Wall clock time and date at job start Tue Mar 31 2020 21:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47071 * 2 1 4 4 C 1.52999 * 109.47305 * 119.99572 * 2 1 3 5 5 H 1.08994 * 109.47878 * 179.41571 * 4 2 1 6 6 N 1.46900 * 109.46782 * 59.41952 * 4 2 1 7 7 C 1.46902 * 111.00179 * 85.36621 * 6 4 2 8 8 C 1.53000 * 109.47158 * 175.55423 * 7 6 4 9 9 H 1.09007 * 109.46927 * 304.99349 * 8 7 6 10 10 O 1.42898 * 109.47434 * 64.99673 * 8 7 6 11 11 C 1.53006 * 109.46815 * 185.00084 * 8 7 6 12 12 N 1.46905 * 109.46702 * 179.97438 * 11 8 7 13 13 C 1.46899 * 111.00082 * 293.95136 * 12 11 8 14 14 C 1.46904 * 110.99527 * 169.99609 * 12 11 8 15 15 C 1.50692 * 109.46960 * 189.99624 * 14 12 11 16 16 H 1.08007 * 120.00475 * 0.02562 * 15 14 12 17 17 C 1.37883 * 120.00124 * 180.02562 * 15 14 12 18 18 N 1.31510 * 119.99597 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00038 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47027 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.46995 * 120.00220 * 19 17 15 22 22 H 1.48499 * 109.47017 * 239.99914 * 19 17 15 23 23 C 1.50705 * 109.47198 * 299.42478 * 4 2 1 24 24 C 1.38238 * 119.97558 * 79.72502 * 23 4 2 25 25 C 1.38204 * 120.02380 * 179.73043 * 24 23 4 26 26 C 1.38458 * 119.97360 * 0.51808 * 25 24 23 27 27 F 1.35100 * 120.02882 * 179.73257 * 26 25 24 28 28 C 1.38463 * 119.94854 * 359.74784 * 26 25 24 29 29 C 1.38201 * 119.97061 * 0.02562 * 28 26 25 30 30 H 1.08995 * 109.47094 * 300.00248 * 1 2 3 31 31 H 1.09001 * 109.46644 * 60.00131 * 1 2 3 32 32 H 1.09000 * 109.47062 * 179.97438 * 1 2 3 33 33 H 1.08991 * 109.47773 * 239.99989 * 2 1 3 34 34 H 1.09002 * 109.47277 * 174.20790 * 3 2 1 35 35 H 1.09001 * 109.47060 * 294.21245 * 3 2 1 36 36 H 1.09007 * 109.46597 * 54.20926 * 3 2 1 37 37 H 1.00901 * 111.00070 * 209.32034 * 6 4 2 38 38 H 1.08998 * 109.47228 * 55.55157 * 7 6 4 39 39 H 1.09004 * 109.46825 * 295.54914 * 7 6 4 40 40 H 0.96697 * 113.99815 * 60.00448 * 10 8 7 41 41 H 1.08997 * 109.46752 * 299.99282 * 11 8 7 42 42 H 1.09001 * 109.46995 * 59.99785 * 11 8 7 43 43 H 1.08995 * 109.46923 * 60.00319 * 13 12 11 44 44 H 1.08999 * 109.46893 * 180.02562 * 13 12 11 45 45 H 1.09006 * 109.46881 * 300.00486 * 13 12 11 46 46 H 1.09000 * 109.47371 * 310.00126 * 14 12 11 47 47 H 1.09005 * 109.46525 * 70.00222 * 14 12 11 48 48 H 0.97006 * 119.99807 * 180.02562 * 18 17 15 49 49 H 1.08005 * 119.99126 * 359.97119 * 24 23 4 50 50 H 1.07999 * 120.01081 * 180.29389 * 25 24 23 51 51 H 1.07998 * 120.01427 * 179.97438 * 28 26 25 52 52 H 1.08005 * 119.98539 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 3.1299 -0.7303 1.2441 6 7 1.5389 -2.1020 1.2564 7 6 2.4163 -2.9845 0.4757 8 6 1.9258 -4.4287 0.5973 9 1 1.8598 -4.7025 1.6503 10 8 0.6365 -4.5464 -0.0074 11 6 2.9089 -5.3625 -0.1117 12 7 2.4383 -6.7491 0.0055 13 6 2.4734 -7.2006 1.4030 14 6 3.2202 -7.6451 -0.8570 15 6 2.5623 -9.0001 -0.9013 16 1 1.6539 -9.1779 -0.3448 17 6 3.1200 -10.0130 -1.6524 18 7 4.2263 -9.7967 -2.3297 19 14 2.3041 -11.6925 -1.7079 20 1 1.0813 -11.6768 -0.8655 21 1 1.9363 -12.0181 -3.1093 22 1 3.2465 -12.7179 -1.1926 23 6 1.5494 -0.0025 2.4797 24 6 0.2569 -0.2026 2.9272 25 6 -0.1923 0.4516 4.0586 26 6 0.6493 1.3161 4.7378 27 9 0.2096 1.9604 5.8409 28 6 1.9420 1.5200 4.2855 29 6 2.3904 0.8610 3.1565 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 3.1251 1.4443 0.1037 35 1 1.7637 1.9256 -0.9373 36 1 1.5944 1.9854 0.8337 37 1 1.4306 -2.4426 2.2000 38 1 3.4351 -2.9135 0.8566 39 1 2.3979 -2.6815 -0.5712 40 1 0.6203 -4.3177 -0.9468 41 1 2.9750 -5.0887 -1.1647 42 1 3.8924 -5.2726 0.3496 43 1 1.8304 -6.5610 2.0076 44 1 2.1204 -8.2302 1.4611 45 1 3.4958 -7.1456 1.7770 46 1 3.2668 -7.2306 -1.8641 47 1 4.2296 -7.7441 -0.4577 48 1 4.6185 -10.5092 -2.8584 49 1 -0.4010 -0.8736 2.3947 50 1 -1.2007 0.2914 4.4108 51 1 2.5993 2.1944 4.8142 52 1 3.3986 1.0203 2.8032 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576089175.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:15 Heat of formation + Delta-G solvation = -93.301894 kcal Electronic energy + Delta-G solvation = -29521.549846 eV Core-core repulsion = 25434.225982 eV Total energy + Delta-G solvation = -4087.323864 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -49.88717 -40.91017 -39.43052 -37.82497 -36.83366 -34.60150 -34.41346 -32.15593 -31.76862 -30.59317 -28.99861 -27.93977 -27.58863 -26.09350 -24.70444 -23.77610 -23.06582 -22.52076 -21.74653 -20.28468 -18.58412 -18.55621 -17.70471 -17.41547 -16.99634 -16.73794 -16.65263 -16.53188 -16.12168 -15.90495 -15.78171 -15.33690 -15.16171 -15.00277 -14.67835 -14.51030 -14.25443 -14.14239 -13.99985 -13.81280 -13.37516 -13.15193 -13.11655 -12.96097 -12.80782 -12.77599 -12.59762 -12.57993 -12.50728 -12.35063 -11.99526 -11.90751 -11.79689 -11.68801 -11.58954 -11.35990 -11.29215 -10.62432 -10.59996 -9.99703 -9.50970 -9.29439 -8.94393 -8.20849 -6.30309 0.14997 0.30959 1.40761 1.41622 1.55481 2.40325 2.60661 2.94602 3.11670 3.31615 3.42767 3.62772 3.79754 3.83648 3.96565 3.99878 4.12078 4.14815 4.25123 4.33188 4.40042 4.42890 4.44289 4.51903 4.55360 4.66415 4.72026 4.74893 4.82052 4.88837 4.93649 4.99315 5.04501 5.07724 5.14575 5.17153 5.19228 5.19811 5.21597 5.29807 5.32762 5.35579 5.51645 5.54676 5.63512 5.65556 5.94226 6.04943 6.11416 6.33155 6.44247 6.65506 6.86289 7.08670 7.39379 8.90221 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.020535 B = 0.001955 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.198248 B =14321.277864 C =14881.832391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.077 4.077 3 C -0.145 4.145 4 C 0.136 3.864 5 H 0.058 0.942 6 N -0.670 5.670 7 C 0.040 3.960 8 C 0.131 3.869 9 H 0.089 0.911 10 O -0.552 6.552 11 C 0.023 3.977 12 N -0.539 5.539 13 C 0.041 3.959 14 C 0.208 3.792 15 C -0.521 4.521 16 H 0.060 0.940 17 C 0.000 4.000 18 N -0.934 5.934 19 Si 0.969 3.031 20 H -0.265 1.265 21 H -0.278 1.278 22 H -0.278 1.278 23 C -0.094 4.094 24 C -0.072 4.072 25 C -0.162 4.162 26 C 0.075 3.925 27 F -0.153 7.153 28 C -0.158 4.158 29 C -0.083 4.083 30 H 0.054 0.946 31 H 0.045 0.955 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.053 0.947 37 H 0.344 0.656 38 H 0.044 0.956 39 H 0.081 0.919 40 H 0.378 0.622 41 H 0.068 0.932 42 H 0.030 0.970 43 H 0.076 0.924 44 H 0.053 0.947 45 H 0.010 0.990 46 H 0.004 0.996 47 H -0.040 1.040 48 H 0.264 0.736 49 H 0.145 0.855 50 H 0.142 0.858 51 H 0.147 0.853 52 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.430 26.803 10.412 29.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.097 4.097 3 C -0.203 4.203 4 C 0.027 3.973 5 H 0.076 0.924 6 N -0.302 5.302 7 C -0.090 4.090 8 C 0.071 3.929 9 H 0.107 0.893 10 O -0.357 6.357 11 C -0.106 4.106 12 N -0.263 5.263 13 C -0.107 4.107 14 C 0.081 3.919 15 C -0.559 4.559 16 H 0.079 0.921 17 C -0.198 4.198 18 N -0.575 5.575 19 Si 0.794 3.206 20 H -0.189 1.189 21 H -0.203 1.203 22 H -0.204 1.204 23 C -0.094 4.094 24 C -0.090 4.090 25 C -0.180 4.180 26 C 0.056 3.944 27 F -0.131 7.131 28 C -0.176 4.176 29 C -0.101 4.101 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.163 0.837 38 H 0.062 0.938 39 H 0.100 0.900 40 H 0.225 0.775 41 H 0.086 0.914 42 H 0.048 0.952 43 H 0.095 0.905 44 H 0.072 0.928 45 H 0.028 0.972 46 H 0.023 0.977 47 H -0.022 1.022 48 H 0.073 0.927 49 H 0.163 0.837 50 H 0.160 0.840 51 H 0.165 0.835 52 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.421 26.644 10.268 29.064 hybrid contribution 1.717 -0.782 0.266 1.905 sum -3.704 25.862 10.533 28.170 Atomic orbital electron populations 1.21831 0.94845 1.02199 1.00857 1.21012 0.96727 0.95555 0.96356 1.21850 1.01106 0.95490 1.01865 1.20511 0.96965 0.87681 0.92178 0.92437 1.60442 1.50123 1.00754 1.18835 1.22579 0.94395 0.92074 0.99945 1.21710 0.82841 0.91429 0.96944 0.89298 1.86550 1.29177 1.91506 1.28450 1.22852 0.96694 0.89973 1.01073 1.61927 1.54949 1.01511 1.07880 1.22215 0.98470 1.01106 0.88939 1.19393 0.89769 0.91573 0.91135 1.21498 1.09773 0.96132 1.28540 0.92131 1.25917 0.95603 1.03253 0.95037 1.70085 1.21139 1.34565 1.31728 0.85336 0.78565 0.78657 0.78073 1.18887 1.20316 1.20387 1.19984 0.94381 0.98491 0.96570 1.21098 0.95649 0.98007 0.94269 1.21353 1.01072 0.98446 0.97180 1.18021 0.94531 0.96188 0.85647 1.91470 1.90058 1.80191 1.51424 1.21298 0.94500 1.02961 0.98858 1.21101 1.00485 0.94946 0.93590 0.92742 0.93631 0.91940 0.91444 0.92186 0.92441 0.92828 0.83728 0.93816 0.90032 0.77460 0.91376 0.95205 0.90500 0.92809 0.97177 0.97747 1.02250 0.92701 0.83749 0.83982 0.83474 0.83416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 7.96 71.98 0.57 -1.56 16 2 C -0.08 -1.07 2.84 -10.79 -0.03 -1.10 16 3 C -0.15 -1.73 8.59 71.98 0.62 -1.11 16 4 C 0.14 1.86 2.13 44.17 0.09 1.96 16 5 H 0.06 0.76 7.58 -2.39 -0.02 0.74 16 6 N -0.67 -10.87 4.89 -495.44 -2.42 -13.29 16 7 C 0.04 0.74 5.17 86.30 0.45 1.19 16 8 C 0.13 3.30 2.98 30.60 0.09 3.39 16 9 H 0.09 2.29 6.53 -2.38 -0.02 2.27 16 10 O -0.55 -15.72 13.15 -148.98 -1.96 -17.68 16 11 C 0.02 0.77 4.62 86.30 0.40 1.16 16 12 N -0.54 -23.07 4.62 -927.03 -4.28 -27.35 16 13 C 0.04 1.59 9.14 127.69 1.17 2.76 16 14 C 0.21 11.09 4.72 85.55 0.40 11.50 16 15 C -0.52 -29.88 8.46 25.60 0.22 -29.67 16 16 H 0.06 3.45 7.12 -2.91 -0.02 3.43 16 17 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 18 N -0.93 -56.32 13.29 21.45 0.28 -56.04 16 19 Si 0.97 44.67 29.54 68.60 2.03 46.69 16 20 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 22 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 23 C -0.09 -1.27 3.57 -19.86 -0.07 -1.34 16 24 C -0.07 -1.06 6.80 22.26 0.15 -0.90 16 25 C -0.16 -2.50 10.03 22.31 0.22 -2.27 16 26 C 0.08 1.26 7.30 22.38 0.16 1.43 16 27 F -0.15 -2.94 17.27 44.97 0.78 -2.16 16 28 C -0.16 -2.15 10.03 22.31 0.22 -1.93 16 29 C -0.08 -1.01 8.86 22.26 0.20 -0.81 16 30 H 0.05 0.82 5.57 -2.39 -0.01 0.81 16 31 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.06 1.12 7.59 -2.39 -0.02 1.10 16 33 H 0.07 1.03 7.58 -2.39 -0.02 1.01 16 34 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.05 0.67 7.02 -2.38 -0.02 0.66 16 37 H 0.34 5.71 7.91 -89.69 -0.71 5.00 16 38 H 0.04 0.77 7.95 -2.39 -0.02 0.75 16 39 H 0.08 1.47 7.58 -2.38 -0.02 1.45 16 40 H 0.38 9.11 9.05 -74.06 -0.67 8.44 16 41 H 0.07 2.24 7.93 -2.39 -0.02 2.23 16 42 H 0.03 0.96 8.12 -2.39 -0.02 0.94 16 43 H 0.08 2.50 6.47 -2.39 -0.02 2.49 16 44 H 0.05 2.29 6.76 -2.39 -0.02 2.28 16 45 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 46 H 0.00 0.25 7.93 -2.39 -0.02 0.23 16 47 H -0.04 -2.33 8.12 -2.38 -0.02 -2.35 16 48 H 0.26 14.91 8.31 -92.70 -0.77 14.14 16 49 H 0.14 2.14 6.85 -2.91 -0.02 2.12 16 50 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 51 H 0.15 1.51 8.06 -2.91 -0.02 1.48 16 52 H 0.15 1.23 8.04 -2.91 -0.02 1.20 16 Total: -1.00 -66.05 411.44 -0.71 -66.76 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: -0.46 Total: 19.95 kcal Atomic # 6 Polarization: -22.21 SS G_CDS: 5.33 Total: -16.88 kcal Atomic # 7 Polarization: -90.26 SS G_CDS: -6.42 Total: -96.69 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -1.96 Total: -17.68 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.78 Total: -2.16 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -66.05 -0.71 -66.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576089175.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.543 kcal (2) G-P(sol) polarization free energy of solvation -66.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds