.93 -0.04 -0.21 16 20 C -0.13 -1.68 8.13 71.98 0.59 -1.09 16 21 C -0.14 -1.53 7.96 71.98 0.57 -0.96 16 22 C -0.08 -0.99 4.76 -19.86 -0.09 -1.08 16 23 C -0.10 -1.33 8.97 22.26 0.20 -1.13 16 24 C -0.16 -2.26 10.03 22.31 0.22 -2.04 16 25 C 0.07 1.08 7.30 22.38 0.16 1.24 16 26 F -0.15 -2.85 17.27 44.97 0.78 -2.07 16 27 C -0.15 -2.00 10.03 22.31 0.22 -1.78 16 28 C -0.09 -1.00 8.71 22.26 0.19 -0.80 16 29 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.05 2.31 6.76 -2.39 -0.02 2.29 16 31 H 0.08 2.50 6.37 -2.39 -0.02 2.48 16 32 H -0.04 -2.29 8.12 -2.39 -0.02 -2.31 16 33 H 0.00 0.21 7.93 -2.39 -0.02 0.19 16 34 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 35 H 0.03 0.99 8.12 -2.39 -0.02 0.98 16 36 H 0.07 2.25 7.93 -2.39 -0.02 2.23 16 37 H 0.38 9.24 9.05 -74.06 -0.67 8.57 16 38 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.34 5.48 6.77 -89.70 -0.61 4.87 16 41 H 0.04 0.46 7.53 -2.39 -0.02 0.45 16 42 H 0.07 1.05 7.50 -2.39 -0.02 1.03 16 43 H 0.06 0.66 7.39 -2.39 -0.02 0.64 16 44 H 0.07 1.07 7.60 -2.39 -0.02 1.06 16 45 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 47 H 0.07 0.75 6.57 -2.39 -0.02 0.74 16 48 H 0.07 0.62 7.39 -2.39 -0.02 0.60 16 49 H 0.14 1.58 5.89 -2.91 -0.02 1.56 16 50 H 0.14 1.68 8.06 -2.91 -0.02 1.65 16 51 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 52 H 0.15 1.14 7.10 -2.91 -0.02 1.12 16 Total: -1.00 -67.39 412.16 -0.93 -68.32 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: -0.36 Total: 18.91 kcal Atomic # 6 Polarization: -21.48 SS G_CDS: 5.52 Total: -15.96 kcal Atomic # 7 Polarization: -90.94 SS G_CDS: -6.94 Total: -97.89 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: -1.96 Total: -17.98 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.78 Total: -2.07 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -67.39 -0.93 -68.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571315874.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.588 kcal (2) G-P(sol) polarization free energy of solvation -67.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds