Wall clock time and date at job start Tue Mar 31 2020 21:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53007 * 109.46848 * 2 1 4 4 C 1.53000 * 109.46777 * 119.99826 * 2 1 3 5 5 H 1.08996 * 109.47157 * 60.00483 * 4 2 1 6 6 N 1.46903 * 109.46643 * 180.02562 * 4 2 1 7 7 C 1.46903 * 111.00177 * 274.99960 * 6 4 2 8 8 C 1.52992 * 109.47578 * 180.02562 * 7 6 4 9 9 H 1.08998 * 109.46862 * 305.00661 * 8 7 6 10 10 O 1.42905 * 109.46980 * 64.99788 * 8 7 6 11 11 C 1.52997 * 109.47482 * 185.00096 * 8 7 6 12 12 N 1.46899 * 109.47254 * 179.97438 * 11 8 7 13 13 C 1.46902 * 111.00255 * 293.95367 * 12 11 8 14 14 C 1.46901 * 111.00103 * 169.99667 * 12 11 8 15 15 C 1.50696 * 109.47399 * 190.00043 * 14 12 11 16 16 H 1.08005 * 119.99725 * 0.02562 * 15 14 12 17 17 C 1.37878 * 120.00189 * 180.02562 * 15 14 12 18 18 N 1.31513 * 119.99790 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00051 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47047 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47167 * 119.99895 * 19 17 15 22 22 H 1.48495 * 109.47058 * 239.99959 * 19 17 15 23 23 C 1.50694 * 109.47317 * 299.99989 * 4 2 1 24 24 C 1.38244 * 119.97497 * 279.72603 * 23 4 2 25 25 C 1.38206 * 120.02476 * 179.76873 * 24 23 4 26 26 C 1.38456 * 119.97155 * 0.50532 * 25 24 23 27 27 F 1.35106 * 120.02363 * 179.76736 * 26 25 24 28 28 C 1.38462 * 119.95070 * 359.75021 * 26 25 24 29 29 C 1.38190 * 119.97404 * 359.97438 * 28 26 25 30 30 H 1.08993 * 109.47232 * 300.00241 * 1 2 3 31 31 H 1.09001 * 109.46618 * 59.99896 * 1 2 3 32 32 H 1.08996 * 109.46883 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46946 * 240.00101 * 2 1 3 34 34 H 1.09006 * 109.46539 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.47092 * 299.99573 * 3 2 1 36 36 H 1.08996 * 109.46762 * 60.00226 * 3 2 1 37 37 H 1.00906 * 110.99771 * 151.04910 * 6 4 2 38 38 H 1.09001 * 109.46871 * 59.99686 * 7 6 4 39 39 H 1.09004 * 109.46883 * 300.00718 * 7 6 4 40 40 H 0.96696 * 114.00036 * 60.00352 * 10 8 7 41 41 H 1.09002 * 109.47153 * 59.99783 * 11 8 7 42 42 H 1.09001 * 109.46832 * 299.99974 * 11 8 7 43 43 H 1.09005 * 109.46528 * 59.99744 * 13 12 11 44 44 H 1.09000 * 109.46785 * 179.97438 * 13 12 11 45 45 H 1.08997 * 109.47044 * 300.00388 * 13 12 11 46 46 H 1.08998 * 109.47407 * 310.00536 * 14 12 11 47 47 H 1.09007 * 109.46608 * 69.99971 * 14 12 11 48 48 H 0.96994 * 119.99598 * 179.97438 * 18 17 15 49 49 H 1.08002 * 119.98890 * 0.02562 * 24 23 4 50 50 H 1.07997 * 120.01092 * 180.25718 * 25 24 23 51 51 H 1.08001 * 120.00962 * 179.97438 * 28 26 25 52 52 H 1.08003 * 119.99018 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6767 -1.7489 1.2493 6 7 3.5090 -0.7207 1.2496 7 6 4.0361 -1.8438 0.4629 8 6 5.5654 -1.8102 0.4871 9 1 5.9129 -0.8366 0.1416 10 8 6.0257 -2.0342 1.8213 11 6 6.1142 -2.9033 -0.4320 12 7 7.5827 -2.8706 -0.4092 13 6 8.0909 -1.6269 -1.0032 14 6 8.1460 -4.0462 -1.0866 15 6 9.6303 -4.1084 -0.8336 16 1 10.1074 -3.3507 -0.2297 17 6 10.3793 -5.1326 -1.3732 18 7 9.7982 -6.0555 -2.1082 19 14 12.2190 -5.2101 -1.0591 20 1 12.6246 -4.0629 -0.2077 21 1 12.5500 -6.4818 -0.3674 22 1 12.9452 -5.1469 -2.3528 23 6 1.5376 -0.0108 2.4797 24 6 2.1758 1.1311 2.9268 25 6 1.7131 1.7861 4.0524 26 6 0.6163 1.2923 4.7382 27 9 0.1659 1.9292 5.8413 28 6 -0.0188 0.1456 4.2924 29 6 0.4422 -0.5045 3.1635 30 1 -0.3633 0.5138 0.8899 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 3.1301 1.4425 0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 3.8704 -0.7379 2.1915 38 1 3.6867 -1.7620 -0.5663 39 1 3.6867 -2.7832 0.8916 40 1 5.7531 -2.8838 2.1940 41 1 5.7631 -2.7325 -1.4497 42 1 5.7667 -3.8769 -0.0864 43 1 7.7135 -0.7741 -0.4389 44 1 9.1805 -1.6287 -0.9731 45 1 7.7557 -1.5549 -2.0379 46 1 7.6735 -4.9493 -0.7004 47 1 7.9629 -3.9702 -2.1585 48 1 10.3252 -6.7758 -2.4880 49 1 3.0338 1.5138 2.3940 50 1 2.2092 2.6805 4.3991 51 1 -0.8741 -0.2407 4.8269 52 1 -0.0533 -1.3988 2.8153 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576089173.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:09 Heat of formation + Delta-G solvation = -95.082090 kcal Electronic energy + Delta-G solvation = -29518.708805 eV Core-core repulsion = 25431.307745 eV Total energy + Delta-G solvation = -4087.401059 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.88142 -40.91802 -39.46975 -37.82827 -36.89858 -34.61133 -34.35447 -32.15474 -31.81171 -30.62358 -28.99880 -27.95489 -27.58866 -26.11234 -24.69358 -23.77660 -23.03562 -22.50192 -21.75666 -20.28744 -18.58313 -18.56113 -17.71281 -17.38263 -17.10810 -16.76299 -16.66143 -16.56812 -16.09130 -15.93187 -15.78541 -15.40477 -15.17735 -14.93376 -14.67264 -14.50182 -14.30884 -14.10026 -14.00147 -13.75724 -13.37873 -13.26008 -13.10553 -13.00022 -12.82261 -12.77330 -12.61938 -12.52691 -12.49262 -12.34729 -12.02393 -11.90559 -11.82585 -11.70658 -11.56252 -11.37512 -11.29995 -10.69116 -10.62458 -9.99270 -9.50643 -9.33153 -8.94444 -8.20886 -6.30365 0.15360 0.31327 1.40745 1.41455 1.55370 2.40252 2.61000 2.94631 3.11623 3.32002 3.42676 3.63917 3.73981 3.83790 3.99468 4.00085 4.12798 4.16855 4.24491 4.28896 4.40174 4.42554 4.42957 4.50093 4.59857 4.65307 4.73783 4.75591 4.83025 4.88426 4.94837 4.99356 5.04537 5.08376 5.12587 5.17625 5.18277 5.19563 5.20125 5.29741 5.33989 5.34517 5.51286 5.53747 5.60051 5.65507 5.94443 6.04844 6.11169 6.33594 6.47010 6.65283 6.86226 6.98901 7.39351 8.90209 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.020195 B = 0.001961 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.123152 B =14276.796860 C =14886.212676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.079 4.079 3 C -0.141 4.141 4 C 0.136 3.864 5 H 0.058 0.942 6 N -0.676 5.676 7 C 0.041 3.959 8 C 0.130 3.870 9 H 0.096 0.904 10 O -0.560 6.560 11 C 0.024 3.976 12 N -0.539 5.539 13 C 0.041 3.959 14 C 0.208 3.792 15 C -0.521 4.521 16 H 0.060 0.940 17 C 0.000 4.000 18 N -0.934 5.934 19 Si 0.969 3.031 20 H -0.265 1.265 21 H -0.278 1.278 22 H -0.278 1.278 23 C -0.093 4.093 24 C -0.072 4.072 25 C -0.162 4.162 26 C 0.075 3.925 27 F -0.153 7.153 28 C -0.157 4.157 29 C -0.083 4.083 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.046 0.954 36 H 0.055 0.945 37 H 0.349 0.651 38 H 0.083 0.917 39 H 0.042 0.958 40 H 0.378 0.622 41 H 0.032 0.968 42 H 0.067 0.933 43 H 0.076 0.924 44 H 0.053 0.947 45 H 0.010 0.990 46 H 0.004 0.996 47 H -0.040 1.040 48 H 0.264 0.736 49 H 0.144 0.856 50 H 0.142 0.858 51 H 0.148 0.852 52 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.638 14.320 9.112 29.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.098 4.098 3 C -0.198 4.198 4 C 0.027 3.973 5 H 0.076 0.924 6 N -0.308 5.308 7 C -0.089 4.089 8 C 0.070 3.930 9 H 0.113 0.887 10 O -0.366 6.366 11 C -0.105 4.105 12 N -0.263 5.263 13 C -0.107 4.107 14 C 0.081 3.919 15 C -0.559 4.559 16 H 0.079 0.921 17 C -0.198 4.198 18 N -0.575 5.575 19 Si 0.794 3.206 20 H -0.189 1.189 21 H -0.203 1.203 22 H -0.204 1.204 23 C -0.094 4.094 24 C -0.090 4.090 25 C -0.181 4.181 26 C 0.056 3.944 27 F -0.131 7.131 28 C -0.176 4.176 29 C -0.101 4.101 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.169 0.831 38 H 0.101 0.899 39 H 0.060 0.940 40 H 0.226 0.774 41 H 0.050 0.950 42 H 0.085 0.915 43 H 0.095 0.905 44 H 0.072 0.928 45 H 0.029 0.971 46 H 0.022 0.978 47 H -0.022 1.022 48 H 0.073 0.927 49 H 0.162 0.838 50 H 0.160 0.840 51 H 0.166 0.834 52 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -23.148 15.213 8.947 29.109 hybrid contribution 0.191 -1.555 -0.197 1.579 sum -22.957 13.658 8.750 28.109 Atomic orbital electron populations 1.21855 0.94533 1.02026 1.01972 1.21034 0.95487 0.96922 0.96386 1.21839 1.01706 0.95256 1.01012 1.20475 0.87377 0.97302 0.92140 0.92382 1.60442 1.06207 1.44679 1.19474 1.22529 0.94218 0.92434 0.99752 1.21760 0.91616 0.97581 0.82038 0.88665 1.86567 1.79421 1.42116 1.28471 1.22830 0.88823 1.00150 0.98719 1.61930 1.05849 1.02868 1.55649 1.22210 1.00656 0.92075 0.95744 1.19393 0.94659 0.88006 0.89822 1.21498 0.93538 1.10081 1.30822 0.92136 1.25915 1.03878 0.95137 0.94874 1.70083 1.37761 1.14385 1.35292 0.85336 0.79019 0.78264 0.78017 1.18894 1.20317 1.20377 1.19975 0.96507 0.96381 0.96527 1.21086 0.99526 0.94036 0.94389 1.21350 0.96929 1.02560 0.97212 1.18020 0.96633 0.94108 0.85618 1.91472 1.88766 1.81500 1.51401 1.21297 1.02181 0.95235 0.98887 1.21100 0.95579 0.99909 0.93528 0.92644 0.92424 0.92184 0.91464 0.92115 0.93492 0.92626 0.83113 0.89868 0.93986 0.77404 0.95020 0.91488 0.90527 0.92828 0.97128 0.97780 1.02213 0.92701 0.83804 0.83972 0.83445 0.83382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 8.79 71.98 0.63 -1.09 16 2 C -0.08 -1.10 2.83 -10.79 -0.03 -1.13 16 3 C -0.14 -2.11 7.96 71.98 0.57 -1.54 16 4 C 0.14 1.89 2.12 44.17 0.09 1.98 16 5 H 0.06 0.77 7.66 -2.39 -0.02 0.75 16 6 N -0.68 -11.14 4.92 -495.46 -2.44 -13.57 16 7 C 0.04 0.76 5.16 86.30 0.44 1.20 16 8 C 0.13 3.30 3.08 30.59 0.09 3.40 16 9 H 0.10 2.60 6.55 -2.39 -0.02 2.59 16 10 O -0.56 -15.37 12.72 -148.98 -1.90 -17.27 16 11 C 0.02 0.79 4.62 86.30 0.40 1.19 16 12 N -0.54 -23.14 4.62 -927.04 -4.28 -27.43 16 13 C 0.04 1.62 9.14 127.69 1.17 2.79 16 14 C 0.21 11.10 4.72 85.56 0.40 11.50 16 15 C -0.52 -29.89 8.46 25.60 0.22 -29.68 16 16 H 0.06 3.45 7.12 -2.91 -0.02 3.43 16 17 C 0.00 -0.02 5.46 84.66 0.46 0.45 16 18 N -0.93 -56.34 13.29 21.45 0.28 -56.05 16 19 Si 0.97 44.67 29.54 68.60 2.03 46.70 16 20 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 22 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 23 C -0.09 -1.28 3.56 -19.86 -0.07 -1.35 16 24 C -0.07 -1.07 6.78 22.26 0.15 -0.92 16 25 C -0.16 -2.52 10.03 22.31 0.22 -2.30 16 26 C 0.08 1.28 7.30 22.38 0.16 1.44 16 27 F -0.15 -2.96 17.27 44.97 0.78 -2.18 16 28 C -0.16 -2.17 10.03 22.31 0.22 -1.94 16 29 C -0.08 -1.02 8.70 22.26 0.19 -0.83 16 30 H 0.05 0.68 6.64 -2.39 -0.02 0.67 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.07 1.03 7.45 -2.39 -0.02 1.01 16 34 H 0.06 1.04 7.60 -2.38 -0.02 1.03 16 35 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.05 0.82 5.62 -2.39 -0.01 0.81 16 37 H 0.35 6.17 7.54 -89.69 -0.68 5.49 16 38 H 0.08 1.53 7.44 -2.39 -0.02 1.51 16 39 H 0.04 0.73 8.06 -2.39 -0.02 0.71 16 40 H 0.38 8.45 9.05 -74.06 -0.67 7.78 16 41 H 0.03 1.03 8.12 -2.39 -0.02 1.01 16 42 H 0.07 2.20 7.93 -2.39 -0.02 2.18 16 43 H 0.08 2.55 6.47 -2.38 -0.02 2.53 16 44 H 0.05 2.30 6.76 -2.39 -0.02 2.28 16 45 H 0.01 0.39 8.14 -2.39 -0.02 0.38 16 46 H 0.00 0.23 7.93 -2.39 -0.02 0.22 16 47 H -0.04 -2.31 8.12 -2.38 -0.02 -2.33 16 48 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 49 H 0.14 2.13 6.90 -2.91 -0.02 2.11 16 50 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 51 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 52 H 0.15 1.24 8.04 -2.91 -0.02 1.22 16 Total: -1.00 -65.83 410.39 -0.62 -66.44 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: -0.43 Total: 20.19 kcal Atomic # 6 Polarization: -22.17 SS G_CDS: 5.34 Total: -16.83 kcal Atomic # 7 Polarization: -90.62 SS G_CDS: -6.44 Total: -97.05 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: -1.90 Total: -17.27 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.78 Total: -2.18 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -65.83 -0.62 -66.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576089173.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.639 kcal (2) G-P(sol) polarization free energy of solvation -65.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds