Wall clock time and date at job start Tue Mar 31 2020 20:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34772 * 120.00055 * 2 1 4 4 O 1.21275 * 120.00025 * 359.97438 * 3 2 1 5 5 C 1.50708 * 119.99843 * 180.02562 * 3 2 1 6 6 H 1.08999 * 110.53946 * 61.15029 * 5 3 2 7 7 C 1.54892 * 110.48130 * 298.54343 * 5 3 2 8 8 C 1.54888 * 102.74474 * 203.37783 * 7 5 3 9 9 C 1.54271 * 104.19749 * 37.94422 * 8 7 5 10 10 C 1.53872 * 106.59693 * 336.39075 * 9 8 7 11 11 H 1.08998 * 110.03829 * 119.28127 * 10 9 8 12 12 N 1.46504 * 110.03096 * 240.66801 * 10 9 8 13 13 C 1.34777 * 119.99999 * 273.54261 * 12 10 9 14 14 O 1.21588 * 119.99714 * 354.85905 * 13 12 10 15 15 N 1.34767 * 120.00318 * 174.85165 * 13 12 10 16 16 C 1.47075 * 120.88541 * 184.71661 * 15 13 12 17 17 C 1.53687 * 108.28265 * 128.75870 * 16 15 13 18 18 N 1.46899 * 109.25580 * 54.07988 * 17 16 15 19 19 C 1.46910 * 110.99974 * 172.61336 * 18 17 16 20 20 C 1.50692 * 109.47082 * 59.44124 * 19 18 17 21 21 H 1.07999 * 120.00494 * 355.05028 * 20 19 18 22 22 C 1.37874 * 119.99840 * 175.05663 * 20 19 18 23 23 N 1.31511 * 120.00396 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 120.00142 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46782 * 59.99898 * 24 22 20 26 26 H 1.48493 * 109.46977 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47282 * 300.00111 * 24 22 20 28 28 C 1.46896 * 111.27160 * 296.76003 * 18 17 16 29 29 C 1.47083 * 120.87785 * 4.99749 * 15 13 12 30 30 H 1.08997 * 109.47766 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47059 * 300.00610 * 1 2 3 32 32 H 1.09003 * 109.46792 * 59.99956 * 1 2 3 33 33 H 0.96998 * 119.99424 * 179.97438 * 2 1 3 34 34 H 1.09003 * 110.75460 * 85.06716 * 7 5 3 35 35 H 1.08997 * 110.75777 * 321.69162 * 7 5 3 36 36 H 1.09005 * 110.48832 * 156.62093 * 8 7 5 37 37 H 1.08998 * 110.48777 * 279.12997 * 8 7 5 38 38 H 1.09002 * 110.02991 * 95.67208 * 9 8 7 39 39 H 1.08994 * 110.03076 * 217.10060 * 9 8 7 40 40 H 0.96998 * 120.00240 * 93.54486 * 12 10 9 41 41 H 1.09004 * 109.62627 * 248.53152 * 16 15 13 42 42 H 1.09004 * 109.62835 * 9.10245 * 16 15 13 43 43 H 1.09009 * 109.64664 * 294.08144 * 17 16 15 44 44 H 1.09000 * 109.44769 * 173.96081 * 17 16 15 45 45 H 1.08999 * 109.46780 * 179.44233 * 19 18 17 46 46 H 1.09004 * 109.46790 * 299.43890 * 19 18 17 47 47 H 0.96995 * 120.00796 * 180.02562 * 23 22 20 48 48 H 1.09002 * 109.49298 * 303.14193 * 28 18 17 49 49 H 1.08998 * 109.51742 * 183.07568 * 28 18 17 50 50 H 1.08993 * 109.63138 * 350.89401 * 29 15 13 51 51 H 1.09008 * 109.63026 * 111.28195 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2174 -0.0005 5 6 3.6459 1.1671 -0.0006 6 1 4.0280 0.6748 -0.8949 7 6 4.1884 0.4735 1.2737 8 6 5.6071 1.0789 1.4147 9 6 5.4329 2.5530 0.9944 10 6 4.1859 2.6090 0.0946 11 1 3.4337 3.2608 0.5389 12 7 4.5499 3.0985 -1.2375 13 6 4.5848 4.4234 -1.4822 14 8 4.2247 5.2093 -0.6272 15 7 5.0191 4.8772 -2.6746 16 6 5.1629 6.3190 -2.9268 17 6 6.5732 6.5729 -3.4825 18 7 6.7948 5.7131 -4.6527 19 6 8.0605 6.0474 -5.3195 20 6 9.2011 5.8680 -4.3511 21 1 8.9998 5.6164 -3.3203 22 6 10.5016 6.0253 -4.7810 23 7 10.7468 6.3313 -6.0363 24 14 11.9155 5.8037 -3.5805 25 1 11.8844 4.4255 -3.0281 26 1 13.2032 6.0246 -4.2862 27 1 11.7828 6.7839 -2.4730 28 6 6.7531 4.2915 -4.2851 29 6 5.3559 3.9438 -3.7603 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.9499 -0.8401 0.0004 34 1 4.2413 -0.6061 1.1330 35 1 3.5747 0.7217 2.1396 36 1 5.9484 1.0146 2.4479 37 1 6.3064 0.5708 0.7507 38 1 5.2859 3.1776 1.8755 39 1 6.3090 2.8891 0.4399 40 1 4.7656 2.4691 -1.9432 41 1 4.4165 6.6398 -3.6535 42 1 5.0306 6.8687 -1.9949 43 1 7.3152 6.3442 -2.7174 44 1 6.6644 7.6184 -3.7768 45 1 8.2045 5.3894 -6.1764 46 1 8.0304 7.0832 -5.6577 47 1 11.6617 6.4416 -6.3389 48 1 7.4926 4.0946 -3.5089 49 1 6.9744 3.6821 -5.1613 50 1 5.3514 2.9225 -3.3798 51 1 4.6258 4.0383 -4.5642 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601588896.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:12 Heat of formation + Delta-G solvation = -83.087937 kcal Electronic energy + Delta-G solvation = -30684.461575 eV Core-core repulsion = 26617.500583 eV Total energy + Delta-G solvation = -4066.960992 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.78243 -40.90372 -39.27680 -38.23824 -36.01650 -35.68132 -34.81290 -34.14047 -31.96869 -30.80801 -30.00549 -28.42474 -27.33639 -26.94164 -24.57617 -24.23443 -22.92578 -22.38782 -21.40508 -20.98349 -20.49799 -19.31763 -18.44933 -18.34711 -17.64692 -16.93027 -16.72022 -16.51011 -16.43704 -16.07418 -15.96829 -15.61038 -15.47092 -15.28105 -15.08936 -14.65350 -14.51847 -14.39181 -13.85773 -13.69109 -13.60707 -13.34583 -13.09447 -13.02751 -12.92962 -12.87717 -12.56085 -12.48206 -12.45821 -12.25233 -12.07254 -11.99304 -11.84626 -11.82128 -11.63114 -11.50529 -11.19148 -10.86487 -10.61686 -10.22652 -10.12890 -9.58515 -9.03293 -8.17207 -6.36417 1.34847 1.36480 1.44377 1.57604 1.62478 2.12049 2.25800 2.35395 2.88068 3.07769 3.29132 3.33600 3.56712 3.84833 3.98867 4.10029 4.14192 4.17400 4.33630 4.35305 4.37099 4.43384 4.50964 4.53557 4.57519 4.59868 4.61968 4.69095 4.76228 4.87155 4.96101 4.97383 5.04283 5.07358 5.17763 5.18874 5.20535 5.21780 5.32258 5.37989 5.44776 5.47466 5.60886 5.72157 5.90730 6.03151 6.21777 6.45465 6.55765 6.83233 6.94586 7.27709 7.35033 7.54482 8.84894 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.015904 B = 0.002700 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.146434 B =10366.980818 C =11174.433550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.717 5.717 3 C 0.512 3.488 4 O -0.586 6.586 5 C -0.112 4.112 6 H 0.138 0.862 7 C -0.100 4.100 8 C -0.113 4.113 9 C -0.138 4.138 10 C 0.169 3.831 11 H 0.065 0.935 12 N -0.726 5.726 13 C 0.704 3.296 14 O -0.636 6.636 15 N -0.628 5.628 16 C 0.144 3.856 17 C 0.058 3.942 18 N -0.536 5.536 19 C 0.201 3.799 20 C -0.557 4.557 21 H 0.050 0.950 22 C 0.016 3.984 23 N -0.922 5.922 24 Si 0.952 3.048 25 H -0.268 1.268 26 H -0.280 1.280 27 H -0.276 1.276 28 C 0.052 3.948 29 C 0.125 3.875 30 H 0.114 0.886 31 H 0.045 0.955 32 H 0.043 0.957 33 H 0.421 0.579 34 H 0.119 0.881 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.406 0.594 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.016 0.984 44 H 0.074 0.926 45 H 0.016 0.984 46 H 0.005 0.995 47 H 0.266 0.734 48 H 0.020 0.980 49 H 0.084 0.916 50 H 0.104 0.896 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.985 -21.413 12.491 29.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.370 5.370 3 C 0.299 3.701 4 O -0.465 6.465 5 C -0.134 4.134 6 H 0.156 0.844 7 C -0.138 4.138 8 C -0.151 4.151 9 C -0.178 4.178 10 C 0.063 3.937 11 H 0.083 0.917 12 N -0.383 5.383 13 C 0.405 3.595 14 O -0.517 6.517 15 N -0.365 5.365 16 C 0.020 3.980 17 C -0.072 4.072 18 N -0.260 5.260 19 C 0.075 3.925 20 C -0.596 4.596 21 H 0.068 0.932 22 C -0.184 4.184 23 N -0.562 5.562 24 Si 0.777 3.223 25 H -0.193 1.193 26 H -0.205 1.205 27 H -0.202 1.202 28 C -0.077 4.077 29 C 0.003 3.997 30 H 0.132 0.868 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.259 0.741 34 H 0.137 0.863 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.245 0.755 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.034 0.966 44 H 0.093 0.907 45 H 0.034 0.966 46 H 0.023 0.977 47 H 0.075 0.925 48 H 0.038 0.962 49 H 0.102 0.898 50 H 0.122 0.878 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -16.943 -20.010 12.634 29.105 hybrid contribution 1.966 0.072 0.442 2.016 sum -14.977 -19.938 13.076 28.157 Atomic orbital electron populations 1.21648 0.79210 1.04225 1.01051 1.45665 1.08093 1.08521 1.74680 1.20876 0.90694 0.83630 0.74882 1.90763 1.71252 1.33474 1.51045 1.22443 0.90514 0.96199 1.04221 0.84403 1.22500 0.95605 1.01560 0.94118 1.22334 0.97259 0.92647 1.02833 1.22601 0.96881 0.99335 0.98935 1.21324 0.96224 0.94192 0.81931 0.91720 1.45208 1.74271 1.04499 1.14371 1.16006 0.78082 0.83425 0.81940 1.90849 1.56829 1.56590 1.47469 1.47382 1.69007 1.07964 1.12126 1.21600 0.96028 0.79834 1.00521 1.22288 0.94989 0.97902 0.91975 1.62408 1.34994 1.03760 1.24861 1.19429 0.84515 0.95129 0.93449 1.21904 0.92847 1.48389 0.96478 0.93175 1.25738 1.01425 0.94605 0.96624 1.70031 1.21114 1.48493 1.16542 0.85704 0.78630 0.78875 0.79051 1.19334 1.20488 1.20186 1.22273 0.95582 0.90175 0.99667 1.21890 0.95860 0.92679 0.89311 0.86753 0.93581 0.93809 0.74139 0.86283 0.91222 0.90026 0.89514 0.92515 0.92528 0.75478 0.90183 0.90274 0.96569 0.90743 0.96587 0.97732 0.92518 0.96187 0.89785 0.87779 0.89538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.83 10.70 127.77 1.37 2.19 16 2 N -0.72 -7.23 5.65 -484.53 -2.74 -9.97 16 3 C 0.51 9.63 7.15 87.66 0.63 10.26 16 4 O -0.59 -18.32 15.46 -3.01 -0.05 -18.37 16 5 C -0.11 -1.54 2.95 -10.46 -0.03 -1.57 16 6 H 0.14 1.07 7.73 -2.39 -0.02 1.05 16 7 C -0.10 -0.81 6.26 31.89 0.20 -0.61 16 8 C -0.11 -1.29 6.83 31.67 0.22 -1.08 16 9 C -0.14 -2.94 6.59 31.32 0.21 -2.73 16 10 C 0.17 4.03 2.62 45.71 0.12 4.15 16 11 H 0.06 2.18 6.30 -2.39 -0.02 2.16 16 12 N -0.73 -18.67 4.91 -454.35 -2.23 -20.90 16 13 C 0.70 24.61 8.30 179.06 1.49 26.10 16 14 O -0.64 -27.77 15.46 -3.99 -0.06 -27.84 16 15 N -0.63 -20.65 3.00 -835.06 -2.51 -23.16 16 16 C 0.14 5.04 6.61 86.50 0.57 5.62 16 17 C 0.06 2.33 5.17 86.53 0.45 2.78 16 18 N -0.54 -22.43 4.83 -898.88 -4.34 -26.77 16 19 C 0.20 10.34 5.11 85.55 0.44 10.78 16 20 C -0.56 -30.54 7.76 25.60 0.20 -30.34 16 21 H 0.05 2.77 5.88 -2.91 -0.02 2.75 16 22 C 0.02 0.89 5.46 84.65 0.46 1.35 16 23 N -0.92 -54.03 13.29 21.45 0.28 -53.75 16 24 Si 0.95 43.73 29.54 68.60 2.03 45.76 16 25 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 26 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 27 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 28 C 0.05 1.85 5.25 86.38 0.45 2.31 16 29 C 0.13 3.38 6.59 86.35 0.57 3.95 16 30 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.05 0.60 8.14 -2.39 -0.02 0.59 16 32 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.42 0.81 8.81 -92.71 -0.82 -0.01 16 34 H 0.12 0.08 8.14 -2.39 -0.02 0.06 16 35 H 0.07 0.70 8.05 -2.39 -0.02 0.68 16 36 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 37 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.06 1.35 8.14 -2.39 -0.02 1.34 16 39 H 0.06 1.40 7.92 -2.39 -0.02 1.38 16 40 H 0.41 7.70 5.84 -92.71 -0.54 7.16 16 41 H 0.08 2.59 8.14 -2.38 -0.02 2.57 16 42 H 0.08 2.92 7.09 -2.39 -0.02 2.91 16 43 H 0.02 0.73 6.62 -2.38 -0.02 0.72 16 44 H 0.07 3.00 8.11 -2.39 -0.02 2.98 16 45 H 0.02 0.88 8.07 -2.39 -0.02 0.86 16 46 H 0.00 0.25 8.14 -2.38 -0.02 0.23 16 47 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 48 H 0.02 0.80 7.11 -2.39 -0.02 0.78 16 49 H 0.08 2.85 8.06 -2.39 -0.02 2.84 16 50 H 0.10 2.02 5.63 -2.39 -0.01 2.00 16 51 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 Total: -1.00 -82.49 397.75 -2.70 -85.19 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -0.41 Total: 16.64 kcal Atomic # 6 Polarization: 25.82 SS G_CDS: 7.33 Total: 33.15 kcal Atomic # 7 Polarization: -123.00 SS G_CDS: -11.53 Total: -134.53 kcal Atomic # 8 Polarization: -46.10 SS G_CDS: -0.11 Total: -46.21 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -82.49 -2.70 -85.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601588896.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.102 kcal (2) G-P(sol) polarization free energy of solvation -82.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds