Wall clock time and date at job start Tue Mar 31 2020 20:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46893 * 110.99882 * 2 1 4 4 C 1.53008 * 109.46989 * 185.04586 * 3 2 1 5 5 H 1.08995 * 109.87206 * 306.04859 * 4 3 2 6 6 C 1.54324 * 110.01084 * 67.14673 * 4 3 2 7 7 C 1.55157 * 102.94172 * 141.67935 * 6 4 3 8 8 C 1.55122 * 101.48830 * 324.33589 * 7 6 4 9 9 N 1.47027 * 109.88099 * 185.03270 * 4 3 2 10 10 C 1.34770 * 125.65095 * 61.45127 * 9 4 3 11 11 O 1.21346 * 119.99983 * 5.12741 * 10 9 4 12 12 C 1.49452 * 120.00143 * 185.12934 * 10 9 4 13 13 O 1.21348 * 119.99772 * 353.96829 * 12 10 9 14 14 N 1.34781 * 120.00110 * 173.96372 * 12 10 9 15 15 C 1.47078 * 120.88007 * 353.55953 * 14 12 10 16 16 C 1.53242 * 108.52362 * 128.78845 * 15 14 12 17 17 N 1.46901 * 109.33736 * 53.82505 * 16 15 14 18 18 C 1.46902 * 110.99681 * 172.74748 * 17 16 15 19 19 C 1.50697 * 109.47079 * 72.58640 * 18 17 16 20 20 H 1.08000 * 119.99996 * 4.48222 * 19 18 17 21 21 C 1.37877 * 119.99883 * 184.48480 * 19 18 17 22 22 N 1.31516 * 120.00142 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00050 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47049 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47323 * 120.00082 * 23 21 19 26 26 H 1.48502 * 109.46987 * 239.99940 * 23 21 19 27 27 C 1.46899 * 111.26918 * 296.89847 * 17 16 15 28 28 C 1.47077 * 120.88014 * 173.53092 * 14 12 10 29 29 H 1.09004 * 109.46931 * 60.00430 * 1 2 3 30 30 H 1.09001 * 109.46811 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.46941 * 300.00015 * 1 2 3 32 32 H 1.00902 * 111.00053 * 123.95573 * 2 1 3 33 33 H 1.09001 * 109.47306 * 65.04755 * 3 2 1 34 34 H 1.09001 * 109.47655 * 305.04608 * 3 2 1 35 35 H 1.08998 * 110.71774 * 260.04484 * 6 4 3 36 36 H 1.09005 * 110.72176 * 23.14134 * 6 4 3 37 37 H 1.08999 * 111.00017 * 82.57394 * 7 6 4 38 38 H 1.09000 * 111.00540 * 206.42123 * 7 6 4 39 39 H 1.09002 * 110.49455 * 278.45114 * 8 7 6 40 40 H 1.08995 * 110.34555 * 156.05971 * 8 7 6 41 41 H 1.09007 * 109.62987 * 9.07721 * 15 14 12 42 42 H 1.08999 * 109.78912 * 248.59109 * 15 14 12 43 43 H 1.08991 * 109.49509 * 173.78644 * 16 15 14 44 44 H 1.08999 * 109.49059 * 293.87118 * 16 15 14 45 45 H 1.09009 * 109.46581 * 192.58527 * 18 17 16 46 46 H 1.09001 * 109.47242 * 312.57857 * 18 17 16 47 47 H 0.97001 * 120.00092 * 179.97438 * 22 21 19 48 48 H 1.08995 * 109.49565 * 303.14173 * 27 17 16 49 49 H 1.09007 * 109.51242 * 183.07677 * 27 17 16 50 50 H 1.08997 * 109.63154 * 350.91599 * 28 14 12 51 51 H 1.08994 * 109.62824 * 111.50206 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5197 1.3326 -0.1269 5 1 3.9401 0.6943 0.6503 6 6 3.9204 0.7986 -1.5182 7 6 5.1505 1.6706 -1.8841 8 6 4.7564 3.0366 -1.2635 9 7 4.0662 2.6922 -0.0071 10 6 3.9504 3.4933 1.0705 11 8 3.4349 3.0738 2.0857 12 6 4.4569 4.8983 1.0151 13 8 5.0693 5.2845 0.0413 14 7 4.2333 5.7364 2.0467 15 6 3.3757 5.3359 3.1724 16 6 4.1365 5.5897 4.4783 17 7 4.5938 6.9853 4.5114 18 6 5.1769 7.3172 5.8183 19 6 6.5191 6.6458 5.9545 20 1 6.9334 6.0935 5.1240 21 6 7.2182 6.7365 7.1395 22 7 6.7139 7.4094 8.1506 23 14 8.8816 5.9036 7.3086 24 1 9.2228 5.2167 6.0371 25 1 9.9172 6.9235 7.6130 26 1 8.8275 4.9091 8.4101 27 6 5.5441 7.2607 3.4256 28 6 4.8410 7.0754 2.0767 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8306 -0.5262 0.7814 33 1 1.7209 1.8660 0.9317 34 1 1.5747 1.9221 -0.8413 35 1 4.1969 -0.2543 -1.4622 36 1 3.1127 0.9461 -2.2352 37 1 6.0582 1.2772 -1.4266 38 1 5.2637 1.7526 -2.9651 39 1 4.0846 3.5785 -1.9292 40 1 5.6470 3.6299 -1.0568 41 1 3.1338 4.2763 3.0896 42 1 2.4573 5.9229 3.1637 43 1 3.4770 5.4028 5.3256 44 1 4.9974 4.9235 4.5330 45 1 5.3013 8.3973 5.8968 46 1 4.5143 6.9692 6.6108 47 1 7.2056 7.4729 8.9844 48 1 6.3854 6.5712 3.4950 49 1 5.9058 8.2855 3.5095 50 1 5.5679 7.1659 1.2696 51 1 4.0652 7.8322 1.9611 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601584244.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:27 Heat of formation + Delta-G solvation = -48.884438 kcal Electronic energy + Delta-G solvation = -30895.589661 eV Core-core repulsion = 26830.111843 eV Total energy + Delta-G solvation = -4065.477817 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.24178 -40.54182 -39.08598 -38.90088 -36.71208 -36.04139 -34.34912 -32.74420 -32.18688 -31.20498 -30.12490 -27.63587 -26.94459 -26.24725 -24.81563 -24.28651 -23.82162 -23.03254 -22.06987 -21.07548 -20.21581 -18.61600 -18.39236 -18.15496 -17.56764 -17.28756 -16.76451 -16.63562 -16.32139 -16.08922 -15.87569 -15.56008 -15.48634 -15.27794 -15.12076 -14.90445 -14.35611 -14.31745 -14.15738 -13.85099 -13.70110 -13.61682 -13.43256 -13.10568 -12.94887 -12.84268 -12.74408 -12.61202 -12.55859 -12.52175 -12.23542 -12.07466 -11.86563 -11.84917 -11.69224 -11.61375 -11.52521 -10.66358 -10.22613 -9.99734 -9.85485 -9.48060 -9.10239 -8.21063 -6.40131 0.21109 1.09514 1.31249 1.32962 1.44136 1.99430 2.20863 2.32664 2.96790 3.04390 3.26308 3.32471 3.59603 3.67495 3.86751 3.95541 4.05347 4.20184 4.23847 4.27641 4.30900 4.35308 4.47064 4.49441 4.56946 4.61587 4.66127 4.67812 4.79239 4.81840 4.93667 4.97978 4.99647 5.01540 5.02956 5.10449 5.12566 5.16276 5.22468 5.29817 5.33757 5.40538 5.69041 5.84380 5.92057 6.00145 6.12069 6.21552 6.33170 6.40416 6.51796 6.79387 6.81465 7.31582 8.82023 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.014493 B = 0.002736 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.538093 B =10231.669548 C =10374.327375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.686 5.686 3 C 0.055 3.945 4 C 0.132 3.868 5 H 0.074 0.926 6 C -0.101 4.101 7 C -0.129 4.129 8 C 0.092 3.908 9 N -0.581 5.581 10 C 0.521 3.479 11 O -0.526 6.526 12 C 0.504 3.496 13 O -0.536 6.536 14 N -0.577 5.577 15 C 0.068 3.932 16 C 0.057 3.943 17 N -0.538 5.538 18 C 0.200 3.800 19 C -0.560 4.560 20 H 0.052 0.948 21 C 0.015 3.985 22 N -0.923 5.923 23 Si 0.955 3.045 24 H -0.273 1.273 25 H -0.274 1.274 26 H -0.277 1.277 27 C 0.054 3.946 28 C 0.122 3.878 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.016 0.984 32 H 0.347 0.653 33 H 0.021 0.979 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.111 0.889 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.154 0.846 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.011 0.989 45 H 0.010 0.990 46 H 0.010 0.990 47 H 0.266 0.734 48 H 0.019 0.981 49 H 0.082 0.918 50 H 0.098 0.902 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.364 -14.473 -22.809 28.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.317 5.317 3 C -0.075 4.075 4 C 0.030 3.970 5 H 0.092 0.908 6 C -0.139 4.139 7 C -0.167 4.167 8 C -0.029 4.029 9 N -0.313 5.313 10 C 0.305 3.695 11 O -0.405 6.405 12 C 0.287 3.713 13 O -0.415 6.415 14 N -0.309 5.309 15 C -0.053 4.053 16 C -0.072 4.072 17 N -0.262 5.262 18 C 0.074 3.926 19 C -0.599 4.599 20 H 0.070 0.930 21 C -0.185 4.185 22 N -0.562 5.562 23 Si 0.780 3.220 24 H -0.198 1.198 25 H -0.199 1.199 26 H -0.202 1.202 27 C -0.075 4.075 28 C 0.000 4.000 29 H 0.086 0.914 30 H 0.102 0.898 31 H 0.034 0.966 32 H 0.164 0.836 33 H 0.039 0.961 34 H 0.094 0.906 35 H 0.118 0.882 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.129 0.871 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.170 0.830 42 H 0.100 0.900 43 H 0.095 0.905 44 H 0.030 0.970 45 H 0.028 0.972 46 H 0.028 0.972 47 H 0.075 0.925 48 H 0.037 0.963 49 H 0.101 0.899 50 H 0.116 0.884 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.662 -14.140 -23.313 28.928 hybrid contribution 1.462 -0.022 2.185 2.629 sum -8.199 -14.163 -21.128 26.725 Atomic orbital electron populations 1.22230 0.86697 1.02871 1.00356 1.60359 1.08661 1.12544 1.50098 1.22176 0.93976 0.90968 1.00411 1.21834 0.93231 0.81212 1.00728 0.90809 1.22558 0.97940 1.00572 0.92806 1.22939 0.98329 0.92664 1.02759 1.22849 0.97699 0.98943 0.83422 1.48493 1.52549 1.15791 1.14514 1.19840 0.80075 0.86468 0.83100 1.90317 1.45681 1.74723 1.29823 1.20067 0.81313 0.86561 0.83339 1.90672 1.41989 1.77062 1.31756 1.48151 1.47000 1.15396 1.20345 1.23316 0.92193 1.07011 0.82747 1.22206 0.97938 0.89168 0.97878 1.62475 1.38338 1.20917 1.04461 1.19442 0.92223 0.95079 0.85881 1.22010 1.05518 1.33619 0.98729 0.92976 1.25770 1.01561 0.95714 0.95466 1.70055 1.39911 1.42205 1.04054 0.85558 0.79861 0.78535 0.78031 1.19775 1.19941 1.20213 1.22252 0.93507 1.01247 0.90464 1.21927 0.98474 0.82487 0.97079 0.91450 0.89759 0.96560 0.83578 0.96112 0.90587 0.88224 0.89283 0.90508 0.87103 0.90092 0.89886 0.82970 0.90041 0.90523 0.97045 0.97163 0.97172 0.92475 0.96322 0.89933 0.88412 0.88925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.69 127.69 1.37 1.70 16 2 N -0.69 -9.53 6.63 -537.14 -3.56 -13.09 16 3 C 0.06 0.96 5.08 86.31 0.44 1.39 16 4 C 0.13 2.28 3.06 45.34 0.14 2.42 16 5 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 6 C -0.10 -1.10 6.29 31.78 0.20 -0.90 16 7 C -0.13 -1.42 7.10 32.06 0.23 -1.19 16 8 C 0.09 1.64 6.00 86.93 0.52 2.17 16 9 N -0.58 -12.83 3.06 -789.18 -2.42 -15.25 16 10 C 0.52 14.91 7.53 87.27 0.66 15.57 16 11 O -0.53 -16.64 12.27 -3.23 -0.04 -16.68 16 12 C 0.50 15.81 7.72 87.27 0.67 16.48 16 13 O -0.54 -17.24 13.34 -3.24 -0.04 -17.28 16 14 N -0.58 -18.82 3.01 -819.52 -2.47 -21.29 16 15 C 0.07 2.24 6.46 86.35 0.56 2.80 16 16 C 0.06 2.31 5.35 86.38 0.46 2.77 16 17 N -0.54 -23.45 4.83 -899.81 -4.35 -27.80 16 18 C 0.20 10.61 5.19 85.56 0.44 11.06 16 19 C -0.56 -31.58 7.88 25.60 0.20 -31.38 16 20 H 0.05 2.96 5.87 -2.91 -0.02 2.95 16 21 C 0.01 0.84 5.46 84.65 0.46 1.30 16 22 N -0.92 -55.09 13.29 21.45 0.28 -54.81 16 23 Si 0.95 44.76 29.54 68.60 2.03 46.79 16 24 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 25 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 26 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 27 C 0.05 2.15 5.01 86.38 0.43 2.58 16 28 C 0.12 3.90 6.58 86.35 0.57 4.47 16 29 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.02 0.22 8.14 -2.39 -0.02 0.20 16 32 H 0.35 4.51 8.87 -89.69 -0.80 3.71 16 33 H 0.02 0.47 6.87 -2.39 -0.02 0.46 16 34 H 0.08 1.29 8.02 -2.39 -0.02 1.27 16 35 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.09 0.88 7.78 -2.38 -0.02 0.86 16 37 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.08 1.83 6.30 -2.39 -0.02 1.81 16 41 H 0.15 5.01 3.80 -77.49 -0.29 4.72 16 42 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 43 H 0.08 3.06 7.96 -2.39 -0.02 3.04 16 44 H 0.01 0.52 7.62 -2.39 -0.02 0.50 16 45 H 0.01 0.58 8.14 -2.38 -0.02 0.56 16 46 H 0.01 0.58 7.92 -2.39 -0.02 0.56 16 47 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 48 H 0.02 0.83 6.27 -2.39 -0.01 0.82 16 49 H 0.08 3.21 8.11 -2.38 -0.02 3.19 16 50 H 0.10 2.96 7.11 -2.39 -0.02 2.95 16 51 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -66.96 393.06 -3.36 -70.32 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -0.15 Total: 17.86 kcal Atomic # 6 Polarization: 23.88 SS G_CDS: 7.35 Total: 31.24 kcal Atomic # 7 Polarization: -119.73 SS G_CDS: -12.51 Total: -132.24 kcal Atomic # 8 Polarization: -33.88 SS G_CDS: -0.08 Total: -33.96 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -66.96 -3.36 -70.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601584244.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.432 kcal (2) G-P(sol) polarization free energy of solvation -66.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds