Wall clock time and date at job start Tue Mar 31 2020 20:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46895 * 110.99650 * 2 1 4 4 H 1.08998 * 109.52648 * 35.08047 * 3 2 1 5 5 C 1.53043 * 109.49516 * 155.15864 * 3 2 1 6 6 C 1.53046 * 109.54032 * 181.31535 * 5 3 2 7 7 C 1.53191 * 109.31086 * 298.63954 * 6 5 3 8 8 N 1.46925 * 108.77945 * 54.63184 * 7 6 5 9 9 C 1.34775 * 120.62949 * 126.41133 * 8 7 6 10 10 O 1.21350 * 119.99638 * 176.39326 * 9 8 7 11 11 C 1.49445 * 120.00327 * 356.39467 * 9 8 7 12 12 O 1.21351 * 120.00099 * 7.19576 * 11 9 8 13 13 N 1.34779 * 120.00470 * 187.19593 * 11 9 8 14 14 C 1.47075 * 120.88280 * 186.76847 * 13 11 9 15 15 C 1.53696 * 108.27567 * 128.75353 * 14 13 11 16 16 N 1.46902 * 109.26063 * 54.07995 * 15 14 13 17 17 C 1.46898 * 111.00022 * 172.60461 * 16 15 14 18 18 C 1.50698 * 109.47289 * 294.30249 * 17 16 15 19 19 H 1.07999 * 120.00192 * 0.02562 * 18 17 16 20 20 C 1.37879 * 119.99970 * 180.02562 * 18 17 16 21 21 N 1.31523 * 119.99654 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00132 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46897 * 60.00037 * 22 20 18 24 24 H 1.48499 * 109.47076 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47157 * 300.00194 * 22 20 18 26 26 C 1.46899 * 111.26762 * 296.75640 * 16 15 14 27 27 C 1.47085 * 120.87489 * 7.03931 * 13 11 9 28 28 C 1.46927 * 118.73875 * 306.39231 * 8 7 6 29 29 H 1.08999 * 109.46948 * 60.00117 * 1 2 3 30 30 H 1.09001 * 109.46938 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47458 * 300.00020 * 1 2 3 32 32 H 1.00903 * 111.00146 * 236.04869 * 2 1 3 33 33 H 1.09001 * 109.46174 * 301.33584 * 5 3 2 34 34 H 1.09001 * 109.46033 * 61.30087 * 5 3 2 35 35 H 1.08990 * 109.49943 * 178.68276 * 6 5 3 36 36 H 1.09004 * 109.52070 * 58.60081 * 6 5 3 37 37 H 1.09004 * 109.58525 * 294.83971 * 7 6 5 38 38 H 1.08998 * 109.58284 * 174.42158 * 7 6 5 39 39 H 1.09001 * 109.62432 * 248.51590 * 14 13 11 40 40 H 1.08995 * 109.63372 * 9.09902 * 14 13 11 41 41 H 1.09001 * 109.64846 * 294.07645 * 15 14 13 42 42 H 1.09000 * 109.44263 * 173.95881 * 15 14 13 43 43 H 1.09006 * 109.47149 * 54.30556 * 17 16 15 44 44 H 1.09009 * 109.46818 * 174.30128 * 17 16 15 45 45 H 0.97000 * 119.99345 * 180.02562 * 21 20 18 46 46 H 1.08997 * 109.49528 * 303.14291 * 26 16 15 47 47 H 1.08998 * 109.51198 * 183.07482 * 26 16 15 48 48 H 1.08998 * 109.63197 * 350.90328 * 27 13 11 49 49 H 1.09003 * 109.62515 * 111.48269 * 27 13 11 50 50 H 1.09000 * 109.58625 * 293.82231 * 28 8 7 51 51 H 1.08999 * 109.58706 * 173.39114 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3411 2.0128 0.5904 5 6 3.4007 1.3791 0.6061 6 6 3.9371 2.8122 0.6367 7 6 4.0248 3.3510 -0.7947 8 7 2.7090 3.2126 -1.4336 9 6 2.1078 4.2752 -2.0046 10 8 1.0520 4.1349 -2.5860 11 6 2.7414 5.6261 -1.9217 12 8 3.8559 5.7461 -1.4567 13 7 2.0752 6.7113 -2.3634 14 6 2.7321 8.0256 -2.4287 15 6 2.5181 8.6018 -3.8374 16 7 1.0816 8.6101 -4.1445 17 6 0.8172 9.3127 -5.4072 18 6 1.1669 10.7705 -5.2537 19 1 1.5479 11.1382 -4.3124 20 6 1.0005 11.6348 -6.3150 21 7 0.5370 11.1868 -7.4614 22 14 1.4333 13.4420 -6.1245 23 1 2.8712 13.5726 -5.7775 24 1 1.1661 14.1521 -7.4011 25 1 0.6071 14.0376 -5.0438 26 6 0.5357 7.2467 -4.1764 27 6 0.6702 6.6136 -2.7873 28 6 2.0612 1.8939 -1.4386 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8307 -0.5261 -0.7814 33 1 3.3604 0.9847 1.6214 34 1 4.0605 0.7574 0.0010 35 1 4.9283 2.8200 1.0898 36 1 3.2648 3.4403 1.2212 37 1 4.7651 2.7801 -1.3552 38 1 4.3115 4.4023 -0.7724 39 1 2.2924 8.6919 -1.6866 40 1 3.7989 7.9118 -2.2364 41 1 3.0428 7.9869 -4.5686 42 1 2.9040 9.6206 -3.8751 43 1 1.4236 8.8751 -6.2004 44 1 -0.2383 9.2171 -5.6621 45 1 0.4203 11.7949 -8.2081 46 1 1.0880 6.6506 -4.9028 47 1 -0.5163 7.2823 -4.4595 48 1 0.3732 5.5658 -2.8321 49 1 0.0361 7.1468 -2.0789 50 1 2.6413 1.2041 -2.0516 51 1 1.0522 1.9839 -1.8411 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601592187.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:36 Heat of formation + Delta-G solvation = -38.206690 kcal Electronic energy + Delta-G solvation = -30625.535468 eV Core-core repulsion = 26560.520673 eV Total energy + Delta-G solvation = -4065.014795 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.39539 -40.49321 -39.21662 -39.05441 -36.64230 -35.79923 -34.41246 -33.47475 -32.21788 -30.89434 -30.27571 -28.03882 -26.93558 -25.99270 -25.26392 -24.22034 -23.50533 -23.35747 -22.12820 -21.12209 -20.30061 -18.58544 -18.34868 -18.18309 -17.55539 -17.26408 -16.78404 -16.65040 -16.13912 -16.01040 -15.82680 -15.75390 -15.44003 -15.39280 -15.30346 -14.96819 -14.75821 -14.43883 -14.18427 -14.01069 -13.73954 -13.66643 -13.58988 -13.15338 -13.01619 -12.83930 -12.72221 -12.54737 -12.40201 -12.36838 -12.35419 -12.24115 -11.94580 -11.82025 -11.59197 -11.43869 -11.02402 -10.62413 -10.14035 -10.07654 -9.86463 -9.37564 -9.11327 -8.21308 -6.31982 0.15500 1.08928 1.42301 1.45445 1.53223 1.94533 2.18145 2.40349 2.91963 3.10621 3.18582 3.22443 3.71420 3.76577 3.87163 3.98477 4.04930 4.09263 4.18182 4.21708 4.27388 4.34775 4.39004 4.49690 4.52988 4.58093 4.62664 4.67712 4.77142 4.82454 4.88875 4.89376 4.92269 4.97575 5.03445 5.04516 5.13067 5.19184 5.22053 5.29386 5.36134 5.46878 5.61908 5.82231 5.93639 6.00339 6.12723 6.24615 6.38253 6.52981 6.54987 6.76579 6.83250 7.37855 8.89784 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.027127 B = 0.002260 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.936566 B =12383.902262 C =13103.485440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.683 5.683 3 C 0.081 3.919 4 H 0.069 0.931 5 C -0.104 4.104 6 C -0.125 4.125 7 C 0.040 3.960 8 N -0.566 5.566 9 C 0.508 3.492 10 O -0.531 6.531 11 C 0.508 3.492 12 O -0.524 6.524 13 N -0.574 5.574 14 C 0.122 3.878 15 C 0.054 3.946 16 N -0.540 5.540 17 C 0.209 3.791 18 C -0.524 4.524 19 H 0.069 0.931 20 C 0.000 4.000 21 N -0.936 5.936 22 Si 0.972 3.028 23 H -0.266 1.266 24 H -0.286 1.286 25 H -0.267 1.267 26 C 0.045 3.955 27 C 0.070 3.930 28 C 0.078 3.922 29 H 0.021 0.979 30 H 0.082 0.918 31 H 0.061 0.939 32 H 0.351 0.649 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.057 0.943 37 H 0.080 0.920 38 H 0.147 0.853 39 H 0.091 0.909 40 H 0.105 0.895 41 H 0.012 0.988 42 H 0.088 0.912 43 H -0.042 1.042 44 H 0.007 0.993 45 H 0.264 0.736 46 H 0.014 0.986 47 H 0.083 0.917 48 H 0.157 0.843 49 H 0.081 0.919 50 H 0.088 0.912 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.524 -22.491 17.769 29.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.313 5.313 3 C -0.030 4.030 4 H 0.088 0.912 5 C -0.142 4.142 6 C -0.164 4.164 7 C -0.080 4.080 8 N -0.297 5.297 9 C 0.291 3.709 10 O -0.411 6.411 11 C 0.292 3.708 12 O -0.404 6.404 13 N -0.305 5.305 14 C 0.001 3.999 15 C -0.075 4.075 16 N -0.265 5.265 17 C 0.082 3.918 18 C -0.562 4.562 19 H 0.087 0.913 20 C -0.198 4.198 21 N -0.576 5.576 22 Si 0.796 3.204 23 H -0.191 1.191 24 H -0.211 1.211 25 H -0.192 1.192 26 C -0.083 4.083 27 C -0.051 4.051 28 C -0.045 4.045 29 H 0.040 0.960 30 H 0.101 0.899 31 H 0.080 0.920 32 H 0.170 0.830 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.116 0.884 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.163 0.837 39 H 0.109 0.891 40 H 0.123 0.877 41 H 0.031 0.969 42 H 0.106 0.894 43 H -0.024 1.024 44 H 0.025 0.975 45 H 0.073 0.927 46 H 0.032 0.968 47 H 0.101 0.899 48 H 0.173 0.827 49 H 0.099 0.901 50 H 0.106 0.894 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.301 -22.299 18.600 29.518 hybrid contribution -0.003 0.894 -2.352 2.516 sum 5.298 -21.405 16.248 27.390 Atomic orbital electron populations 1.22294 0.87141 1.02817 1.00399 1.60639 1.08470 1.12079 1.50118 1.21907 0.97926 0.89742 0.93404 0.91222 1.21515 0.94182 0.96363 1.02115 1.21867 1.02997 0.96142 0.95368 1.23480 0.81656 1.09204 0.93623 1.48071 1.20828 1.07794 1.53043 1.20074 0.84767 0.86022 0.80004 1.90328 1.23292 1.83712 1.43719 1.20133 0.85731 0.85775 0.79169 1.90266 1.20016 1.84525 1.45565 1.48230 1.13870 1.08095 1.60316 1.22027 0.99292 0.81950 0.96674 1.22405 0.88804 1.01218 0.95069 1.62065 1.14258 1.14833 1.35348 1.19377 0.94404 0.93430 0.84547 1.21425 1.43097 0.93495 0.98170 0.91332 1.25958 0.95066 1.04067 0.94706 1.70095 1.46878 1.37279 1.03337 0.85396 0.79127 0.78489 0.77369 1.19064 1.21130 1.19174 1.22412 1.00458 0.88836 0.96644 1.23294 0.79891 1.07422 0.94468 1.22703 0.99268 0.82972 0.99585 0.96015 0.89929 0.91969 0.83037 0.90482 0.90757 0.88387 0.92437 0.90213 0.83676 0.89088 0.87720 0.96948 0.89365 1.02414 0.97515 0.92698 0.96800 0.89903 0.82666 0.90105 0.89398 0.90162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.50 127.69 1.34 1.59 16 2 N -0.68 -7.71 6.61 -514.20 -3.40 -11.11 16 3 C 0.08 1.07 2.62 44.99 0.12 1.19 16 4 H 0.07 1.13 7.80 -2.39 -0.02 1.11 16 5 C -0.10 -1.15 5.49 30.62 0.17 -0.98 16 6 C -0.13 -1.57 6.08 30.67 0.19 -1.38 16 7 C 0.04 0.68 6.26 86.36 0.54 1.22 16 8 N -0.57 -11.32 2.97 -820.49 -2.44 -13.76 16 9 C 0.51 13.18 7.65 87.27 0.67 13.85 16 10 O -0.53 -15.47 12.56 -3.25 -0.04 -15.51 16 11 C 0.51 14.33 7.67 87.27 0.67 15.00 16 12 O -0.52 -14.87 12.51 -3.25 -0.04 -14.91 16 13 N -0.57 -17.33 3.00 -818.62 -2.46 -19.79 16 14 C 0.12 3.74 6.60 86.50 0.57 4.31 16 15 C 0.05 2.08 5.47 86.54 0.47 2.56 16 16 N -0.54 -23.46 4.62 -898.86 -4.15 -27.61 16 17 C 0.21 11.20 4.72 85.56 0.40 11.61 16 18 C -0.52 -29.33 8.41 25.60 0.22 -29.12 16 19 H 0.07 3.69 7.13 -2.91 -0.02 3.67 16 20 C 0.00 0.00 5.46 84.65 0.46 0.47 16 21 N -0.94 -56.47 13.29 21.45 0.28 -56.19 16 22 Si 0.97 43.86 29.54 68.60 2.03 45.89 16 23 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 24 H -0.29 -12.70 7.11 99.48 0.71 -12.00 16 25 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 26 C 0.05 1.70 5.62 86.38 0.49 2.18 16 27 C 0.07 2.15 6.45 86.35 0.56 2.71 16 28 C 0.08 1.24 5.68 86.36 0.49 1.73 16 29 H 0.02 0.26 7.56 -2.39 -0.02 0.24 16 30 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 0.74 8.06 -2.39 -0.02 0.72 16 32 H 0.35 3.03 8.50 -89.69 -0.76 2.27 16 33 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.10 0.92 8.14 -2.39 -0.02 0.91 16 36 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 37 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 38 H 0.15 3.10 3.74 -84.16 -0.31 2.78 16 39 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 40 H 0.10 2.93 7.12 -2.39 -0.02 2.91 16 41 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.09 3.59 6.67 -2.39 -0.02 3.57 16 43 H -0.04 -2.47 8.12 -2.38 -0.02 -2.49 16 44 H 0.01 0.39 7.97 -2.38 -0.02 0.37 16 45 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 46 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 47 H 0.08 3.04 7.99 -2.39 -0.02 3.02 16 48 H 0.16 4.67 3.83 -74.82 -0.29 4.39 16 49 H 0.08 2.34 8.14 -2.39 -0.02 2.33 16 50 H 0.09 1.14 8.04 -2.39 -0.02 1.12 16 51 H 0.08 1.52 6.50 -2.39 -0.02 1.50 16 Total: -1.00 -65.96 389.84 -3.28 -69.24 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -0.41 Total: 16.83 kcal Atomic # 6 Polarization: 19.57 SS G_CDS: 7.35 Total: 26.92 kcal Atomic # 7 Polarization: -116.30 SS G_CDS: -12.16 Total: -128.46 kcal Atomic # 8 Polarization: -30.34 SS G_CDS: -0.08 Total: -30.42 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -65.96 -3.28 -69.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601592187.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.033 kcal (2) G-P(sol) polarization free energy of solvation -65.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds