Wall clock time and date at job start Tue Mar 31 2020 20:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46895 * 110.99650 * 2 1 4 4 H 1.08998 * 109.52648 * 35.08047 * 3 2 1 5 5 C 1.53043 * 109.49516 * 155.15864 * 3 2 1 6 6 C 1.53046 * 109.54032 * 181.31535 * 5 3 2 7 7 C 1.53191 * 109.31086 * 298.63954 * 6 5 3 8 8 N 1.46925 * 108.77945 * 54.63184 * 7 6 5 9 9 C 1.34775 * 120.62949 * 126.41133 * 8 7 6 10 10 O 1.21350 * 119.99638 * 176.39326 * 9 8 7 11 11 C 1.49445 * 120.00327 * 356.39467 * 9 8 7 12 12 O 1.21351 * 120.00099 * 7.19576 * 11 9 8 13 13 N 1.34779 * 120.00470 * 187.19593 * 11 9 8 14 14 C 1.47075 * 120.88280 * 186.76847 * 13 11 9 15 15 C 1.53696 * 108.27567 * 128.75353 * 14 13 11 16 16 N 1.46902 * 109.26063 * 54.07995 * 15 14 13 17 17 C 1.46898 * 111.00022 * 172.60461 * 16 15 14 18 18 C 1.50698 * 109.47289 * 294.30249 * 17 16 15 19 19 H 1.07999 * 120.00192 * 0.02562 * 18 17 16 20 20 C 1.37879 * 119.99970 * 180.02562 * 18 17 16 21 21 N 1.31523 * 119.99654 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00132 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46897 * 60.00037 * 22 20 18 24 24 H 1.48499 * 109.47076 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47157 * 300.00194 * 22 20 18 26 26 C 1.46899 * 111.26762 * 296.75640 * 16 15 14 27 27 C 1.47085 * 120.87489 * 7.03931 * 13 11 9 28 28 C 1.46927 * 118.73875 * 306.39231 * 8 7 6 29 29 H 1.08999 * 109.46948 * 60.00117 * 1 2 3 30 30 H 1.09001 * 109.46938 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47458 * 300.00020 * 1 2 3 32 32 H 1.00903 * 111.00146 * 236.04869 * 2 1 3 33 33 H 1.09001 * 109.46174 * 301.33584 * 5 3 2 34 34 H 1.09001 * 109.46033 * 61.30087 * 5 3 2 35 35 H 1.08990 * 109.49943 * 178.68276 * 6 5 3 36 36 H 1.09004 * 109.52070 * 58.60081 * 6 5 3 37 37 H 1.09004 * 109.58525 * 294.83971 * 7 6 5 38 38 H 1.08998 * 109.58284 * 174.42158 * 7 6 5 39 39 H 1.09001 * 109.62432 * 248.51590 * 14 13 11 40 40 H 1.08995 * 109.63372 * 9.09902 * 14 13 11 41 41 H 1.09001 * 109.64846 * 294.07645 * 15 14 13 42 42 H 1.09000 * 109.44263 * 173.95881 * 15 14 13 43 43 H 1.09006 * 109.47149 * 54.30556 * 17 16 15 44 44 H 1.09009 * 109.46818 * 174.30128 * 17 16 15 45 45 H 0.97000 * 119.99345 * 180.02562 * 21 20 18 46 46 H 1.08997 * 109.49528 * 303.14291 * 26 16 15 47 47 H 1.08998 * 109.51198 * 183.07482 * 26 16 15 48 48 H 1.08998 * 109.63197 * 350.90328 * 27 13 11 49 49 H 1.09003 * 109.62515 * 111.48269 * 27 13 11 50 50 H 1.09000 * 109.58625 * 293.82231 * 28 8 7 51 51 H 1.08999 * 109.58706 * 173.39114 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3411 2.0128 0.5904 5 6 3.4007 1.3791 0.6061 6 6 3.9371 2.8122 0.6367 7 6 4.0248 3.3510 -0.7947 8 7 2.7090 3.2126 -1.4336 9 6 2.1078 4.2752 -2.0046 10 8 1.0520 4.1349 -2.5860 11 6 2.7414 5.6261 -1.9217 12 8 3.8559 5.7461 -1.4567 13 7 2.0752 6.7113 -2.3634 14 6 2.7321 8.0256 -2.4287 15 6 2.5181 8.6018 -3.8374 16 7 1.0816 8.6101 -4.1445 17 6 0.8172 9.3127 -5.4072 18 6 1.1669 10.7705 -5.2537 19 1 1.5479 11.1382 -4.3124 20 6 1.0005 11.6348 -6.3150 21 7 0.5370 11.1868 -7.4614 22 14 1.4333 13.4420 -6.1245 23 1 2.8712 13.5726 -5.7775 24 1 1.1661 14.1521 -7.4011 25 1 0.6071 14.0376 -5.0438 26 6 0.5357 7.2467 -4.1764 27 6 0.6702 6.6136 -2.7873 28 6 2.0612 1.8939 -1.4386 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8307 -0.5261 -0.7814 33 1 3.3604 0.9847 1.6214 34 1 4.0605 0.7574 0.0010 35 1 4.9283 2.8200 1.0898 36 1 3.2648 3.4403 1.2212 37 1 4.7651 2.7801 -1.3552 38 1 4.3115 4.4023 -0.7724 39 1 2.2924 8.6919 -1.6866 40 1 3.7989 7.9118 -2.2364 41 1 3.0428 7.9869 -4.5686 42 1 2.9040 9.6206 -3.8751 43 1 1.4236 8.8751 -6.2004 44 1 -0.2383 9.2171 -5.6621 45 1 0.4203 11.7949 -8.2081 46 1 1.0880 6.6506 -4.9028 47 1 -0.5163 7.2823 -4.4595 48 1 0.3732 5.5658 -2.8321 49 1 0.0361 7.1468 -2.0789 50 1 2.6413 1.2041 -2.0516 51 1 1.0522 1.9839 -1.8411 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601592187.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:37 Heat of formation + Delta-G solvation = -15.578898 kcal Electronic energy + Delta-G solvation = -30624.554253 eV Core-core repulsion = 26560.520673 eV Total energy + Delta-G solvation = -4064.033581 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.33440 -39.45930 -38.19168 -37.76674 -35.73694 -34.40673 -32.75731 -32.39750 -30.83107 -30.20310 -28.59126 -26.78511 -25.52715 -25.33641 -23.98497 -22.86695 -22.70302 -21.83762 -21.05487 -20.11875 -19.08279 -17.33285 -17.17464 -16.53993 -16.45169 -16.21363 -15.88107 -15.19610 -14.95215 -14.77612 -14.75147 -14.65920 -14.39625 -14.16043 -14.05585 -13.87384 -13.57617 -13.39594 -13.09608 -12.98217 -12.77007 -12.50961 -12.28465 -12.02854 -11.78627 -11.64185 -11.38737 -11.32478 -11.26088 -10.99846 -10.88942 -10.78206 -10.72727 -10.58251 -10.14404 -9.83778 -9.38215 -9.31945 -8.91287 -8.70427 -8.64519 -8.45943 -7.33239 -6.06244 -4.08401 1.25695 2.11429 3.04955 3.23960 3.31294 3.35674 3.38238 3.72706 3.99856 4.34487 4.39081 4.44519 4.70380 4.73485 4.84841 4.88030 4.95766 5.03729 5.16576 5.24961 5.28899 5.30635 5.32697 5.40705 5.50494 5.51282 5.55785 5.62787 5.65923 5.70536 5.77361 5.82121 5.84112 5.95670 6.01127 6.24773 6.30203 6.43833 6.45770 6.51340 6.61752 6.79285 6.87262 7.21262 7.27391 7.30644 7.60343 7.73788 7.88268 8.01293 8.11800 8.47459 8.98440 9.56028 11.04476 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.027127 B = 0.002260 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.936566 B =12383.902262 C =13103.485440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.683 5.683 3 C 0.074 3.926 4 H 0.083 0.917 5 C -0.110 4.110 6 C -0.132 4.132 7 C 0.042 3.958 8 N -0.575 5.575 9 C 0.512 3.488 10 O -0.511 6.511 11 C 0.507 3.493 12 O -0.522 6.522 13 N -0.564 5.564 14 C 0.110 3.890 15 C 0.052 3.948 16 N -0.538 5.538 17 C 0.194 3.806 18 C -0.510 4.510 19 H 0.063 0.937 20 C 0.056 3.944 21 N -0.898 5.898 22 Si 0.899 3.101 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.276 1.276 26 C 0.045 3.955 27 C 0.056 3.944 28 C 0.078 3.922 29 H 0.027 0.973 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.342 0.658 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.165 0.835 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.025 0.975 42 H 0.100 0.900 43 H -0.009 1.009 44 H 0.032 0.968 45 H 0.262 0.738 46 H 0.026 0.974 47 H 0.082 0.918 48 H 0.149 0.851 49 H 0.072 0.928 50 H 0.071 0.929 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.412 -21.599 15.734 27.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.313 5.313 3 C -0.037 4.037 4 H 0.101 0.899 5 C -0.148 4.148 6 C -0.170 4.170 7 C -0.078 4.078 8 N -0.308 5.308 9 C 0.296 3.704 10 O -0.389 6.389 11 C 0.290 3.710 12 O -0.403 6.403 13 N -0.295 5.295 14 C -0.012 4.012 15 C -0.077 4.077 16 N -0.263 5.263 17 C 0.069 3.931 18 C -0.549 4.549 19 H 0.081 0.919 20 C -0.146 4.146 21 N -0.537 5.537 22 Si 0.727 3.273 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.201 1.201 26 C -0.084 4.084 27 C -0.065 4.065 28 C -0.046 4.046 29 H 0.045 0.955 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.160 0.840 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.181 0.819 39 H 0.099 0.901 40 H 0.109 0.891 41 H 0.043 0.957 42 H 0.118 0.882 43 H 0.009 0.991 44 H 0.050 0.950 45 H 0.072 0.928 46 H 0.044 0.956 47 H 0.100 0.900 48 H 0.165 0.835 49 H 0.090 0.910 50 H 0.090 0.910 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.154 -21.358 16.519 27.318 hybrid contribution 0.301 0.755 -1.738 1.918 sum 4.456 -20.603 14.781 25.745 Atomic orbital electron populations 1.22279 0.87377 1.02121 1.00881 1.60609 1.08204 1.12771 1.49710 1.22001 0.97574 0.89516 0.94623 0.89900 1.21556 0.94717 0.96724 1.01773 1.21906 1.02104 0.96053 0.96969 1.23478 0.82204 1.09972 0.92191 1.47950 1.20603 1.07753 1.54465 1.20274 0.84783 0.85924 0.79435 1.90356 1.22459 1.83608 1.42432 1.19885 0.85851 0.85516 0.79710 1.90222 1.20048 1.84180 1.45825 1.48206 1.13883 1.07854 1.59538 1.22193 0.98286 0.81599 0.99112 1.22419 0.90483 1.01769 0.93069 1.62123 1.12643 1.13291 1.38273 1.19721 0.96724 0.93278 0.83374 1.21102 1.43249 0.92669 0.97883 0.91855 1.25003 0.95359 0.99071 0.95172 1.69954 1.45779 1.35518 1.02443 0.86541 0.78886 0.84603 0.77260 1.20254 1.21373 1.20128 1.22341 1.00823 0.90469 0.94769 1.23406 0.79447 1.07225 0.96438 1.22540 0.99826 0.83898 0.98338 0.95460 0.91194 0.91529 0.83978 0.90893 0.91752 0.90151 0.91575 0.91607 0.81949 0.90109 0.89097 0.95654 0.88201 0.99122 0.94992 0.92815 0.95583 0.89975 0.83475 0.90986 0.91028 0.88925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 10.50 60.07 0.63 0.77 16 2 N -0.68 -4.56 6.61 -113.88 -0.75 -5.31 16 3 C 0.07 0.56 2.62 -67.59 -0.18 0.38 16 4 H 0.08 0.73 7.80 -51.93 -0.41 0.32 16 5 C -0.11 -0.76 5.49 -26.69 -0.15 -0.90 16 6 C -0.13 -0.99 6.08 -26.61 -0.16 -1.15 16 7 C 0.04 0.39 6.26 -3.71 -0.02 0.37 16 8 N -0.57 -6.19 2.97 -173.28 -0.52 -6.70 16 9 C 0.51 6.87 7.65 -11.59 -0.09 6.78 16 10 O -0.51 -7.58 12.56 5.50 0.07 -7.51 16 11 C 0.51 7.40 7.67 -11.59 -0.09 7.32 16 12 O -0.52 -7.76 12.51 5.50 0.07 -7.70 16 13 N -0.56 -8.73 3.00 -172.69 -0.52 -9.25 16 14 C 0.11 1.73 6.60 -3.37 -0.02 1.70 16 15 C 0.05 0.98 5.47 -3.46 -0.02 0.96 16 16 N -0.54 -11.40 4.62 -235.46 -1.09 -12.49 16 17 C 0.19 4.99 4.72 -4.98 -0.02 4.96 16 18 C -0.51 -14.03 8.41 -34.44 -0.29 -14.32 16 19 H 0.06 1.70 7.13 -52.49 -0.37 1.33 16 20 C 0.06 1.56 5.46 -17.81 -0.10 1.46 16 21 N -0.90 -26.47 13.29 55.43 0.74 -25.73 16 22 Si 0.90 21.36 29.54 -169.99 -5.02 16.33 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 C 0.05 0.83 5.62 -3.70 -0.02 0.80 16 27 C 0.06 0.87 6.45 -3.60 -0.02 0.84 16 28 C 0.08 0.69 5.68 -3.71 -0.02 0.66 16 29 H 0.03 0.18 7.56 -51.93 -0.39 -0.21 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.43 8.06 -51.93 -0.42 0.01 16 32 H 0.34 1.89 8.50 -39.29 -0.33 1.55 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.16 1.87 3.74 -57.09 -0.21 1.66 16 39 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 40 H 0.09 1.34 7.12 -51.93 -0.37 0.97 16 41 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.10 2.00 6.67 -51.93 -0.35 1.65 16 43 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 44 H 0.03 0.88 7.97 -51.92 -0.41 0.46 16 45 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 46 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.08 1.46 7.99 -51.93 -0.41 1.04 16 48 H 0.15 2.24 3.83 -56.50 -0.22 2.03 16 49 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 50 H 0.07 0.55 8.04 -51.93 -0.42 0.13 16 51 H 0.09 0.92 6.50 -51.93 -0.34 0.58 16 LS Contribution 389.84 15.07 5.87 5.87 Total: -1.00 -30.35 389.84 -10.15 -40.50 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -8.44 Total: 1.32 kcal Atomic # 6 Polarization: 11.22 SS G_CDS: -0.57 Total: 10.65 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: -2.14 Total: -59.48 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: 0.14 Total: -15.20 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.35 -10.15 -40.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601592187.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.922 kcal (2) G-P(sol) polarization free energy of solvation -30.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds