Wall clock time and date at job start Tue Mar 31 2020 21:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99903 * 2 1 4 4 H 1.48501 * 109.46880 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47246 * 300.00436 * 3 2 1 6 6 H 1.48498 * 109.46824 * 60.00339 * 3 2 1 7 7 C 1.37879 * 119.99850 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99521 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00147 * 359.97438 * 7 2 1 10 10 O 1.42904 * 110.35250 * 302.14119 * 9 7 2 11 11 C 1.54592 * 110.31198 * 64.28318 * 9 7 2 12 12 C 1.54935 * 102.92439 * 140.86892 * 11 9 7 13 13 N 1.48532 * 103.23120 * 322.59281 * 12 11 9 14 14 C 1.46899 * 111.00521 * 159.71906 * 13 12 11 15 15 C 1.50698 * 109.46987 * 52.59789 * 14 13 12 16 16 O 1.21283 * 120.00472 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99538 * 179.97438 * 15 14 13 18 18 C 1.46499 * 119.99665 * 179.72653 * 17 15 14 19 19 C 1.53004 * 109.47198 * 180.27868 * 18 17 15 20 20 C 1.52997 * 109.47000 * 179.97438 * 19 18 17 21 21 C 1.53004 * 109.47000 * 180.02562 * 20 19 18 22 22 C 1.53005 * 109.46971 * 295.00509 * 21 20 19 23 23 C 1.53004 * 109.46971 * 180.02562 * 22 21 20 24 24 C 1.52995 * 109.47202 * 59.99885 * 23 22 21 25 25 C 1.53005 * 109.47251 * 299.99944 * 24 23 22 26 26 C 1.52995 * 109.47202 * 175.00394 * 21 20 19 27 27 C 1.47902 * 105.82040 * 39.19825 * 13 12 11 28 28 H 0.97002 * 120.00353 * 359.97438 * 1 2 3 29 29 H 0.96698 * 113.99567 * 57.85890 * 10 9 7 30 30 H 1.08994 * 110.72545 * 259.23231 * 11 9 7 31 31 H 1.09011 * 110.72257 * 22.33837 * 11 9 7 32 32 H 1.08996 * 110.67300 * 204.15252 * 12 11 9 33 33 H 1.09006 * 110.66239 * 81.02129 * 12 11 9 34 34 H 1.09003 * 109.46477 * 292.60279 * 14 13 12 35 35 H 1.08993 * 109.47002 * 172.60605 * 14 13 12 36 36 H 0.97001 * 120.00485 * 0.02562 * 17 15 14 37 37 H 1.09009 * 109.47454 * 300.27637 * 18 17 15 38 38 H 1.08998 * 109.47492 * 60.27932 * 18 17 15 39 39 H 1.08995 * 109.46638 * 300.00121 * 19 18 17 40 40 H 1.09006 * 109.47139 * 60.00254 * 19 18 17 41 41 H 1.08995 * 109.47672 * 299.99669 * 20 19 18 42 42 H 1.09007 * 109.47288 * 60.00489 * 20 19 18 43 43 H 1.09000 * 109.47217 * 55.00134 * 21 20 19 44 44 H 1.09001 * 109.46831 * 299.99299 * 22 21 20 45 45 H 1.08997 * 109.47225 * 59.99460 * 22 21 20 46 46 H 1.09000 * 109.47217 * 299.99625 * 23 22 21 47 47 H 1.09001 * 109.46829 * 179.97438 * 23 22 21 48 48 H 1.08998 * 109.47401 * 180.02562 * 24 23 22 49 49 H 1.09001 * 109.47706 * 60.00024 * 24 23 22 50 50 H 1.09000 * 109.46844 * 300.00061 * 25 24 23 51 51 H 1.08997 * 109.47225 * 180.02562 * 25 24 23 52 52 H 1.09001 * 109.46934 * 299.99575 * 26 21 20 53 53 H 1.09001 * 109.47706 * 60.00024 * 26 21 20 54 54 H 1.09004 * 109.91425 * 94.02645 * 27 13 12 55 55 H 1.08999 * 109.91911 * 215.12227 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 0.3857 -2.5734 1.1343 11 6 0.4374 -2.6491 -1.3064 12 6 0.6021 -4.1515 -1.6468 13 7 2.0055 -4.4374 -1.2532 14 6 2.2116 -5.8771 -1.0467 15 6 1.7364 -6.6319 -2.2614 16 8 1.2722 -6.0298 -3.2064 17 7 1.8283 -7.9761 -2.2981 18 6 1.3608 -8.7103 -3.4765 19 6 1.5709 -10.2102 -3.2593 20 6 1.0820 -10.9770 -4.4898 21 6 1.2915 -12.4769 -4.2724 22 6 2.7895 -12.7743 -4.1786 23 6 2.9990 -14.2744 -3.9619 24 6 2.3979 -15.0483 -5.1368 25 6 0.9000 -14.7509 -5.2306 26 6 0.6903 -13.2513 -5.4469 27 6 2.2346 -3.6841 -0.0012 28 1 -0.4851 0.8400 0.0004 29 1 -0.2561 -1.8520 1.1873 30 1 -0.6113 -2.4045 -1.1378 31 1 0.8558 -2.0240 -2.0955 32 1 0.4594 -4.3222 -2.7138 33 1 -0.0919 -4.7565 -1.0632 34 1 1.6476 -6.2031 -0.1728 35 1 3.2720 -6.0734 -0.8887 36 1 2.1999 -8.4577 -1.5425 37 1 0.3005 -8.5107 -3.6320 38 1 1.9235 -8.3877 -4.3525 39 1 2.6310 -10.4097 -3.1039 40 1 1.0080 -10.5329 -2.3833 41 1 0.0218 -10.7774 -4.6448 42 1 1.6445 -10.6545 -5.3660 43 1 0.8020 -12.7819 -3.3474 44 1 3.2790 -12.4695 -5.1036 45 1 3.2178 -12.2226 -3.3419 46 1 2.5094 -14.5798 -3.0371 47 1 4.0661 -14.4863 -3.8955 48 1 2.5467 -16.1170 -4.9822 49 1 2.8875 -14.7430 -6.0616 50 1 0.4104 -15.0563 -4.3058 51 1 0.4716 -15.3026 -6.0673 52 1 -0.3768 -13.0395 -5.5136 53 1 1.1798 -12.9465 -6.3719 54 1 2.0431 -4.3261 0.8587 55 1 3.2610 -3.3187 0.0298 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592149696.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:25 Heat of formation + Delta-G solvation = -136.868431 kcal Electronic energy + Delta-G solvation = -29347.285276 eV Core-core repulsion = 25381.532530 eV Total energy + Delta-G solvation = -3965.752746 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.12240 -39.82949 -39.48718 -36.89615 -36.24925 -34.44102 -34.11816 -32.24086 -31.61373 -30.80719 -29.82186 -28.12457 -26.49532 -25.41766 -23.72892 -22.84920 -22.29413 -21.82506 -21.26579 -21.02664 -20.56014 -19.12750 -17.91963 -17.37637 -17.01429 -16.81465 -16.53291 -16.38339 -15.93312 -15.81312 -15.67827 -15.09154 -15.01213 -14.81375 -14.64167 -14.43606 -14.18067 -13.90770 -13.76019 -13.48097 -13.33300 -13.20113 -13.06200 -12.95032 -12.86199 -12.61211 -12.43551 -12.37031 -12.28295 -12.23920 -12.08987 -11.94485 -11.87962 -11.84626 -11.55447 -11.26976 -11.15428 -10.89992 -10.76936 -10.67033 -10.53418 -10.11480 -10.00080 -9.33143 -8.20596 -6.34266 1.40443 1.43034 1.54468 1.64126 2.10243 2.40562 3.01939 3.17686 3.69771 3.78741 3.83120 3.89712 3.91802 4.08811 4.12090 4.25786 4.28862 4.29987 4.34001 4.35435 4.48238 4.50520 4.53772 4.63062 4.63990 4.66100 4.66668 4.70005 4.75170 4.83353 4.87341 4.90439 4.99959 5.09432 5.11141 5.17680 5.22115 5.29376 5.30736 5.32311 5.39229 5.40061 5.40782 5.46292 5.54623 5.56448 5.59582 5.67360 5.77037 5.94455 6.09611 6.15814 6.60590 6.70775 7.31239 7.35491 7.44272 8.86021 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.039164 B = 0.001534 C = 0.001522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.778443 B =18249.804007 C =18388.623504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.024 3.976 3 Si 0.962 3.038 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.277 1.277 7 C -0.553 4.553 8 H 0.058 0.942 9 C 0.226 3.774 10 O -0.600 6.600 11 C -0.112 4.112 12 C 0.049 3.951 13 N -0.510 5.510 14 C 0.025 3.975 15 C 0.512 3.488 16 O -0.566 6.566 17 N -0.717 5.717 18 C 0.120 3.880 19 C -0.118 4.118 20 C -0.111 4.111 21 C -0.081 4.081 22 C -0.116 4.116 23 C -0.120 4.120 24 C -0.121 4.121 25 C -0.119 4.119 26 C -0.116 4.116 27 C 0.063 3.937 28 H 0.269 0.731 29 H 0.378 0.622 30 H 0.045 0.955 31 H 0.041 0.959 32 H 0.088 0.912 33 H 0.026 0.974 34 H 0.078 0.922 35 H 0.130 0.870 36 H 0.417 0.583 37 H 0.050 0.950 38 H 0.054 0.946 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.071 0.929 44 H 0.057 0.943 45 H 0.068 0.932 46 H 0.061 0.939 47 H 0.062 0.938 48 H 0.062 0.938 49 H 0.058 0.942 50 H 0.061 0.939 51 H 0.062 0.938 52 H 0.060 0.940 53 H 0.058 0.942 54 H 0.047 0.953 55 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.114 -30.906 -7.192 31.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.175 4.175 3 Si 0.788 3.212 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.203 1.203 7 C -0.591 4.591 8 H 0.076 0.924 9 C 0.186 3.814 10 O -0.409 6.409 11 C -0.151 4.151 12 C -0.078 4.078 13 N -0.235 5.235 14 C -0.106 4.106 15 C 0.298 3.702 16 O -0.444 6.444 17 N -0.371 5.371 18 C -0.003 4.003 19 C -0.156 4.156 20 C -0.149 4.149 21 C -0.099 4.099 22 C -0.153 4.153 23 C -0.158 4.158 24 C -0.159 4.159 25 C -0.157 4.157 26 C -0.154 4.154 27 C -0.064 4.064 28 H 0.078 0.922 29 H 0.228 0.772 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.106 0.894 33 H 0.044 0.956 34 H 0.096 0.904 35 H 0.148 0.852 36 H 0.254 0.746 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.101 0.899 40 H 0.097 0.903 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.089 0.911 44 H 0.076 0.924 45 H 0.087 0.913 46 H 0.080 0.920 47 H 0.081 0.919 48 H 0.081 0.919 49 H 0.076 0.924 50 H 0.079 0.921 51 H 0.080 0.920 52 H 0.079 0.921 53 H 0.077 0.923 54 H 0.065 0.935 55 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.363 -30.773 -8.160 32.134 hybrid contribution -0.643 1.280 0.695 1.592 sum 3.720 -29.492 -7.465 30.649 Atomic orbital electron populations 1.69720 1.06946 1.28069 1.51086 1.25743 0.95850 1.02463 0.93453 0.85444 0.79005 0.79169 0.77598 1.19326 1.20718 1.20274 1.22014 0.93591 0.92021 1.51471 0.92390 1.19613 0.86762 0.92575 0.82468 1.86051 1.51977 1.53618 1.49274 1.22802 0.99067 0.94017 0.99251 1.23254 0.88052 0.95496 1.01047 1.64682 1.23789 1.06099 1.28975 1.22381 1.04647 0.88450 0.95162 1.20758 0.77713 0.82983 0.88708 1.90653 1.46058 1.68707 1.39014 1.45840 1.64505 1.05497 1.21251 1.21381 0.98950 0.92380 0.87634 1.21765 1.03167 0.91027 0.99639 1.21527 1.01397 0.94511 0.97443 1.21109 0.96203 0.93825 0.98809 1.21649 0.95659 0.96099 1.01931 1.21540 1.00642 0.95199 0.98405 1.21549 0.95726 0.99924 0.98657 1.21521 0.96420 0.95998 1.01763 1.21580 1.00540 0.95060 0.98180 1.22753 0.99585 0.94387 0.89686 0.92200 0.77184 0.93651 0.93990 0.89399 0.95554 0.90447 0.85184 0.74645 0.93118 0.92793 0.89867 0.90350 0.91926 0.91935 0.91074 0.92449 0.91290 0.92009 0.91916 0.91876 0.92366 0.92062 0.91950 0.92080 0.92335 0.93462 0.90120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.11 10.88 21.45 0.23 -50.87 16 2 C 0.02 1.34 5.26 84.65 0.45 1.78 16 3 Si 0.96 43.64 29.54 68.60 2.03 45.67 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.55 -30.87 8.10 25.60 0.21 -30.66 16 8 H 0.06 3.21 7.35 -2.91 -0.02 3.19 16 9 C 0.23 11.75 0.99 -10.66 -0.01 11.74 16 10 O -0.60 -32.37 12.93 -148.98 -1.93 -34.29 16 11 C -0.11 -5.76 5.49 31.80 0.17 -5.58 16 12 C 0.05 2.16 5.30 86.65 0.46 2.62 16 13 N -0.51 -20.57 5.26 -887.57 -4.67 -25.24 16 14 C 0.02 0.71 5.52 85.56 0.47 1.18 16 15 C 0.51 14.95 7.54 87.66 0.66 15.61 16 16 O -0.57 -21.96 13.52 -3.04 -0.04 -22.00 16 17 N -0.72 -13.81 5.56 -463.05 -2.57 -16.38 16 18 C 0.12 2.16 5.67 86.38 0.49 2.65 16 19 C -0.12 -1.26 5.08 30.59 0.16 -1.10 16 20 C -0.11 -1.19 4.68 30.59 0.14 -1.05 16 21 C -0.08 -0.77 2.19 -10.79 -0.02 -0.79 16 22 C -0.12 -1.07 4.96 30.60 0.15 -0.91 16 23 C -0.12 -1.06 5.92 30.59 0.18 -0.88 16 24 C -0.12 -1.08 5.92 30.59 0.18 -0.90 16 25 C -0.12 -1.09 5.92 30.58 0.18 -0.91 16 26 C -0.12 -1.15 5.20 30.58 0.16 -0.99 16 27 C 0.06 2.78 6.16 86.45 0.53 3.31 16 28 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 29 H 0.38 21.01 7.05 -74.06 -0.52 20.49 16 30 H 0.04 2.41 8.05 -2.39 -0.02 2.39 16 31 H 0.04 2.30 7.86 -2.38 -0.02 2.29 16 32 H 0.09 4.04 5.97 -2.39 -0.01 4.03 16 33 H 0.03 1.13 8.02 -2.38 -0.02 1.11 16 34 H 0.08 2.01 7.81 -2.39 -0.02 1.99 16 35 H 0.13 2.94 8.14 -2.39 -0.02 2.92 16 36 H 0.42 4.98 8.47 -92.71 -0.79 4.20 16 37 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 38 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.08 0.73 6.57 -2.39 -0.02 0.72 16 40 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 41 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 43 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.07 0.58 6.57 -2.39 -0.02 0.56 16 46 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 47 H 0.06 0.52 8.14 -2.39 -0.02 0.51 16 48 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 49 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 50 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 51 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 52 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 53 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 54 H 0.05 1.93 7.39 -2.38 -0.02 1.91 16 55 H 0.08 3.50 7.40 -2.39 -0.02 3.48 16 Total: -1.00 -67.34 416.02 -2.83 -70.17 By element: Atomic # 1 Polarization: 38.30 SS G_CDS: -0.45 Total: 37.85 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: 4.56 Total: -4.91 kcal Atomic # 7 Polarization: -85.49 SS G_CDS: -7.01 Total: -92.49 kcal Atomic # 8 Polarization: -54.32 SS G_CDS: -1.97 Total: -56.29 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -67.34 -2.83 -70.17 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592149696.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.696 kcal (2) G-P(sol) polarization free energy of solvation -67.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds