Wall clock time and date at job start Tue Mar 31 2020 20:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34775 * 120.00297 * 2 1 4 4 O 1.21345 * 120.00231 * 185.06466 * 3 2 1 5 5 C 1.49449 * 119.99712 * 5.07595 * 3 2 1 6 6 O 1.21357 * 119.99636 * 274.78466 * 5 3 2 7 7 N 1.34778 * 120.00272 * 95.06690 * 5 3 2 8 8 C 1.47075 * 120.88059 * 4.57745 * 7 5 3 9 9 C 1.53696 * 108.27687 * 128.75969 * 8 7 5 10 10 N 1.46893 * 109.25879 * 54.07933 * 9 8 7 11 11 C 1.46900 * 110.99991 * 172.60960 * 10 9 8 12 12 C 1.50697 * 109.47013 * 294.30142 * 11 10 9 13 13 H 1.08001 * 120.00184 * 0.02562 * 12 11 10 14 14 C 1.37882 * 119.99665 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00430 * 359.97438 * 14 12 11 16 16 Si 1.86808 * 119.99743 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46794 * 89.99764 * 16 14 12 18 18 H 1.48498 * 109.46938 * 209.99348 * 16 14 12 19 19 H 1.48493 * 109.47102 * 329.99724 * 16 14 12 20 20 C 1.46897 * 111.26964 * 296.76208 * 10 9 8 21 21 C 1.47081 * 120.87947 * 184.86139 * 7 5 3 22 22 C 1.46506 * 119.99629 * 180.02562 * 2 1 3 23 23 C 1.53119 * 109.52287 * 59.68611 * 22 2 1 24 24 C 1.53032 * 109.27623 * 182.44030 * 23 22 2 25 25 N 1.46840 * 109.52899 * 59.17715 * 24 23 22 26 26 C 1.46848 * 111.19631 * 298.26042 * 25 24 23 27 27 C 1.53036 * 109.52411 * 61.73890 * 26 25 24 28 28 H 1.09000 * 109.47097 * 84.82979 * 1 2 3 29 29 H 1.08999 * 109.47570 * 204.82934 * 1 2 3 30 30 H 1.08999 * 109.46863 * 324.83359 * 1 2 3 31 31 H 1.09000 * 109.62686 * 248.52650 * 8 7 5 32 32 H 1.09004 * 109.62871 * 9.10579 * 8 7 5 33 33 H 1.09004 * 109.64591 * 294.07862 * 9 8 7 34 34 H 1.09001 * 109.42192 * 173.94719 * 9 8 7 35 35 H 1.08997 * 109.47274 * 54.30600 * 11 10 9 36 36 H 1.09006 * 109.46880 * 174.30280 * 11 10 9 37 37 H 0.96993 * 120.00537 * 180.02562 * 15 14 12 38 38 H 1.08998 * 109.49202 * 303.13910 * 20 10 9 39 39 H 1.09004 * 109.49452 * 183.06761 * 20 10 9 40 40 H 1.09000 * 109.62792 * 350.88751 * 21 7 5 41 41 H 1.08994 * 109.62907 * 111.47642 * 21 7 5 42 42 H 1.09004 * 109.51957 * 179.87220 * 22 2 1 43 43 H 1.09002 * 109.50365 * 302.38045 * 23 22 2 44 44 H 1.09001 * 109.50545 * 62.49675 * 23 22 2 45 45 H 1.09006 * 109.46269 * 299.15629 * 24 23 22 46 46 H 1.09000 * 109.46154 * 179.19451 * 24 23 22 47 47 H 1.00903 * 110.99895 * 62.35285 * 25 24 23 48 48 H 1.09002 * 109.46288 * 301.71996 * 26 25 24 49 49 H 1.09008 * 109.45379 * 181.74924 * 26 25 24 50 50 H 1.09004 * 109.50551 * 180.88224 * 27 26 25 51 51 H 1.08999 * 109.50640 * 60.76303 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3488 1.1692 -0.0928 5 6 1.3961 2.4589 0.1145 6 8 0.9385 2.9857 -0.8784 7 7 1.2393 3.0416 1.3197 8 6 1.8751 2.4769 2.5196 9 6 2.6464 3.6004 3.2304 10 7 1.7386 4.7277 3.4813 11 6 2.3869 5.7507 4.3126 12 6 2.6572 5.1866 5.6836 13 1 2.3761 4.1696 5.9142 14 6 3.2636 5.9687 6.6436 15 7 3.6065 7.2069 6.3627 16 14 3.5995 5.2692 8.3429 17 1 4.9442 4.6394 8.3619 18 1 3.5506 6.3624 9.3467 19 1 2.5707 4.2498 8.6706 20 6 1.2464 5.3056 2.2237 21 6 0.4226 4.2555 1.4706 22 6 2.1974 -1.2688 -0.0006 23 6 1.8224 -2.0756 -1.2468 24 6 2.5436 -3.4249 -1.2110 25 7 2.1568 -4.1562 0.0021 26 6 2.5494 -3.4226 1.2122 27 6 1.8283 -2.0733 1.2488 28 1 -0.3633 0.0926 -1.0235 29 1 -0.3634 -0.9326 0.4315 30 1 -0.3633 0.8401 0.5919 31 1 1.1105 2.0760 3.1849 32 1 2.5648 1.6841 2.2299 33 1 3.4729 3.9320 2.6018 34 1 3.0360 3.2292 4.1783 35 1 3.3276 6.0512 3.8513 36 1 1.7314 6.6174 4.3991 37 1 4.0334 7.7571 7.0379 38 1 2.0923 5.6135 1.6092 39 1 0.6206 6.1711 2.4414 40 1 0.1516 4.6392 0.4871 41 1 -0.4789 4.0222 2.0371 42 1 3.2693 -1.0706 -0.0028 43 1 0.7449 -2.2392 -1.2637 44 1 2.1217 -1.5265 -2.1395 45 1 3.6212 -3.2608 -1.2081 46 1 2.2675 -4.0076 -2.0899 47 1 1.1675 -4.3547 0.0047 48 1 3.6270 -3.2585 1.2038 49 1 2.2774 -4.0038 2.0934 50 1 2.1319 -1.5225 2.1391 51 1 0.7509 -2.2368 1.2712 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601583355.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:24 Heat of formation + Delta-G solvation = -48.925566 kcal Electronic energy + Delta-G solvation = -30856.994179 eV Core-core repulsion = 26791.514578 eV Total energy + Delta-G solvation = -4065.479601 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.18287 -39.69521 -38.41609 -37.52248 -35.76173 -34.57669 -32.49585 -31.35053 -31.33136 -30.89577 -28.50818 -27.42894 -26.22989 -24.86329 -23.50566 -23.38835 -22.96639 -21.74520 -20.69189 -20.08988 -18.80803 -17.91706 -17.34036 -16.83752 -16.42898 -16.19001 -15.39337 -15.22094 -15.15721 -14.91563 -14.76970 -14.59192 -14.50720 -14.03252 -13.89194 -13.72154 -13.56412 -13.38041 -13.22812 -12.92495 -12.79307 -12.70177 -12.36475 -12.20925 -12.00279 -11.69316 -11.55497 -11.37256 -11.18926 -11.14250 -11.01892 -10.98754 -10.81786 -10.67335 -10.59687 -9.94488 -9.64464 -9.33558 -9.12614 -8.89082 -8.72737 -8.50543 -7.41396 -6.09570 -4.12000 1.91822 2.00051 2.46369 3.15410 3.27187 3.33878 3.36929 3.84820 3.97730 4.22807 4.35326 4.36560 4.58856 4.61062 4.68858 4.70371 4.88318 4.98204 4.99856 5.05713 5.11527 5.23809 5.28634 5.28920 5.34535 5.37688 5.40806 5.52104 5.53534 5.55188 5.59865 5.63780 5.71227 5.74739 5.85088 6.02706 6.19134 6.33751 6.37545 6.48296 6.53147 6.76808 6.90226 7.12286 7.17663 7.24763 7.56888 7.68724 7.76418 7.94408 8.05874 8.41542 8.94731 9.52668 11.01241 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.014213 B = 0.002757 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.544299 B =10152.616056 C =11572.490853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.598 5.598 3 C 0.521 3.479 4 O -0.510 6.510 5 C 0.515 3.485 6 O -0.524 6.524 7 N -0.589 5.589 8 C 0.108 3.892 9 C 0.052 3.948 10 N -0.535 5.535 11 C 0.194 3.806 12 C -0.511 4.511 13 H 0.064 0.936 14 C 0.056 3.944 15 N -0.897 5.897 16 Si 0.898 3.102 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.273 1.273 20 C 0.039 3.961 21 C 0.117 3.883 22 C 0.139 3.861 23 C -0.166 4.166 24 C 0.060 3.940 25 N -0.686 5.686 26 C 0.060 3.940 27 C -0.168 4.168 28 H 0.063 0.937 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.029 0.971 34 H 0.100 0.900 35 H -0.008 1.008 36 H 0.033 0.967 37 H 0.262 0.738 38 H 0.029 0.971 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.105 0.895 43 H 0.067 0.933 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.080 0.920 47 H 0.341 0.659 48 H 0.078 0.922 49 H 0.082 0.918 50 H 0.077 0.923 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.715 -20.608 -12.903 25.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.333 5.333 3 C 0.303 3.697 4 O -0.383 6.383 5 C 0.297 3.703 6 O -0.400 6.400 7 N -0.323 5.323 8 C -0.015 4.015 9 C -0.077 4.077 10 N -0.261 5.261 11 C 0.069 3.931 12 C -0.550 4.550 13 H 0.082 0.918 14 C -0.145 4.145 15 N -0.536 5.536 16 Si 0.726 3.274 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.197 1.197 20 C -0.090 4.090 21 C -0.005 4.005 22 C 0.036 3.964 23 C -0.206 4.206 24 C -0.071 4.071 25 N -0.314 5.314 26 C -0.071 4.071 27 C -0.208 4.208 28 H 0.082 0.918 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.048 0.952 34 H 0.118 0.882 35 H 0.010 0.990 36 H 0.051 0.949 37 H 0.072 0.928 38 H 0.048 0.952 39 H 0.104 0.896 40 H 0.109 0.891 41 H 0.099 0.901 42 H 0.123 0.877 43 H 0.086 0.914 44 H 0.093 0.907 45 H 0.096 0.904 46 H 0.098 0.902 47 H 0.158 0.842 48 H 0.096 0.904 49 H 0.100 0.900 50 H 0.096 0.904 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.049 -20.717 -13.138 25.524 hybrid contribution 0.207 1.005 0.537 1.158 sum -6.842 -19.712 -12.601 24.375 Atomic orbital electron populations 1.21849 0.78790 1.03528 1.02628 1.47903 1.07458 1.05158 1.72755 1.20386 0.87899 0.84726 0.76639 1.90808 1.13072 1.86311 1.48150 1.20101 0.80126 0.85963 0.84121 1.90780 1.48916 1.64436 1.35822 1.48288 1.49169 1.27881 1.06955 1.22201 0.97077 0.96735 0.85445 1.22381 0.93239 0.91791 1.00339 1.62112 1.39327 1.10930 1.13694 1.19734 0.92462 0.89415 0.91489 1.21115 1.38632 0.99301 0.95912 0.91808 1.24997 0.95683 0.94842 0.99023 1.69949 1.41525 1.07488 1.34630 0.86494 0.78600 0.78651 0.83658 1.20695 1.21226 1.19734 1.22418 0.98472 0.96461 0.91684 1.21920 0.93547 0.83777 1.01245 1.21215 0.98448 0.81902 0.94832 1.22651 1.01444 0.98073 0.98444 1.22022 1.00547 0.91360 0.93127 1.60619 1.22667 1.46227 1.01888 1.22028 1.00557 0.91311 0.93155 1.22681 1.01536 0.98180 0.98370 0.91806 0.90148 0.90952 0.89974 0.90524 0.95250 0.88156 0.98990 0.94892 0.92811 0.95237 0.89642 0.89051 0.90134 0.87688 0.91410 0.90737 0.90442 0.90166 0.84155 0.90380 0.89985 0.90403 0.91303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.59 9.21 59.85 0.55 1.14 16 2 N -0.60 -6.24 2.77 -174.30 -0.48 -6.72 16 3 C 0.52 7.54 5.63 -11.59 -0.07 7.48 16 4 O -0.51 -8.87 16.22 5.50 0.09 -8.78 16 5 C 0.51 8.07 5.70 -11.58 -0.07 8.00 16 6 O -0.52 -9.35 16.55 5.49 0.09 -9.26 16 7 N -0.59 -8.84 3.00 -172.69 -0.52 -9.36 16 8 C 0.11 1.58 6.51 -3.37 -0.02 1.56 16 9 C 0.05 0.96 5.47 -3.47 -0.02 0.94 16 10 N -0.54 -10.90 4.62 -235.47 -1.09 -11.99 16 11 C 0.19 4.87 4.72 -4.98 -0.02 4.84 16 12 C -0.51 -13.75 8.41 -34.44 -0.29 -14.04 16 13 H 0.06 1.67 7.13 -52.49 -0.37 1.30 16 14 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 15 N -0.90 -26.15 13.29 55.43 0.74 -25.41 16 16 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 19 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 20 C 0.04 0.68 5.62 -3.70 -0.02 0.66 16 21 C 0.12 1.71 6.61 -3.60 -0.02 1.68 16 22 C 0.14 1.20 2.58 -67.81 -0.18 1.03 16 23 C -0.17 -1.14 5.39 -26.65 -0.14 -1.28 16 24 C 0.06 0.36 6.55 -3.84 -0.03 0.34 16 25 N -0.69 -4.14 6.87 -113.82 -0.78 -4.92 16 26 C 0.06 0.37 6.55 -3.83 -0.03 0.34 16 27 C -0.17 -1.12 5.39 -26.65 -0.14 -1.27 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.44 6.40 -51.93 -0.33 0.10 16 30 H 0.07 0.63 6.99 -51.93 -0.36 0.27 16 31 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.08 1.07 6.29 -51.93 -0.33 0.75 16 33 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.10 1.95 6.67 -51.93 -0.35 1.61 16 35 H -0.01 -0.21 8.12 -51.93 -0.42 -0.63 16 36 H 0.03 0.88 7.97 -51.93 -0.41 0.47 16 37 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 38 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.09 1.41 7.99 -51.93 -0.41 1.00 16 40 H 0.09 1.30 7.04 -51.93 -0.37 0.94 16 41 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.11 1.14 6.91 -51.93 -0.36 0.79 16 43 H 0.07 0.40 7.59 -51.93 -0.39 0.01 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.34 1.63 8.86 -39.29 -0.35 1.29 16 48 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 49 H 0.08 0.44 8.14 -51.92 -0.42 0.02 16 50 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 51 H 0.07 0.39 6.59 -51.93 -0.34 0.05 16 LS Contribution 396.41 15.07 5.97 5.97 Total: -1.00 -32.56 396.41 -10.18 -42.74 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -8.59 Total: -1.13 kcal Atomic # 6 Polarization: 13.46 SS G_CDS: -0.59 Total: 12.88 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: -2.13 Total: -58.40 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: 0.18 Total: -18.03 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.56 -10.18 -42.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601583355.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.190 kcal (2) G-P(sol) polarization free energy of solvation -32.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds