Wall clock time and date at job start Tue Mar 31 2020 20:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46903 * 110.99832 * 2 1 4 4 C 1.52996 * 109.47136 * 184.68868 * 3 2 1 5 5 H 1.09004 * 109.87314 * 64.91036 * 4 3 2 6 6 C 1.54321 * 109.88594 * 303.89312 * 4 3 2 7 7 C 1.55156 * 102.94491 * 218.23594 * 6 4 3 8 8 C 1.54906 * 101.58184 * 35.49659 * 7 6 4 9 9 N 1.47020 * 110.01058 * 186.00382 * 4 3 2 10 10 C 1.34773 * 125.65392 * 298.38860 * 9 4 3 11 11 O 1.21355 * 119.99413 * 3.87020 * 10 9 4 12 12 C 1.49451 * 120.00488 * 183.87561 * 10 9 4 13 13 O 1.21351 * 119.99480 * 6.27585 * 12 10 9 14 14 N 1.34773 * 119.99905 * 186.28272 * 12 10 9 15 15 C 1.47077 * 120.88298 * 6.65342 * 14 12 10 16 16 C 1.53699 * 108.27820 * 128.75480 * 15 14 12 17 17 N 1.46904 * 109.25676 * 54.08143 * 16 15 14 18 18 C 1.46892 * 110.99976 * 172.61093 * 17 16 15 19 19 C 1.50694 * 109.47662 * 59.36759 * 18 17 16 20 20 H 1.08007 * 119.99701 * 5.13189 * 19 18 17 21 21 C 1.37878 * 120.00514 * 185.13830 * 19 18 17 22 22 N 1.31509 * 120.00353 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99746 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.46983 * 90.00224 * 23 21 19 25 25 H 1.48492 * 109.47156 * 210.00271 * 23 21 19 26 26 H 1.48500 * 109.47013 * 330.00272 * 23 21 19 27 27 C 1.46899 * 111.26893 * 296.75937 * 17 16 15 28 28 C 1.47084 * 120.87654 * 186.92953 * 14 12 10 29 29 H 1.09001 * 109.46995 * 59.99692 * 1 2 3 30 30 H 1.09002 * 109.47028 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46844 * 299.99510 * 1 2 3 32 32 H 1.00901 * 110.99960 * 236.05093 * 2 1 3 33 33 H 1.09004 * 109.46516 * 64.69241 * 3 2 1 34 34 H 1.08996 * 109.47346 * 304.69419 * 3 2 1 35 35 H 1.08999 * 110.72337 * 99.86679 * 6 4 3 36 36 H 1.09001 * 110.71925 * 336.59802 * 6 4 3 37 37 H 1.09003 * 111.00809 * 153.57697 * 7 6 4 38 38 H 1.09007 * 111.00002 * 277.42549 * 7 6 4 39 39 H 1.09011 * 110.36333 * 81.83103 * 8 7 6 40 40 H 1.08997 * 110.37020 * 204.15041 * 8 7 6 41 41 H 1.08996 * 109.62810 * 248.51959 * 15 14 12 42 42 H 1.08995 * 109.62748 * 9.10144 * 15 14 12 43 43 H 1.08997 * 109.65043 * 294.08147 * 16 15 14 44 44 H 1.08996 * 109.44334 * 173.95535 * 16 15 14 45 45 H 1.09007 * 109.47013 * 179.36917 * 18 17 16 46 46 H 1.09006 * 109.46979 * 299.36447 * 18 17 16 47 47 H 0.96995 * 120.00121 * 179.97438 * 22 21 19 48 48 H 1.09005 * 109.49309 * 303.14568 * 27 17 16 49 49 H 1.08993 * 109.52010 * 183.07943 * 27 17 16 50 50 H 1.08994 * 109.63011 * 350.89393 * 28 14 12 51 51 H 1.09001 * 109.62252 * 111.28482 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5204 1.3324 -0.1179 5 1 3.8068 0.9158 -1.0836 6 6 4.1131 0.4751 1.0202 7 6 5.4018 1.2494 1.4036 8 6 4.9522 2.7186 1.2062 9 7 4.0709 2.6882 0.0248 10 6 3.8134 3.7304 -0.7901 11 8 3.0153 3.6093 -1.6962 12 6 4.5107 5.0351 -0.5778 13 8 5.3903 5.1247 0.2534 14 7 4.1625 6.1120 -1.3094 15 6 3.0059 6.0665 -2.2167 16 6 2.1054 7.2740 -1.9109 17 7 2.9039 8.5048 -1.9847 18 6 2.0494 9.6942 -1.8721 19 6 1.3113 9.6601 -0.5587 20 1 1.5232 8.8820 0.1597 21 6 0.3655 10.6222 -0.2741 22 7 -0.2789 10.5921 0.8719 23 14 -0.0005 11.9684 -1.5164 24 1 -1.0882 11.5222 -2.4237 25 1 -0.4253 13.1989 -0.8020 26 1 1.2210 12.2540 -2.3110 27 6 3.9601 8.5169 -0.9638 28 6 4.9329 7.3622 -1.2262 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8306 -0.5261 -0.7814 33 1 1.7154 1.8680 0.9291 34 1 1.5796 1.9203 -0.8449 35 1 4.3563 -0.5255 0.6627 36 1 3.4260 0.4275 1.8650 37 1 5.6767 1.0610 2.4414 38 1 6.2227 0.9985 0.7319 39 1 4.4026 3.0678 2.0805 40 1 5.8152 3.3577 1.0195 41 1 3.3490 6.1143 -3.2501 42 1 2.4498 5.1431 -2.0550 43 1 1.6843 7.1731 -0.9106 44 1 1.2987 7.3195 -2.6424 45 1 2.6671 10.5912 -1.9186 46 1 1.3313 9.7047 -2.6922 47 1 -0.9440 11.2691 1.0722 48 1 3.5132 8.3986 0.0234 49 1 4.4987 9.4634 -1.0081 50 1 5.6513 7.2959 -0.4092 51 1 5.4605 7.5303 -2.1651 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601584245.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:31 Heat of formation + Delta-G solvation = -26.028305 kcal Electronic energy + Delta-G solvation = -30938.864690 eV Core-core repulsion = 26874.377989 eV Total energy + Delta-G solvation = -4064.486701 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.07919 -39.41887 -37.82487 -37.63464 -35.93060 -34.51190 -32.32356 -31.84003 -30.78300 -30.41575 -28.79187 -26.32716 -26.11273 -24.81831 -23.59239 -23.14278 -22.35725 -21.73429 -20.89677 -19.90077 -18.87277 -17.34842 -17.19745 -16.75787 -16.53714 -16.17183 -15.59069 -15.28782 -14.89846 -14.61111 -14.50402 -14.48064 -14.31665 -14.12772 -13.88778 -13.56774 -13.37543 -13.28081 -12.88658 -12.72913 -12.50820 -12.45473 -12.33261 -12.04333 -11.89520 -11.63341 -11.38671 -11.32752 -11.15828 -11.09759 -10.96955 -10.74831 -10.60321 -10.38001 -10.27497 -10.06791 -9.57900 -9.20828 -8.85001 -8.74415 -8.64149 -8.55178 -7.31200 -6.15123 -4.15919 1.43303 2.18804 3.21152 3.24284 3.32030 3.33614 3.35626 3.98471 4.13501 4.34671 4.35204 4.45188 4.56810 4.85368 4.89147 4.97531 5.09168 5.12366 5.17819 5.28634 5.35169 5.43695 5.47817 5.50464 5.59967 5.62758 5.64441 5.68051 5.72373 5.75923 5.77743 5.90332 5.96343 5.97525 6.00764 6.21362 6.38510 6.56065 6.59294 6.60645 6.71936 6.87245 6.99634 7.00560 7.04919 7.34797 7.49033 7.66486 7.93798 7.97426 8.03682 8.38599 8.86476 9.47126 10.97763 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.014004 B = 0.002892 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.934446 B = 9680.333870 C =10691.463369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.689 5.689 3 C 0.044 3.956 4 C 0.136 3.864 5 H 0.077 0.923 6 C -0.113 4.113 7 C -0.138 4.138 8 C 0.090 3.910 9 N -0.586 5.586 10 C 0.525 3.475 11 O -0.511 6.511 12 C 0.508 3.492 13 O -0.530 6.530 14 N -0.570 5.570 15 C 0.075 3.925 16 C 0.049 3.951 17 N -0.535 5.535 18 C 0.155 3.845 19 C -0.554 4.554 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.897 5.897 23 Si 0.880 3.120 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.264 1.264 27 C 0.049 3.951 28 C 0.113 3.887 29 H 0.024 0.976 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.339 0.661 33 H 0.075 0.925 34 H 0.051 0.949 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.110 0.890 41 H 0.071 0.929 42 H 0.133 0.867 43 H 0.048 0.952 44 H 0.079 0.921 45 H 0.029 0.971 46 H 0.027 0.973 47 H 0.264 0.736 48 H 0.048 0.952 49 H 0.080 0.920 50 H 0.091 0.909 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.404 -21.343 -2.149 23.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.319 5.319 3 C -0.086 4.086 4 C 0.033 3.967 5 H 0.095 0.905 6 C -0.151 4.151 7 C -0.177 4.177 8 C -0.032 4.032 9 N -0.321 5.321 10 C 0.309 3.691 11 O -0.388 6.388 12 C 0.290 3.710 13 O -0.408 6.408 14 N -0.302 5.302 15 C -0.047 4.047 16 C -0.080 4.080 17 N -0.259 5.259 18 C 0.029 3.971 19 C -0.593 4.593 20 H 0.091 0.909 21 C -0.130 4.130 22 N -0.535 5.535 23 Si 0.707 3.293 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.188 1.188 27 C -0.081 4.081 28 C -0.009 4.009 29 H 0.043 0.957 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.156 0.844 33 H 0.094 0.906 34 H 0.069 0.931 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.128 0.872 41 H 0.089 0.911 42 H 0.150 0.850 43 H 0.067 0.933 44 H 0.097 0.903 45 H 0.047 0.953 46 H 0.045 0.955 47 H 0.074 0.926 48 H 0.067 0.933 49 H 0.099 0.901 50 H 0.109 0.891 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 9.555 -21.217 -1.923 23.348 hybrid contribution -1.114 1.244 -0.654 1.793 sum 8.441 -19.973 -2.578 21.836 Atomic orbital electron populations 1.22193 0.87322 1.01832 1.00870 1.60417 1.08147 1.13742 1.49632 1.22372 0.93789 0.90078 1.02383 1.21661 0.93216 0.81747 1.00067 0.90522 1.22581 0.96489 0.98113 0.97931 1.22888 0.97816 0.94302 1.02648 1.22805 0.95308 0.97997 0.87114 1.48332 1.46252 1.09441 1.28042 1.20015 0.82417 0.84746 0.81891 1.90507 1.34432 1.81890 1.31977 1.19807 0.84138 0.84928 0.82121 1.90647 1.32647 1.84057 1.33422 1.48085 1.29865 1.11182 1.41067 1.23171 0.86445 1.02233 0.92838 1.22388 0.95025 0.88940 1.01664 1.62443 1.13777 1.03284 1.46416 1.20181 0.92093 0.88393 0.96459 1.21669 1.21580 1.13702 1.02321 0.90899 1.24979 0.95330 0.97537 0.95183 1.69925 1.25522 1.35230 1.22859 0.86773 0.79244 0.81630 0.81609 1.20160 1.21297 1.18844 1.22259 0.93402 0.96892 0.95502 1.21995 0.94294 0.81998 1.02631 0.95694 0.91321 0.91584 0.84372 0.90614 0.93123 0.89890 0.89633 0.89582 0.90677 0.90986 0.87215 0.91110 0.85010 0.93347 0.90251 0.95316 0.95467 0.92624 0.93336 0.90126 0.89092 0.90721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.69 60.07 0.64 0.86 16 2 N -0.69 -5.78 6.38 -121.13 -0.77 -6.55 16 3 C 0.04 0.45 5.03 -3.82 -0.02 0.43 16 4 C 0.14 1.31 3.10 -66.96 -0.21 1.10 16 5 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 6 C -0.11 -0.82 6.00 -24.90 -0.15 -0.97 16 7 C -0.14 -0.99 7.08 -24.58 -0.17 -1.17 16 8 C 0.09 0.93 6.30 -2.53 -0.02 0.91 16 9 N -0.59 -7.01 3.07 -163.52 -0.50 -7.51 16 10 C 0.52 7.69 7.60 -11.59 -0.09 7.60 16 11 O -0.51 -8.02 12.15 5.49 0.07 -7.95 16 12 C 0.51 8.16 7.70 -11.59 -0.09 8.07 16 13 O -0.53 -8.87 13.19 5.50 0.07 -8.80 16 14 N -0.57 -9.36 3.00 -172.69 -0.52 -9.88 16 15 C 0.07 1.22 6.18 -3.36 -0.02 1.20 16 16 C 0.05 0.95 5.17 -3.46 -0.02 0.93 16 17 N -0.54 -10.91 4.83 -235.47 -1.14 -12.04 16 18 C 0.16 3.66 4.18 -4.98 -0.02 3.63 16 19 C -0.55 -15.26 8.30 -34.44 -0.29 -15.55 16 20 H 0.07 2.21 6.13 -52.48 -0.32 1.89 16 21 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 22 N -0.90 -27.22 13.96 55.43 0.77 -26.44 16 23 Si 0.88 21.20 27.37 -169.99 -4.65 16.55 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.26 -6.09 6.69 56.52 0.38 -5.72 16 27 C 0.05 0.92 5.24 -3.70 -0.02 0.90 16 28 C 0.11 1.79 6.61 -3.60 -0.02 1.76 16 29 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.34 2.39 8.75 -39.29 -0.34 2.05 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.05 0.64 6.92 -51.93 -0.36 0.28 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.09 0.66 7.85 -51.93 -0.41 0.25 16 37 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.76 8.14 -51.92 -0.42 0.33 16 40 H 0.11 1.29 5.80 -51.93 -0.30 0.99 16 41 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.13 2.18 4.35 -54.74 -0.24 1.94 16 43 H 0.05 1.08 6.79 -51.93 -0.35 0.73 16 44 H 0.08 1.50 8.11 -51.93 -0.42 1.08 16 45 H 0.03 0.68 7.48 -51.93 -0.39 0.29 16 46 H 0.03 0.64 7.29 -51.93 -0.38 0.26 16 47 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 48 H 0.05 1.06 6.92 -51.93 -0.36 0.70 16 49 H 0.08 1.44 8.05 -51.93 -0.42 1.02 16 50 H 0.09 1.40 7.04 -51.93 -0.37 1.03 16 51 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 388.87 15.07 5.86 5.86 Total: -1.00 -31.31 388.87 -9.86 -41.17 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -8.46 Total: 3.90 kcal Atomic # 6 Polarization: 12.28 SS G_CDS: -0.59 Total: 11.70 kcal Atomic # 7 Polarization: -60.27 SS G_CDS: -2.16 Total: -62.43 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: 0.14 Total: -16.75 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.65 Total: 16.55 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.31 -9.86 -41.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601584245.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.145 kcal (2) G-P(sol) polarization free energy of solvation -31.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds