Wall clock time and date at job start Tue Mar 31 2020 20:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34775 * 120.00297 * 2 1 4 4 O 1.21345 * 120.00231 * 185.06466 * 3 2 1 5 5 C 1.49449 * 119.99712 * 5.07595 * 3 2 1 6 6 O 1.21357 * 119.99636 * 274.78466 * 5 3 2 7 7 N 1.34778 * 120.00272 * 95.06690 * 5 3 2 8 8 C 1.47075 * 120.88059 * 4.57745 * 7 5 3 9 9 C 1.53696 * 108.27687 * 128.75969 * 8 7 5 10 10 N 1.46893 * 109.25879 * 54.07933 * 9 8 7 11 11 C 1.46900 * 110.99991 * 172.60960 * 10 9 8 12 12 C 1.50697 * 109.47013 * 294.30142 * 11 10 9 13 13 H 1.08001 * 120.00184 * 0.02562 * 12 11 10 14 14 C 1.37882 * 119.99665 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00430 * 359.97438 * 14 12 11 16 16 Si 1.86808 * 119.99743 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46794 * 89.99764 * 16 14 12 18 18 H 1.48498 * 109.46938 * 209.99348 * 16 14 12 19 19 H 1.48493 * 109.47102 * 329.99724 * 16 14 12 20 20 C 1.46897 * 111.26964 * 296.76208 * 10 9 8 21 21 C 1.47081 * 120.87947 * 184.86139 * 7 5 3 22 22 C 1.46506 * 119.99629 * 180.02562 * 2 1 3 23 23 C 1.53119 * 109.52287 * 59.68611 * 22 2 1 24 24 C 1.53032 * 109.27623 * 182.44030 * 23 22 2 25 25 N 1.46840 * 109.52899 * 59.17715 * 24 23 22 26 26 C 1.46848 * 111.19631 * 298.26042 * 25 24 23 27 27 C 1.53036 * 109.52411 * 61.73890 * 26 25 24 28 28 H 1.09000 * 109.47097 * 84.82979 * 1 2 3 29 29 H 1.08999 * 109.47570 * 204.82934 * 1 2 3 30 30 H 1.08999 * 109.46863 * 324.83359 * 1 2 3 31 31 H 1.09000 * 109.62686 * 248.52650 * 8 7 5 32 32 H 1.09004 * 109.62871 * 9.10579 * 8 7 5 33 33 H 1.09004 * 109.64591 * 294.07862 * 9 8 7 34 34 H 1.09001 * 109.42192 * 173.94719 * 9 8 7 35 35 H 1.08997 * 109.47274 * 54.30600 * 11 10 9 36 36 H 1.09006 * 109.46880 * 174.30280 * 11 10 9 37 37 H 0.96993 * 120.00537 * 180.02562 * 15 14 12 38 38 H 1.08998 * 109.49202 * 303.13910 * 20 10 9 39 39 H 1.09004 * 109.49452 * 183.06761 * 20 10 9 40 40 H 1.09000 * 109.62792 * 350.88751 * 21 7 5 41 41 H 1.08994 * 109.62907 * 111.47642 * 21 7 5 42 42 H 1.09004 * 109.51957 * 179.87220 * 22 2 1 43 43 H 1.09002 * 109.50365 * 302.38045 * 23 22 2 44 44 H 1.09001 * 109.50545 * 62.49675 * 23 22 2 45 45 H 1.09006 * 109.46269 * 299.15629 * 24 23 22 46 46 H 1.09000 * 109.46154 * 179.19451 * 24 23 22 47 47 H 1.00903 * 110.99895 * 62.35285 * 25 24 23 48 48 H 1.09002 * 109.46288 * 301.71996 * 26 25 24 49 49 H 1.09008 * 109.45379 * 181.74924 * 26 25 24 50 50 H 1.09004 * 109.50551 * 180.88224 * 27 26 25 51 51 H 1.08999 * 109.50640 * 60.76303 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3488 1.1692 -0.0928 5 6 1.3961 2.4589 0.1145 6 8 0.9385 2.9857 -0.8784 7 7 1.2393 3.0416 1.3197 8 6 1.8751 2.4769 2.5196 9 6 2.6464 3.6004 3.2304 10 7 1.7386 4.7277 3.4813 11 6 2.3869 5.7507 4.3126 12 6 2.6572 5.1866 5.6836 13 1 2.3761 4.1696 5.9142 14 6 3.2636 5.9687 6.6436 15 7 3.6065 7.2069 6.3627 16 14 3.5995 5.2692 8.3429 17 1 4.9442 4.6394 8.3619 18 1 3.5506 6.3624 9.3467 19 1 2.5707 4.2498 8.6706 20 6 1.2464 5.3056 2.2237 21 6 0.4226 4.2555 1.4706 22 6 2.1974 -1.2688 -0.0006 23 6 1.8224 -2.0756 -1.2468 24 6 2.5436 -3.4249 -1.2110 25 7 2.1568 -4.1562 0.0021 26 6 2.5494 -3.4226 1.2122 27 6 1.8283 -2.0733 1.2488 28 1 -0.3633 0.0926 -1.0235 29 1 -0.3634 -0.9326 0.4315 30 1 -0.3633 0.8401 0.5919 31 1 1.1105 2.0760 3.1849 32 1 2.5648 1.6841 2.2299 33 1 3.4729 3.9320 2.6018 34 1 3.0360 3.2292 4.1783 35 1 3.3276 6.0512 3.8513 36 1 1.7314 6.6174 4.3991 37 1 4.0334 7.7571 7.0379 38 1 2.0923 5.6135 1.6092 39 1 0.6206 6.1711 2.4414 40 1 0.1516 4.6392 0.4871 41 1 -0.4789 4.0222 2.0371 42 1 3.2693 -1.0706 -0.0028 43 1 0.7449 -2.2392 -1.2637 44 1 2.1217 -1.5265 -2.1395 45 1 3.6212 -3.2608 -1.2081 46 1 2.2675 -4.0076 -2.0899 47 1 1.1675 -4.3547 0.0047 48 1 3.6270 -3.2585 1.2038 49 1 2.2774 -4.0038 2.0934 50 1 2.1319 -1.5225 2.1391 51 1 0.7509 -2.2368 1.2712 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601583355.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:22 Heat of formation + Delta-G solvation = -73.981315 kcal Electronic energy + Delta-G solvation = -30858.080677 eV Core-core repulsion = 26791.514578 eV Total energy + Delta-G solvation = -4066.566100 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.28337 -40.67728 -39.44492 -38.88668 -36.60218 -36.16152 -34.46500 -32.42644 -31.86566 -31.85551 -30.19556 -28.26180 -27.73389 -26.08927 -24.85266 -24.14714 -23.91926 -23.24576 -21.82052 -20.95692 -19.95541 -19.05929 -18.52418 -18.34128 -17.92138 -16.98925 -16.76442 -16.31615 -16.27758 -16.07900 -15.86153 -15.65982 -15.50062 -15.40856 -15.31660 -14.99511 -14.47582 -14.38314 -14.10654 -14.04729 -13.83907 -13.61054 -13.44783 -13.21876 -13.12420 -12.94104 -12.80179 -12.68280 -12.64407 -12.47078 -12.37538 -12.20268 -12.18944 -11.82319 -11.72159 -11.58433 -11.31411 -10.84311 -10.63274 -10.06130 -9.95799 -9.38735 -9.16887 -8.21214 -6.31749 0.79608 0.87254 1.30159 1.43371 1.44237 1.55775 2.09613 2.40422 2.91560 3.08999 3.15875 3.39294 3.58873 3.75510 3.77291 3.90862 3.97122 4.08321 4.09455 4.09818 4.14045 4.29573 4.36491 4.39076 4.40176 4.45139 4.49982 4.59886 4.71314 4.74580 4.77208 4.84752 4.90945 4.91947 4.99212 5.02116 5.06755 5.10356 5.15544 5.16193 5.24828 5.28154 5.61709 5.84926 5.89363 5.99681 6.04819 6.18458 6.48983 6.51308 6.52512 6.55354 6.83602 7.38323 8.90280 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.014213 B = 0.002757 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.544299 B =10152.616056 C =11572.490853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.583 5.583 3 C 0.517 3.483 4 O -0.550 6.550 5 C 0.517 3.483 6 O -0.548 6.548 7 N -0.589 5.589 8 C 0.124 3.876 9 C 0.052 3.948 10 N -0.532 5.532 11 C 0.207 3.793 12 C -0.522 4.522 13 H 0.072 0.928 14 C 0.000 4.000 15 N -0.937 5.937 16 Si 0.971 3.029 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.258 1.258 20 C 0.038 3.962 21 C 0.126 3.874 22 C 0.134 3.866 23 C -0.157 4.157 24 C 0.064 3.936 25 N -0.688 5.688 26 C 0.063 3.937 27 C -0.158 4.158 28 H 0.069 0.931 29 H 0.114 0.886 30 H 0.068 0.932 31 H 0.109 0.891 32 H 0.085 0.915 33 H 0.006 0.994 34 H 0.091 0.909 35 H -0.045 1.045 36 H 0.011 0.989 37 H 0.264 0.736 38 H 0.010 0.990 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.106 0.894 42 H 0.077 0.923 43 H 0.086 0.914 44 H 0.059 0.941 45 H 0.064 0.936 46 H 0.094 0.906 47 H 0.352 0.648 48 H 0.065 0.935 49 H 0.095 0.905 50 H 0.069 0.931 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.838 -23.649 -12.260 28.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.316 5.316 3 C 0.300 3.700 4 O -0.428 6.428 5 C 0.300 3.700 6 O -0.425 6.425 7 N -0.322 5.322 8 C 0.001 3.999 9 C -0.077 4.077 10 N -0.256 5.256 11 C 0.081 3.919 12 C -0.560 4.560 13 H 0.090 0.910 14 C -0.198 4.198 15 N -0.577 5.577 16 Si 0.795 3.205 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.182 1.182 20 C -0.091 4.091 21 C 0.005 3.995 22 C 0.032 3.968 23 C -0.197 4.197 24 C -0.066 4.066 25 N -0.317 5.317 26 C -0.067 4.067 27 C -0.197 4.197 28 H 0.087 0.913 29 H 0.132 0.868 30 H 0.087 0.913 31 H 0.127 0.873 32 H 0.104 0.896 33 H 0.024 0.976 34 H 0.109 0.891 35 H -0.027 1.027 36 H 0.029 0.971 37 H 0.073 0.927 38 H 0.028 0.972 39 H 0.111 0.889 40 H 0.117 0.883 41 H 0.124 0.876 42 H 0.095 0.905 43 H 0.105 0.895 44 H 0.078 0.922 45 H 0.083 0.917 46 H 0.112 0.888 47 H 0.171 0.829 48 H 0.083 0.917 49 H 0.113 0.887 50 H 0.088 0.912 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.225 -23.815 -12.506 28.436 hybrid contribution 0.857 1.948 0.260 2.144 sum -8.367 -21.867 -12.246 26.422 Atomic orbital electron populations 1.22111 0.76749 1.05191 1.03323 1.48032 1.08707 1.04473 1.70349 1.20244 0.87381 0.85354 0.77051 1.90795 1.14539 1.86785 1.50664 1.20338 0.79591 0.86350 0.83718 1.90761 1.50069 1.65209 1.36494 1.48336 1.48987 1.27913 1.06989 1.22083 0.97509 0.95008 0.85268 1.22381 0.93050 0.92298 0.99959 1.62058 1.38629 1.10089 1.14843 1.19397 0.90523 0.89968 0.91971 1.21454 1.38340 0.99632 0.96552 0.91017 1.25954 0.95375 0.95072 1.03410 1.70091 1.42514 1.09024 1.36099 0.85358 0.78820 0.78076 0.78242 1.20092 1.21116 1.18199 1.22514 0.98276 0.97978 0.90352 1.21894 0.93474 0.82738 1.01429 1.21387 0.96924 0.81442 0.97082 1.22592 1.02597 0.97861 0.96650 1.21984 0.99757 0.91044 0.93836 1.60598 1.23580 1.45968 1.01590 1.22004 0.99806 0.91148 0.93789 1.22624 1.02748 0.97792 0.96586 0.91259 0.86807 0.91325 0.87322 0.89643 0.97604 0.89080 1.02693 0.97104 0.92738 0.97164 0.88880 0.88349 0.87564 0.90469 0.89525 0.92210 0.91714 0.88797 0.82915 0.91685 0.88652 0.91218 0.89266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.86 9.21 127.77 1.18 2.04 16 2 N -0.58 -11.22 2.77 -823.73 -2.28 -13.50 16 3 C 0.52 14.76 5.63 87.27 0.49 15.25 16 4 O -0.55 -19.60 16.22 -3.23 -0.05 -19.66 16 5 C 0.52 15.81 5.70 87.27 0.50 16.31 16 6 O -0.55 -19.23 16.55 -3.27 -0.05 -19.28 16 7 N -0.59 -16.98 3.00 -818.63 -2.46 -19.44 16 8 C 0.12 3.46 6.51 86.50 0.56 4.02 16 9 C 0.05 1.96 5.47 86.54 0.47 2.43 16 10 N -0.53 -21.88 4.62 -898.90 -4.15 -26.03 16 11 C 0.21 10.82 4.72 85.56 0.40 11.23 16 12 C -0.52 -28.39 8.41 25.60 0.22 -28.17 16 13 H 0.07 3.71 7.13 -2.91 -0.02 3.69 16 14 C 0.00 -0.01 5.46 84.66 0.46 0.46 16 15 N -0.94 -55.92 13.29 21.45 0.28 -55.63 16 16 Si 0.97 42.94 29.54 68.60 2.03 44.96 16 17 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 18 H -0.29 -12.50 7.11 99.48 0.71 -11.80 16 19 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 20 C 0.04 1.33 5.62 86.38 0.49 1.81 16 21 C 0.13 3.50 6.61 86.35 0.57 4.07 16 22 C 0.13 2.14 2.58 45.07 0.12 2.26 16 23 C -0.16 -1.86 5.39 30.64 0.17 -1.69 16 24 C 0.06 0.66 6.55 86.33 0.57 1.23 16 25 N -0.69 -6.54 6.87 -514.01 -3.53 -10.07 16 26 C 0.06 0.63 6.55 86.33 0.57 1.20 16 27 C -0.16 -1.71 5.39 30.64 0.17 -1.54 16 28 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.11 0.70 6.40 -2.39 -0.02 0.69 16 30 H 0.07 0.98 6.99 -2.39 -0.02 0.96 16 31 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 32 H 0.09 2.30 6.29 -2.39 -0.01 2.29 16 33 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 34 H 0.09 3.57 6.67 -2.39 -0.02 3.56 16 35 H -0.04 -2.61 8.12 -2.39 -0.02 -2.63 16 36 H 0.01 0.61 7.97 -2.38 -0.02 0.59 16 37 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 38 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 39 H 0.09 3.10 7.99 -2.39 -0.02 3.09 16 40 H 0.10 2.67 7.04 -2.39 -0.02 2.65 16 41 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 42 H 0.08 1.71 6.91 -2.38 -0.02 1.70 16 43 H 0.09 0.72 7.59 -2.39 -0.02 0.70 16 44 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 46 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.35 2.13 8.86 -89.69 -0.79 1.33 16 48 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.10 0.75 8.14 -2.38 -0.02 0.73 16 50 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 51 H 0.09 0.63 6.59 -2.39 -0.02 0.61 16 Total: -1.00 -72.97 396.41 -3.16 -76.13 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: 0.13 Total: 11.61 kcal Atomic # 6 Polarization: 23.99 SS G_CDS: 6.92 Total: 30.91 kcal Atomic # 7 Polarization: -112.53 SS G_CDS: -12.13 Total: -124.67 kcal Atomic # 8 Polarization: -38.83 SS G_CDS: -0.11 Total: -38.94 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Total: -72.97 -3.16 -76.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601583355.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.149 kcal (2) G-P(sol) polarization free energy of solvation -72.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds