Wall clock time and date at job start Tue Mar 31 2020 20:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46893 * 110.99882 * 2 1 4 4 C 1.53008 * 109.46989 * 185.04586 * 3 2 1 5 5 H 1.08995 * 109.87206 * 306.04859 * 4 3 2 6 6 C 1.54324 * 110.01084 * 67.14673 * 4 3 2 7 7 C 1.55157 * 102.94172 * 141.67935 * 6 4 3 8 8 C 1.55122 * 101.48830 * 324.33589 * 7 6 4 9 9 N 1.47027 * 109.88099 * 185.03270 * 4 3 2 10 10 C 1.34770 * 125.65095 * 61.45127 * 9 4 3 11 11 O 1.21346 * 119.99983 * 5.12741 * 10 9 4 12 12 C 1.49452 * 120.00143 * 185.12934 * 10 9 4 13 13 O 1.21348 * 119.99772 * 353.96829 * 12 10 9 14 14 N 1.34781 * 120.00110 * 173.96372 * 12 10 9 15 15 C 1.47078 * 120.88007 * 353.55953 * 14 12 10 16 16 C 1.53242 * 108.52362 * 128.78845 * 15 14 12 17 17 N 1.46901 * 109.33736 * 53.82505 * 16 15 14 18 18 C 1.46902 * 110.99681 * 172.74748 * 17 16 15 19 19 C 1.50697 * 109.47079 * 72.58640 * 18 17 16 20 20 H 1.08000 * 119.99996 * 4.48222 * 19 18 17 21 21 C 1.37877 * 119.99883 * 184.48480 * 19 18 17 22 22 N 1.31516 * 120.00142 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00050 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47049 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47323 * 120.00082 * 23 21 19 26 26 H 1.48502 * 109.46987 * 239.99940 * 23 21 19 27 27 C 1.46899 * 111.26918 * 296.89847 * 17 16 15 28 28 C 1.47077 * 120.88014 * 173.53092 * 14 12 10 29 29 H 1.09004 * 109.46931 * 60.00430 * 1 2 3 30 30 H 1.09001 * 109.46811 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.46941 * 300.00015 * 1 2 3 32 32 H 1.00902 * 111.00053 * 123.95573 * 2 1 3 33 33 H 1.09001 * 109.47306 * 65.04755 * 3 2 1 34 34 H 1.09001 * 109.47655 * 305.04608 * 3 2 1 35 35 H 1.08998 * 110.71774 * 260.04484 * 6 4 3 36 36 H 1.09005 * 110.72176 * 23.14134 * 6 4 3 37 37 H 1.08999 * 111.00017 * 82.57394 * 7 6 4 38 38 H 1.09000 * 111.00540 * 206.42123 * 7 6 4 39 39 H 1.09002 * 110.49455 * 278.45114 * 8 7 6 40 40 H 1.08995 * 110.34555 * 156.05971 * 8 7 6 41 41 H 1.09007 * 109.62987 * 9.07721 * 15 14 12 42 42 H 1.08999 * 109.78912 * 248.59109 * 15 14 12 43 43 H 1.08991 * 109.49509 * 173.78644 * 16 15 14 44 44 H 1.08999 * 109.49059 * 293.87118 * 16 15 14 45 45 H 1.09009 * 109.46581 * 192.58527 * 18 17 16 46 46 H 1.09001 * 109.47242 * 312.57857 * 18 17 16 47 47 H 0.97001 * 120.00092 * 179.97438 * 22 21 19 48 48 H 1.08995 * 109.49565 * 303.14173 * 27 17 16 49 49 H 1.09007 * 109.51242 * 183.07677 * 27 17 16 50 50 H 1.08997 * 109.63154 * 350.91599 * 28 14 12 51 51 H 1.08994 * 109.62824 * 111.50206 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5197 1.3326 -0.1269 5 1 3.9401 0.6943 0.6503 6 6 3.9204 0.7986 -1.5182 7 6 5.1505 1.6706 -1.8841 8 6 4.7564 3.0366 -1.2635 9 7 4.0662 2.6922 -0.0071 10 6 3.9504 3.4933 1.0705 11 8 3.4349 3.0738 2.0857 12 6 4.4569 4.8983 1.0151 13 8 5.0693 5.2845 0.0413 14 7 4.2333 5.7364 2.0467 15 6 3.3757 5.3359 3.1724 16 6 4.1365 5.5897 4.4783 17 7 4.5938 6.9853 4.5114 18 6 5.1769 7.3172 5.8183 19 6 6.5191 6.6458 5.9545 20 1 6.9334 6.0935 5.1240 21 6 7.2182 6.7365 7.1395 22 7 6.7139 7.4094 8.1506 23 14 8.8816 5.9036 7.3086 24 1 9.2228 5.2167 6.0371 25 1 9.9172 6.9235 7.6130 26 1 8.8275 4.9091 8.4101 27 6 5.5441 7.2607 3.4256 28 6 4.8410 7.0754 2.0767 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8306 -0.5262 0.7814 33 1 1.7209 1.8660 0.9317 34 1 1.5747 1.9221 -0.8413 35 1 4.1969 -0.2543 -1.4622 36 1 3.1127 0.9461 -2.2352 37 1 6.0582 1.2772 -1.4266 38 1 5.2637 1.7526 -2.9651 39 1 4.0846 3.5785 -1.9292 40 1 5.6470 3.6299 -1.0568 41 1 3.1338 4.2763 3.0896 42 1 2.4573 5.9229 3.1637 43 1 3.4770 5.4028 5.3256 44 1 4.9974 4.9235 4.5330 45 1 5.3013 8.3973 5.8968 46 1 4.5143 6.9692 6.6108 47 1 7.2056 7.4729 8.9844 48 1 6.3854 6.5712 3.4950 49 1 5.9058 8.2855 3.5095 50 1 5.5679 7.1659 1.2696 51 1 4.0652 7.8322 1.9611 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601584244.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:29 Heat of formation + Delta-G solvation = -25.861287 kcal Electronic energy + Delta-G solvation = -30894.591302 eV Core-core repulsion = 26830.111843 eV Total energy + Delta-G solvation = -4064.479459 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.10921 -39.40954 -37.85755 -37.57688 -35.99401 -34.44873 -32.33275 -31.88355 -30.75313 -30.45466 -28.38685 -26.31831 -25.94697 -24.83330 -23.66301 -23.10160 -22.43336 -21.92150 -21.00352 -19.86752 -18.90865 -17.35562 -17.16663 -16.67754 -16.24379 -16.16307 -15.63823 -15.39449 -14.83321 -14.79911 -14.58674 -14.51932 -14.37867 -13.91674 -13.69256 -13.61361 -13.37936 -13.35553 -13.03356 -12.71554 -12.67378 -12.40438 -12.08879 -11.98599 -11.84834 -11.58296 -11.32966 -11.19926 -11.15333 -11.04797 -11.01518 -10.77257 -10.65238 -10.48099 -10.22422 -9.92985 -9.61555 -9.12101 -8.89843 -8.78967 -8.52537 -8.45509 -7.23988 -6.06508 -4.15732 1.40568 2.17614 3.19441 3.24350 3.32631 3.32897 3.36549 3.95379 4.10507 4.27374 4.38081 4.42349 4.53708 4.84577 4.95236 4.99372 5.01700 5.05145 5.20729 5.24077 5.34011 5.41242 5.43899 5.53657 5.54541 5.56480 5.60791 5.63749 5.71292 5.72665 5.82443 5.91539 5.92526 5.96401 6.02684 6.28604 6.46695 6.51775 6.62289 6.63486 6.73611 6.93942 7.02951 7.20995 7.40352 7.49126 7.67833 7.86043 7.96631 8.03147 8.18320 8.27054 8.94471 9.51790 10.98757 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.014493 B = 0.002736 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.538093 B =10231.669548 C =10374.327375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.690 5.690 3 C 0.046 3.954 4 C 0.138 3.862 5 H 0.081 0.919 6 C -0.112 4.112 7 C -0.140 4.140 8 C 0.099 3.901 9 N -0.588 5.588 10 C 0.526 3.474 11 O -0.506 6.506 12 C 0.506 3.494 13 O -0.531 6.531 14 N -0.567 5.567 15 C 0.053 3.947 16 C 0.054 3.946 17 N -0.543 5.543 18 C 0.187 3.813 19 C -0.551 4.551 20 H 0.058 0.942 21 C 0.065 3.935 22 N -0.890 5.890 23 Si 0.888 3.112 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.283 1.283 27 C 0.051 3.949 28 C 0.111 3.889 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.024 0.976 32 H 0.343 0.657 33 H 0.047 0.953 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.101 0.899 41 H 0.149 0.851 42 H 0.066 0.934 43 H 0.077 0.923 44 H 0.039 0.961 45 H 0.031 0.969 46 H 0.034 0.966 47 H 0.262 0.738 48 H 0.045 0.955 49 H 0.082 0.918 50 H 0.088 0.912 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.390 -12.867 -20.441 25.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.321 5.321 3 C -0.084 4.084 4 C 0.034 3.966 5 H 0.099 0.901 6 C -0.150 4.150 7 C -0.178 4.178 8 C -0.023 4.023 9 N -0.322 5.322 10 C 0.311 3.689 11 O -0.383 6.383 12 C 0.288 3.712 13 O -0.409 6.409 14 N -0.299 5.299 15 C -0.068 4.068 16 C -0.076 4.076 17 N -0.267 5.267 18 C 0.062 3.938 19 C -0.590 4.590 20 H 0.076 0.924 21 C -0.137 4.137 22 N -0.529 5.529 23 Si 0.716 3.284 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.209 1.209 27 C -0.078 4.078 28 C -0.011 4.011 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.042 0.958 32 H 0.161 0.839 33 H 0.065 0.935 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.104 0.896 39 H 0.091 0.909 40 H 0.119 0.881 41 H 0.165 0.835 42 H 0.084 0.916 43 H 0.096 0.904 44 H 0.058 0.942 45 H 0.049 0.951 46 H 0.052 0.948 47 H 0.072 0.928 48 H 0.063 0.937 49 H 0.100 0.900 50 H 0.106 0.894 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.687 -12.511 -20.893 26.208 hybrid contribution 1.492 -0.497 1.510 2.180 sum -8.195 -13.008 -19.382 24.740 Atomic orbital electron populations 1.22177 0.87393 1.01947 1.00598 1.60327 1.08047 1.13658 1.50030 1.22322 0.94080 0.90303 1.01724 1.21620 0.93211 0.82600 0.99144 0.90140 1.22573 0.97817 0.99989 0.94625 1.22949 0.98492 0.94854 1.01509 1.22694 0.98423 0.97156 0.84054 1.48366 1.53566 1.15384 1.14883 1.20103 0.79677 0.86752 0.82403 1.90347 1.44439 1.74604 1.28957 1.19766 0.81730 0.86007 0.83705 1.90677 1.41910 1.76754 1.31595 1.48091 1.46671 1.15149 1.20036 1.23441 0.92449 1.06247 0.84635 1.22199 0.98721 0.90937 0.95694 1.62527 1.38514 1.19844 1.05846 1.19770 0.93114 0.96678 0.84264 1.21809 1.04722 1.33743 0.98772 0.92400 1.24961 0.97894 0.95103 0.95769 1.69951 1.38328 1.41069 1.03503 0.86594 0.84255 0.79420 0.78100 1.19898 1.20866 1.20895 1.22256 0.94284 1.01969 0.89323 1.22046 0.97950 0.81841 0.99224 0.91754 0.91250 0.95765 0.83940 0.93488 0.90766 0.89694 0.90117 0.90489 0.89581 0.90920 0.88051 0.83527 0.91586 0.90419 0.94239 0.95139 0.94797 0.92822 0.93657 0.90009 0.89366 0.90772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.69 60.07 0.64 0.84 16 2 N -0.69 -5.36 6.63 -121.13 -0.80 -6.17 16 3 C 0.05 0.42 5.08 -3.82 -0.02 0.41 16 4 C 0.14 1.29 3.06 -66.95 -0.20 1.08 16 5 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 6 C -0.11 -0.78 6.29 -24.90 -0.16 -0.93 16 7 C -0.14 -0.97 7.10 -24.47 -0.17 -1.15 16 8 C 0.10 0.97 6.00 -2.41 -0.01 0.95 16 9 N -0.59 -6.81 3.06 -163.38 -0.50 -7.31 16 10 C 0.53 7.64 7.53 -11.59 -0.09 7.55 16 11 O -0.51 -8.00 12.27 5.50 0.07 -7.94 16 12 C 0.51 8.08 7.72 -11.58 -0.09 7.99 16 13 O -0.53 -8.78 13.34 5.50 0.07 -8.71 16 14 N -0.57 -9.42 3.01 -172.97 -0.52 -9.94 16 15 C 0.05 0.88 6.46 -3.60 -0.02 0.86 16 16 C 0.05 1.06 5.35 -3.70 -0.02 1.04 16 17 N -0.54 -11.58 4.83 -235.76 -1.14 -12.72 16 18 C 0.19 4.78 5.19 -4.98 -0.03 4.75 16 19 C -0.55 -15.16 7.88 -34.44 -0.27 -15.43 16 20 H 0.06 1.60 5.87 -52.49 -0.31 1.29 16 21 C 0.07 1.84 5.46 -17.82 -0.10 1.75 16 22 N -0.89 -26.12 13.29 55.43 0.74 -25.39 16 23 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 24 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 27 C 0.05 0.99 5.01 -3.70 -0.02 0.98 16 28 C 0.11 1.82 6.58 -3.60 -0.02 1.80 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.02 0.18 8.14 -51.93 -0.42 -0.25 16 32 H 0.34 2.47 8.87 -39.29 -0.35 2.12 16 33 H 0.05 0.54 6.87 -51.93 -0.36 0.18 16 34 H 0.07 0.69 8.02 -51.93 -0.42 0.27 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.54 7.78 -51.93 -0.40 0.14 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.10 1.17 6.30 -51.93 -0.33 0.84 16 41 H 0.15 2.42 3.80 -56.67 -0.22 2.20 16 42 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.08 1.51 7.96 -51.93 -0.41 1.09 16 44 H 0.04 0.87 7.62 -51.93 -0.40 0.47 16 45 H 0.03 0.83 8.14 -51.92 -0.42 0.40 16 46 H 0.03 0.93 7.92 -51.93 -0.41 0.52 16 47 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 48 H 0.05 0.99 6.27 -51.93 -0.33 0.66 16 49 H 0.08 1.57 8.11 -51.92 -0.42 1.15 16 50 H 0.09 1.39 7.11 -51.93 -0.37 1.02 16 51 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 393.06 15.07 5.92 5.92 Total: -1.00 -30.73 393.06 -10.26 -41.00 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -8.50 Total: 2.18 kcal Atomic # 6 Polarization: 13.07 SS G_CDS: -0.58 Total: 12.48 kcal Atomic # 7 Polarization: -59.30 SS G_CDS: -2.23 Total: -61.52 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: 0.14 Total: -16.65 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.73 -10.26 -41.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601584244.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.135 kcal (2) G-P(sol) polarization free energy of solvation -30.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds