Wall clock time and date at job start Tue Mar 31 2020 20:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46903 * 110.99832 * 2 1 4 4 C 1.52996 * 109.47136 * 184.68868 * 3 2 1 5 5 H 1.09004 * 109.87314 * 64.91036 * 4 3 2 6 6 C 1.54321 * 109.88594 * 303.89312 * 4 3 2 7 7 C 1.55156 * 102.94491 * 218.23594 * 6 4 3 8 8 C 1.54906 * 101.58184 * 35.49659 * 7 6 4 9 9 N 1.47020 * 110.01058 * 186.00382 * 4 3 2 10 10 C 1.34773 * 125.65392 * 298.38860 * 9 4 3 11 11 O 1.21355 * 119.99413 * 3.87020 * 10 9 4 12 12 C 1.49451 * 120.00488 * 183.87561 * 10 9 4 13 13 O 1.21351 * 119.99480 * 6.27585 * 12 10 9 14 14 N 1.34773 * 119.99905 * 186.28272 * 12 10 9 15 15 C 1.47077 * 120.88298 * 6.65342 * 14 12 10 16 16 C 1.53699 * 108.27820 * 128.75480 * 15 14 12 17 17 N 1.46904 * 109.25676 * 54.08143 * 16 15 14 18 18 C 1.46892 * 110.99976 * 172.61093 * 17 16 15 19 19 C 1.50694 * 109.47662 * 59.36759 * 18 17 16 20 20 H 1.08007 * 119.99701 * 5.13189 * 19 18 17 21 21 C 1.37878 * 120.00514 * 185.13830 * 19 18 17 22 22 N 1.31509 * 120.00353 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99746 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.46983 * 90.00224 * 23 21 19 25 25 H 1.48492 * 109.47156 * 210.00271 * 23 21 19 26 26 H 1.48500 * 109.47013 * 330.00272 * 23 21 19 27 27 C 1.46899 * 111.26893 * 296.75937 * 17 16 15 28 28 C 1.47084 * 120.87654 * 186.92953 * 14 12 10 29 29 H 1.09001 * 109.46995 * 59.99692 * 1 2 3 30 30 H 1.09002 * 109.47028 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46844 * 299.99510 * 1 2 3 32 32 H 1.00901 * 110.99960 * 236.05093 * 2 1 3 33 33 H 1.09004 * 109.46516 * 64.69241 * 3 2 1 34 34 H 1.08996 * 109.47346 * 304.69419 * 3 2 1 35 35 H 1.08999 * 110.72337 * 99.86679 * 6 4 3 36 36 H 1.09001 * 110.71925 * 336.59802 * 6 4 3 37 37 H 1.09003 * 111.00809 * 153.57697 * 7 6 4 38 38 H 1.09007 * 111.00002 * 277.42549 * 7 6 4 39 39 H 1.09011 * 110.36333 * 81.83103 * 8 7 6 40 40 H 1.08997 * 110.37020 * 204.15041 * 8 7 6 41 41 H 1.08996 * 109.62810 * 248.51959 * 15 14 12 42 42 H 1.08995 * 109.62748 * 9.10144 * 15 14 12 43 43 H 1.08997 * 109.65043 * 294.08147 * 16 15 14 44 44 H 1.08996 * 109.44334 * 173.95535 * 16 15 14 45 45 H 1.09007 * 109.47013 * 179.36917 * 18 17 16 46 46 H 1.09006 * 109.46979 * 299.36447 * 18 17 16 47 47 H 0.96995 * 120.00121 * 179.97438 * 22 21 19 48 48 H 1.09005 * 109.49309 * 303.14568 * 27 17 16 49 49 H 1.08993 * 109.52010 * 183.07943 * 27 17 16 50 50 H 1.08994 * 109.63011 * 350.89393 * 28 14 12 51 51 H 1.09001 * 109.62252 * 111.28482 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5204 1.3324 -0.1179 5 1 3.8068 0.9158 -1.0836 6 6 4.1131 0.4751 1.0202 7 6 5.4018 1.2494 1.4036 8 6 4.9522 2.7186 1.2062 9 7 4.0709 2.6882 0.0248 10 6 3.8134 3.7304 -0.7901 11 8 3.0153 3.6093 -1.6962 12 6 4.5107 5.0351 -0.5778 13 8 5.3903 5.1247 0.2534 14 7 4.1625 6.1120 -1.3094 15 6 3.0059 6.0665 -2.2167 16 6 2.1054 7.2740 -1.9109 17 7 2.9039 8.5048 -1.9847 18 6 2.0494 9.6942 -1.8721 19 6 1.3113 9.6601 -0.5587 20 1 1.5232 8.8820 0.1597 21 6 0.3655 10.6222 -0.2741 22 7 -0.2789 10.5921 0.8719 23 14 -0.0005 11.9684 -1.5164 24 1 -1.0882 11.5222 -2.4237 25 1 -0.4253 13.1989 -0.8020 26 1 1.2210 12.2540 -2.3110 27 6 3.9601 8.5169 -0.9638 28 6 4.9329 7.3622 -1.2262 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8306 -0.5261 -0.7814 33 1 1.7154 1.8680 0.9291 34 1 1.5796 1.9203 -0.8449 35 1 4.3563 -0.5255 0.6627 36 1 3.4260 0.4275 1.8650 37 1 5.6767 1.0610 2.4414 38 1 6.2227 0.9985 0.7319 39 1 4.4026 3.0678 2.0805 40 1 5.8152 3.3577 1.0195 41 1 3.3490 6.1143 -3.2501 42 1 2.4498 5.1431 -2.0550 43 1 1.6843 7.1731 -0.9106 44 1 1.2987 7.3195 -2.6424 45 1 2.6671 10.5912 -1.9186 46 1 1.3313 9.7047 -2.6922 47 1 -0.9440 11.2691 1.0722 48 1 3.5132 8.3986 0.0234 49 1 4.4987 9.4634 -1.0081 50 1 5.6513 7.2959 -0.4092 51 1 5.4605 7.5303 -2.1651 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601584245.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:30 Heat of formation + Delta-G solvation = -50.483661 kcal Electronic energy + Delta-G solvation = -30939.925154 eV Core-core repulsion = 26874.377989 eV Total energy + Delta-G solvation = -4065.547165 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.23256 -40.56801 -39.11030 -38.89995 -36.74297 -36.04923 -34.38309 -32.72456 -32.20786 -31.21998 -30.55413 -27.83678 -26.94375 -26.14748 -24.83191 -24.26592 -23.68836 -22.95713 -22.00331 -21.13953 -20.20093 -19.01081 -18.41757 -18.16134 -17.63838 -17.34364 -16.60551 -16.54708 -16.23478 -16.14320 -15.95563 -15.72961 -15.37449 -15.32482 -15.16479 -14.81182 -14.47796 -14.34147 -14.20239 -13.98961 -13.83623 -13.64506 -13.51002 -13.17933 -13.09849 -12.86247 -12.69535 -12.60761 -12.46113 -12.29594 -12.23285 -12.04134 -11.91873 -11.85332 -11.71104 -11.61734 -11.52219 -10.82480 -10.35696 -10.00904 -9.83003 -9.51447 -9.10504 -8.35019 -6.41581 0.21575 1.08305 1.35073 1.36293 1.48677 1.98743 2.19880 2.31547 2.96202 3.00394 3.20321 3.28503 3.61655 3.66522 3.83589 3.91343 4.01474 4.19149 4.19858 4.23437 4.29299 4.36291 4.45653 4.47161 4.52959 4.60294 4.64823 4.67724 4.76101 4.81041 4.91211 4.96416 4.97103 4.99355 5.00198 5.00274 5.03610 5.11245 5.14624 5.18226 5.32619 5.40587 5.43928 5.81213 5.89316 6.02945 6.13801 6.25977 6.26885 6.37232 6.49034 6.64693 6.80166 7.25705 8.81592 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.014004 B = 0.002892 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.934446 B = 9680.333870 C =10691.463369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.681 5.681 3 C 0.053 3.947 4 C 0.133 3.867 5 H 0.084 0.916 6 C -0.102 4.102 7 C -0.125 4.125 8 C 0.082 3.918 9 N -0.582 5.582 10 C 0.520 3.480 11 O -0.527 6.527 12 C 0.504 3.496 13 O -0.539 6.539 14 N -0.579 5.579 15 C 0.090 3.910 16 C 0.053 3.947 17 N -0.525 5.525 18 C 0.161 3.839 19 C -0.553 4.553 20 H 0.026 0.974 21 C 0.009 3.991 22 N -0.949 5.949 23 Si 0.955 3.045 24 H -0.266 1.266 25 H -0.286 1.286 26 H -0.241 1.241 27 C 0.051 3.949 28 C 0.122 3.878 29 H 0.017 0.983 30 H 0.089 0.911 31 H 0.057 0.943 32 H 0.350 0.650 33 H 0.058 0.942 34 H 0.024 0.976 35 H 0.107 0.893 36 H 0.082 0.918 37 H 0.106 0.894 38 H 0.085 0.915 39 H 0.066 0.934 40 H 0.096 0.904 41 H 0.091 0.909 42 H 0.133 0.867 43 H 0.006 0.994 44 H 0.084 0.916 45 H 0.036 0.964 46 H 0.036 0.964 47 H 0.266 0.734 48 H 0.006 0.994 49 H 0.093 0.907 50 H 0.096 0.904 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.821 -22.633 -3.904 25.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.312 5.312 3 C -0.078 4.078 4 C 0.030 3.970 5 H 0.102 0.898 6 C -0.140 4.140 7 C -0.163 4.163 8 C -0.039 4.039 9 N -0.315 5.315 10 C 0.303 3.697 11 O -0.406 6.406 12 C 0.287 3.713 13 O -0.417 6.417 14 N -0.311 5.311 15 C -0.031 4.031 16 C -0.077 4.077 17 N -0.248 5.248 18 C 0.034 3.966 19 C -0.592 4.592 20 H 0.044 0.956 21 C -0.189 4.189 22 N -0.589 5.589 23 Si 0.777 3.223 24 H -0.191 1.191 25 H -0.212 1.212 26 H -0.165 1.165 27 C -0.078 4.078 28 C 0.000 4.000 29 H 0.035 0.965 30 H 0.108 0.892 31 H 0.076 0.924 32 H 0.169 0.831 33 H 0.077 0.923 34 H 0.042 0.958 35 H 0.125 0.875 36 H 0.101 0.899 37 H 0.125 0.875 38 H 0.103 0.897 39 H 0.085 0.915 40 H 0.114 0.886 41 H 0.109 0.891 42 H 0.150 0.850 43 H 0.024 0.976 44 H 0.103 0.897 45 H 0.055 0.945 46 H 0.054 0.946 47 H 0.075 0.925 48 H 0.025 0.975 49 H 0.111 0.889 50 H 0.114 0.886 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 11.007 -22.555 -3.671 25.365 hybrid contribution -1.547 1.544 0.022 2.185 sum 9.460 -21.012 -3.649 23.330 Atomic orbital electron populations 1.22232 0.87043 1.02929 1.00094 1.60410 1.08394 1.12326 1.50106 1.22187 0.94446 0.90833 1.00305 1.21884 0.92638 0.80779 1.01666 0.89768 1.22569 0.96115 0.98607 0.96732 1.22874 0.97883 0.91324 1.04226 1.22924 0.94429 1.00398 0.86151 1.48473 1.45754 1.09682 1.27564 1.19781 0.82551 0.84861 0.82468 1.90484 1.35147 1.82051 1.32895 1.20146 0.84066 0.85508 0.81618 1.90641 1.33072 1.84455 1.33567 1.48184 1.30015 1.11621 1.41310 1.23032 0.86011 1.00376 0.93715 1.22379 0.95905 0.89971 0.99404 1.62491 1.13317 1.02607 1.46387 1.20079 0.92336 0.90091 0.94130 1.21880 1.21883 1.12221 1.03227 0.95587 1.25990 0.95081 1.00461 0.97338 1.70090 1.26711 1.36685 1.25415 0.85602 0.80010 0.77781 0.78875 1.19117 1.21172 1.16462 1.22283 0.93434 0.99129 0.92944 1.21944 0.93316 0.80533 1.04184 0.96468 0.89241 0.92431 0.83139 0.92307 0.95787 0.87504 0.89927 0.87527 0.89654 0.91542 0.88609 0.89089 0.84976 0.97569 0.89736 0.94547 0.94633 0.92485 0.97542 0.88903 0.88561 0.88052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.69 127.69 1.37 1.77 16 2 N -0.68 -10.63 6.38 -537.14 -3.43 -14.06 16 3 C 0.05 1.09 5.03 86.30 0.43 1.52 16 4 C 0.13 2.40 3.10 45.34 0.14 2.54 16 5 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 6 C -0.10 -1.22 6.00 31.78 0.19 -1.03 16 7 C -0.13 -1.48 7.08 31.98 0.23 -1.25 16 8 C 0.08 1.65 6.30 86.85 0.55 2.19 16 9 N -0.58 -13.72 3.07 -789.61 -2.42 -16.14 16 10 C 0.52 15.36 7.60 87.27 0.66 16.02 16 11 O -0.53 -16.70 12.15 -3.26 -0.04 -16.73 16 12 C 0.50 16.32 7.70 87.27 0.67 16.99 16 13 O -0.54 -18.16 13.19 -3.25 -0.04 -18.20 16 14 N -0.58 -19.00 3.00 -818.63 -2.46 -21.46 16 15 C 0.09 2.93 6.18 86.50 0.53 3.47 16 16 C 0.05 2.09 5.17 86.54 0.45 2.53 16 17 N -0.52 -21.32 4.83 -898.88 -4.34 -25.66 16 18 C 0.16 7.52 4.18 85.56 0.36 7.87 16 19 C -0.55 -31.56 8.30 25.60 0.21 -31.35 16 20 H 0.03 1.69 6.13 -2.91 -0.02 1.67 16 21 C 0.01 0.54 5.47 84.66 0.46 1.00 16 22 N -0.95 -59.69 13.96 21.45 0.30 -59.39 16 23 Si 0.95 43.56 27.37 68.60 1.88 45.44 16 24 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 25 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 26 H -0.24 -10.08 6.69 99.48 0.67 -9.41 16 27 C 0.05 1.96 5.24 86.38 0.45 2.41 16 28 C 0.12 3.78 6.61 86.35 0.57 4.35 16 29 H 0.02 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.35 4.28 8.75 -89.69 -0.79 3.50 16 33 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.02 0.62 6.92 -2.39 -0.02 0.61 16 35 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.08 1.09 7.85 -2.39 -0.02 1.07 16 37 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 39 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 40 H 0.10 2.22 5.80 -2.39 -0.01 2.21 16 41 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 42 H 0.13 4.42 4.35 -46.85 -0.20 4.22 16 43 H 0.01 0.29 6.79 -2.39 -0.02 0.27 16 44 H 0.08 3.22 8.11 -2.39 -0.02 3.20 16 45 H 0.04 1.66 7.48 -2.38 -0.02 1.64 16 46 H 0.04 1.62 7.29 -2.38 -0.02 1.60 16 47 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 48 H 0.01 0.29 6.92 -2.38 -0.02 0.27 16 49 H 0.09 3.28 8.05 -2.39 -0.02 3.26 16 50 H 0.10 2.90 7.04 -2.39 -0.02 2.88 16 51 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 Total: -1.00 -70.95 388.87 -3.36 -74.31 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: -0.08 Total: 22.85 kcal Atomic # 6 Polarization: 21.76 SS G_CDS: 7.28 Total: 29.04 kcal Atomic # 7 Polarization: -124.35 SS G_CDS: -12.35 Total: -136.70 kcal Atomic # 8 Polarization: -34.85 SS G_CDS: -0.08 Total: -34.94 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 1.88 Total: 45.44 kcal Total: -70.95 -3.36 -74.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601584245.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.823 kcal (2) G-P(sol) polarization free energy of solvation -70.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds