Wall clock time and date at job start Tue Mar 31 2020 21:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46906 * 110.99728 * 2 1 4 4 C 1.50699 * 109.47140 * 66.04805 * 3 2 1 5 5 H 1.08003 * 119.99962 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99861 * 180.02562 * 4 3 2 7 7 N 1.31522 * 120.00244 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99980 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.46950 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47074 * 119.99839 * 8 6 4 11 11 H 1.48505 * 109.46997 * 239.99833 * 8 6 4 12 12 C 1.46905 * 110.99850 * 236.04849 * 2 1 3 13 13 C 1.53000 * 109.47114 * 293.94896 * 12 2 1 14 14 H 1.09000 * 109.46550 * 60.00064 * 13 12 2 15 15 O 1.42901 * 109.46928 * 300.00575 * 13 12 2 16 16 C 1.52996 * 109.47000 * 180.02562 * 13 12 2 17 17 N 1.46899 * 109.46798 * 185.00066 * 16 13 12 18 18 C 1.46901 * 111.00076 * 179.97438 * 17 16 13 19 19 C 1.52997 * 109.47380 * 180.02562 * 18 17 16 20 20 C 1.53002 * 109.47045 * 299.99803 * 19 18 17 21 21 C 1.52992 * 109.47184 * 60.00012 * 19 18 17 22 22 C 1.50698 * 109.47078 * 180.02562 * 19 18 17 23 23 C 1.38240 * 119.97776 * 359.72475 * 22 19 18 24 24 C 1.38200 * 120.03038 * 179.72996 * 23 22 19 25 25 C 1.38460 * 119.96994 * 0.56816 * 24 23 22 26 26 F 1.35103 * 120.02596 * 179.68373 * 25 24 23 27 27 C 1.38460 * 119.94988 * 359.70394 * 25 24 23 28 28 C 1.38201 * 119.97352 * 0.02562 * 27 25 24 29 29 H 1.08996 * 109.47030 * 59.99921 * 1 2 3 30 30 H 1.08999 * 109.46702 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46890 * 299.99929 * 1 2 3 32 32 H 1.09004 * 109.47040 * 186.04743 * 3 2 1 33 33 H 1.09000 * 109.47033 * 306.04695 * 3 2 1 34 34 H 0.96992 * 120.00038 * 179.97438 * 7 6 4 35 35 H 1.08997 * 109.46807 * 53.95411 * 12 2 1 36 36 H 1.09000 * 109.46636 * 173.95277 * 12 2 1 37 37 H 0.96697 * 113.99735 * 299.99403 * 15 13 12 38 38 H 1.08995 * 109.47058 * 304.99907 * 16 13 12 39 39 H 1.08998 * 109.46953 * 65.00454 * 16 13 12 40 40 H 1.00903 * 111.00138 * 56.05087 * 17 16 13 41 41 H 1.09005 * 109.47140 * 300.00367 * 18 17 16 42 42 H 1.09001 * 109.46992 * 59.99753 * 18 17 16 43 43 H 1.09008 * 109.46760 * 60.00547 * 20 19 18 44 44 H 1.08995 * 109.47198 * 180.02562 * 20 19 18 45 45 H 1.08998 * 109.47433 * 300.00538 * 20 19 18 46 46 H 1.08996 * 109.47524 * 60.00254 * 21 19 18 47 47 H 1.09004 * 109.47584 * 179.97438 * 21 19 18 48 48 H 1.08999 * 109.47502 * 300.00252 * 21 19 18 49 49 H 1.08005 * 119.98488 * 359.97438 * 23 22 19 50 50 H 1.07992 * 120.01676 * 180.25504 * 24 23 22 51 51 H 1.07998 * 120.01344 * 179.97438 * 27 25 24 52 52 H 1.07994 * 119.98615 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0739 1.5115 2.0485 6 6 2.0267 3.3495 1.5284 7 7 2.7118 4.0020 0.6149 8 14 1.5829 4.1868 3.1382 9 1 0.8157 3.2441 3.9915 10 1 2.8249 4.5945 3.8430 11 1 0.7549 5.3877 2.8597 12 6 1.9954 -0.7660 -1.1377 13 6 1.6315 -2.2426 -0.9704 14 1 0.5472 -2.3474 -0.9323 15 8 2.2010 -2.7391 0.2426 16 6 2.1803 -3.0404 -2.1549 17 7 1.7299 -4.4352 -2.0566 18 6 2.2384 -5.2331 -3.1803 19 6 1.7491 -6.6763 -3.0438 20 6 2.2599 -7.2656 -1.7274 21 6 0.2193 -6.6991 -3.0531 22 6 2.2713 -7.4949 -4.1962 23 6 3.0589 -6.9008 -5.1646 24 6 3.5429 -7.6518 -6.2189 25 6 3.2291 -8.9971 -6.3114 26 9 3.6964 -9.7309 -7.3451 27 6 2.4355 -9.5899 -5.3439 28 6 1.9572 -8.8381 -4.2875 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.0797 1.3445 -0.1083 33 1 1.5610 1.9274 -0.8309 34 1 2.9857 4.9183 0.7765 35 1 1.5611 -0.3871 -2.0628 36 1 3.0797 -0.6610 -1.1757 37 1 3.1653 -2.6770 0.2786 38 1 1.8160 -2.6058 -3.0857 39 1 3.2698 -3.0086 -2.1409 40 1 0.7237 -4.4873 -2.0027 41 1 1.8742 -4.8135 -4.1181 42 1 3.3283 -5.2165 -3.1739 43 1 1.8825 -6.6736 -0.8936 44 1 1.9117 -8.2939 -1.6304 45 1 3.3497 -7.2493 -1.7207 46 1 -0.1446 -6.2793 -3.9909 47 1 -0.1294 -7.7273 -2.9563 48 1 -0.1581 -6.1071 -2.2194 49 1 3.2993 -5.8501 -5.0950 50 1 4.1616 -7.1883 -6.9731 51 1 2.1897 -10.6391 -5.4153 52 1 1.3378 -9.3002 -3.5330 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571315879.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:57 Heat of formation + Delta-G solvation = -93.926296 kcal Electronic energy + Delta-G solvation = -28865.383137 eV Core-core repulsion = 24778.032197 eV Total energy + Delta-G solvation = -4087.350940 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.89130 -40.89478 -39.50647 -37.97428 -36.90381 -34.70806 -34.60066 -32.22158 -31.10458 -30.15987 -29.05586 -28.06706 -27.81241 -26.40670 -24.85455 -23.74697 -23.21259 -22.66331 -21.74192 -20.07940 -18.75374 -18.55470 -17.71219 -17.17669 -17.11053 -16.74980 -16.59727 -16.49404 -16.08181 -15.91848 -15.74726 -15.46562 -15.18219 -14.89406 -14.61797 -14.50707 -14.25499 -14.07313 -14.05047 -13.81587 -13.52959 -13.33090 -13.20342 -13.00037 -12.81267 -12.72719 -12.59566 -12.53686 -12.44340 -12.36365 -12.22132 -11.98985 -11.81099 -11.70442 -11.56914 -11.40907 -11.32781 -10.62268 -10.58513 -10.05607 -9.49900 -9.25156 -8.94127 -8.20763 -6.30491 0.16698 0.28469 1.41021 1.41920 1.55833 2.40568 2.61884 2.93754 3.11819 3.30922 3.43467 3.66044 3.75496 3.81370 3.95332 3.97612 4.01493 4.08804 4.22728 4.31718 4.35480 4.35800 4.46324 4.47974 4.56501 4.70126 4.73901 4.74521 4.79055 4.81373 4.91133 4.95933 4.99238 5.07261 5.07736 5.11954 5.16616 5.16908 5.20397 5.22574 5.28201 5.32882 5.43470 5.55888 5.63737 5.65505 5.94197 6.03763 6.08601 6.33450 6.48186 6.65510 6.86231 7.08492 7.39436 8.90357 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.030787 B = 0.001623 C = 0.001580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.255934 B =17249.790569 C =17717.147934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.538 5.538 3 C 0.207 3.793 4 C -0.522 4.522 5 H 0.061 0.939 6 C 0.000 4.000 7 N -0.935 5.935 8 Si 0.970 3.030 9 H -0.264 1.264 10 H -0.278 1.278 11 H -0.278 1.278 12 C 0.023 3.977 13 C 0.131 3.869 14 H 0.091 0.909 15 O -0.552 6.552 16 C 0.038 3.962 17 N -0.678 5.678 18 C 0.068 3.932 19 C -0.015 4.015 20 C -0.126 4.126 21 C -0.142 4.142 22 C -0.078 4.078 23 C -0.100 4.100 24 C -0.156 4.156 25 C 0.067 3.933 26 F -0.153 7.153 27 C -0.153 4.153 28 C -0.086 4.086 29 H 0.009 0.991 30 H 0.078 0.922 31 H 0.053 0.947 32 H 0.004 0.996 33 H -0.040 1.040 34 H 0.264 0.736 35 H 0.030 0.970 36 H 0.067 0.933 37 H 0.377 0.623 38 H 0.042 0.958 39 H 0.079 0.921 40 H 0.344 0.656 41 H 0.035 0.965 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.060 0.940 45 H 0.045 0.955 46 H 0.053 0.947 47 H 0.069 0.931 48 H 0.066 0.934 49 H 0.144 0.856 50 H 0.143 0.857 51 H 0.148 0.852 52 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.181 -28.112 -13.137 31.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.262 5.262 3 C 0.080 3.920 4 C -0.560 4.560 5 H 0.079 0.921 6 C -0.198 4.198 7 N -0.576 5.576 8 Si 0.794 3.206 9 H -0.188 1.188 10 H -0.204 1.204 11 H -0.204 1.204 12 C -0.107 4.107 13 C 0.071 3.929 14 H 0.109 0.891 15 O -0.357 6.357 16 C -0.092 4.092 17 N -0.311 5.311 18 C -0.061 4.061 19 C -0.015 4.015 20 C -0.183 4.183 21 C -0.199 4.199 22 C -0.078 4.078 23 C -0.118 4.118 24 C -0.175 4.175 25 C 0.048 3.952 26 F -0.132 7.132 27 C -0.172 4.172 28 C -0.104 4.104 29 H 0.027 0.973 30 H 0.096 0.904 31 H 0.072 0.928 32 H 0.022 0.978 33 H -0.022 1.022 34 H 0.073 0.927 35 H 0.048 0.952 36 H 0.085 0.915 37 H 0.225 0.775 38 H 0.060 0.940 39 H 0.097 0.903 40 H 0.163 0.837 41 H 0.054 0.946 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.079 0.921 45 H 0.064 0.936 46 H 0.072 0.928 47 H 0.088 0.912 48 H 0.085 0.915 49 H 0.161 0.839 50 H 0.161 0.839 51 H 0.166 0.834 52 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -2.047 -28.505 -12.212 31.079 hybrid contribution 0.042 1.686 -1.493 2.253 sum -2.005 -26.819 -13.705 30.184 Atomic orbital electron populations 1.22210 0.87896 1.00862 0.99691 1.61929 1.07924 1.14742 1.41634 1.19412 0.93664 0.84029 0.94866 1.21509 1.34668 0.97457 1.02408 0.92081 1.25917 0.95047 0.98070 1.00719 1.70087 1.39494 1.11856 1.36145 0.85325 0.78085 0.78145 0.79001 1.18845 1.20351 1.20370 1.22852 1.00271 0.95627 0.91912 1.21712 0.98092 0.88626 0.84494 0.89130 1.86548 1.25893 1.84859 1.38437 1.22512 1.01244 0.88671 0.96748 1.60361 1.16833 1.09314 1.44544 1.22102 1.00189 0.92321 0.91488 1.19415 0.96121 0.92931 0.93031 1.21733 1.00477 1.00372 0.95728 1.21928 0.92929 1.03085 1.02007 1.20031 0.97425 0.94435 0.95954 1.21223 0.96691 1.00869 0.93021 1.21337 1.02811 0.92413 1.00957 1.18024 0.99610 0.90414 0.87171 1.91469 1.87275 1.77397 1.57056 1.21355 0.99188 1.01985 0.94674 1.21062 0.98866 0.93083 0.97401 0.97279 0.90358 0.92829 0.97780 1.02199 0.92706 0.95168 0.91465 0.77497 0.93964 0.90276 0.83656 0.94641 0.90907 0.91522 0.92131 0.93584 0.92790 0.91234 0.91490 0.83850 0.83923 0.83386 0.83196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.61 9.16 127.69 1.17 2.78 16 2 N -0.54 -23.14 4.62 -927.03 -4.28 -27.42 16 3 C 0.21 11.09 4.72 85.56 0.40 11.49 16 4 C -0.52 -30.01 8.52 25.60 0.22 -29.80 16 5 H 0.06 3.48 7.10 -2.91 -0.02 3.46 16 6 C 0.00 0.01 5.46 84.65 0.46 0.47 16 7 N -0.94 -56.49 13.29 21.45 0.28 -56.20 16 8 Si 0.97 44.67 29.54 68.60 2.03 46.70 16 9 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 12 C 0.02 0.75 4.62 86.30 0.40 1.15 16 13 C 0.13 3.36 3.02 30.59 0.09 3.45 16 14 H 0.09 2.34 6.47 -2.39 -0.02 2.32 16 15 O -0.55 -16.11 13.15 -148.98 -1.96 -18.07 16 16 C 0.04 0.73 5.32 86.30 0.46 1.19 16 17 N -0.68 -11.25 5.66 -513.90 -2.91 -14.16 16 18 C 0.07 0.93 3.30 86.30 0.29 1.22 16 19 C -0.01 -0.18 0.67 -52.93 -0.04 -0.21 16 20 C -0.13 -1.68 8.13 71.98 0.59 -1.09 16 21 C -0.14 -1.52 7.96 71.98 0.57 -0.95 16 22 C -0.08 -0.99 4.76 -19.86 -0.09 -1.08 16 23 C -0.10 -1.33 8.97 22.26 0.20 -1.13 16 24 C -0.16 -2.26 10.03 22.31 0.22 -2.04 16 25 C 0.07 1.08 7.30 22.38 0.16 1.24 16 26 F -0.15 -2.85 17.27 44.97 0.78 -2.07 16 27 C -0.15 -2.00 10.03 22.31 0.22 -1.78 16 28 C -0.09 -1.00 8.71 22.26 0.19 -0.80 16 29 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.08 2.51 6.30 -2.39 -0.02 2.49 16 31 H 0.05 2.26 6.86 -2.39 -0.02 2.25 16 32 H 0.00 0.24 7.93 -2.38 -0.02 0.22 16 33 H -0.04 -2.30 8.12 -2.39 -0.02 -2.32 16 34 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 35 H 0.03 0.98 8.12 -2.39 -0.02 0.96 16 36 H 0.07 2.25 7.93 -2.39 -0.02 2.23 16 37 H 0.38 9.35 9.04 -74.06 -0.67 8.68 16 38 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.08 1.48 8.14 -2.39 -0.02 1.47 16 40 H 0.34 5.41 6.77 -89.69 -0.61 4.80 16 41 H 0.04 0.47 7.50 -2.38 -0.02 0.45 16 42 H 0.07 1.05 7.52 -2.39 -0.02 1.03 16 43 H 0.07 1.07 7.60 -2.38 -0.02 1.05 16 44 H 0.06 0.66 7.39 -2.39 -0.02 0.64 16 45 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 47 H 0.07 0.61 7.39 -2.38 -0.02 0.60 16 48 H 0.07 0.74 6.57 -2.39 -0.02 0.73 16 49 H 0.14 1.58 5.89 -2.91 -0.02 1.56 16 50 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 51 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 52 H 0.15 1.14 7.10 -2.91 -0.02 1.11 16 Total: -1.00 -67.47 412.27 -0.90 -68.37 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: -0.36 Total: 18.72 kcal Atomic # 6 Polarization: -21.39 SS G_CDS: 5.52 Total: -15.87 kcal Atomic # 7 Polarization: -90.87 SS G_CDS: -6.91 Total: -97.78 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -1.96 Total: -18.07 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.78 Total: -2.07 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -67.47 -0.90 -68.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571315879.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.560 kcal (2) G-P(sol) polarization free energy of solvation -67.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds