Wall clock time and date at job start Tue Mar 31 2020 20:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.34779 * 120.00361 * 2 1 4 4 O 1.21288 * 119.99457 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00349 * 180.02562 * 3 2 1 6 6 H 1.09000 * 109.49721 * 299.93273 * 5 3 2 7 7 C 1.53041 * 109.49692 * 179.83789 * 5 3 2 8 8 C 1.53042 * 109.53972 * 178.68157 * 7 5 3 9 9 C 1.52765 * 109.38000 * 61.23808 * 8 7 5 10 10 N 1.46922 * 109.01208 * 305.59029 * 9 8 7 11 11 C 1.34772 * 120.63311 * 233.58741 * 10 9 8 12 12 O 1.21580 * 120.00238 * 173.98888 * 11 10 9 13 13 N 1.34785 * 119.99928 * 353.98500 * 11 10 9 14 14 C 1.46494 * 119.99811 * 184.95591 * 13 11 10 15 15 C 1.53046 * 109.45578 * 204.99738 * 14 13 11 16 16 C 1.53188 * 109.30955 * 178.61592 * 15 14 13 17 17 N 1.46926 * 108.89704 * 54.56517 * 16 15 14 18 18 C 1.36936 * 120.63097 * 126.45917 * 17 16 15 19 19 H 1.07996 * 120.00177 * 324.44228 * 18 17 16 20 20 C 1.38811 * 119.99870 * 144.44310 * 18 17 16 21 21 N 1.31624 * 120.00313 * 3.73785 * 20 18 17 22 22 Si 1.86805 * 119.99874 * 183.73875 * 20 18 17 23 23 H 1.48498 * 109.47301 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47078 * 120.00312 * 22 20 18 25 25 H 1.48501 * 109.47207 * 239.99752 * 22 20 18 26 26 C 1.46956 * 118.71570 * 306.64108 * 17 16 15 27 27 C 1.53042 * 109.46226 * 84.93500 * 14 13 11 28 28 C 1.46924 * 118.73747 * 53.30607 * 10 9 8 29 29 H 1.08996 * 109.47506 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47305 * 300.00172 * 1 2 3 31 31 H 1.09001 * 109.47430 * 60.00031 * 1 2 3 32 32 H 0.97001 * 120.00436 * 180.02562 * 2 1 3 33 33 H 1.08998 * 109.46158 * 298.70386 * 7 5 3 34 34 H 1.09004 * 109.46237 * 58.67712 * 7 5 3 35 35 H 1.08995 * 109.49942 * 181.31424 * 8 7 5 36 36 H 1.08999 * 109.49980 * 301.38356 * 8 7 5 37 37 H 1.09001 * 109.50817 * 185.70335 * 9 8 7 38 38 H 1.09005 * 109.42667 * 65.42760 * 9 8 7 39 39 H 0.97004 * 119.99500 * 4.95583 * 13 11 10 40 40 H 1.08996 * 109.45430 * 324.96178 * 14 13 11 41 41 H 1.08995 * 109.49665 * 58.66663 * 15 14 13 42 42 H 1.08998 * 109.52530 * 298.58204 * 15 14 13 43 43 H 1.09003 * 109.58843 * 174.42350 * 16 15 14 44 44 H 1.09002 * 109.59159 * 294.70491 * 16 15 14 45 45 H 0.96992 * 119.99796 * 179.97438 * 21 20 18 46 46 H 1.09000 * 109.46978 * 293.57582 * 26 17 16 47 47 H 1.08994 * 109.71591 * 173.28494 * 26 17 16 48 48 H 1.09008 * 109.49090 * 301.33370 * 27 14 13 49 49 H 1.08997 * 109.49914 * 61.39734 * 27 14 13 50 50 H 1.09001 * 109.58644 * 66.43109 * 28 10 9 51 51 H 1.08998 * 109.58727 * 186.85740 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2175 0.0005 5 6 3.6458 1.1672 -0.0006 6 1 4.0100 0.6543 0.8896 7 6 4.1566 2.6098 -0.0045 8 6 5.6867 2.6112 0.0280 9 6 6.2209 1.9053 -1.2170 10 7 5.6200 0.5673 -1.3035 11 6 6.3964 -0.5278 -1.4224 12 8 5.8959 -1.6351 -1.3832 13 7 7.7279 -0.3955 -1.5850 14 6 8.5579 -1.5789 -1.8229 15 6 9.9906 -1.2974 -1.3641 16 6 10.8474 -2.5483 -1.5824 17 7 10.7344 -2.9633 -2.9873 18 6 11.8550 -3.1503 -3.7518 19 1 12.7164 -2.5141 -3.6121 20 6 11.8836 -4.1576 -4.7065 21 7 10.8093 -4.8851 -4.9282 22 14 13.4470 -4.4808 -5.6766 23 1 14.5045 -3.5335 -5.2412 24 1 13.9007 -5.8739 -5.4345 25 1 13.1787 -4.2923 -7.1250 26 6 9.3956 -3.1698 -3.5570 27 6 8.5550 -1.9119 -3.3167 28 6 4.1567 0.4454 -1.2515 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.9500 -0.8400 -0.0004 33 1 3.8122 3.1145 -0.9071 34 1 3.7745 3.1328 0.8722 35 1 6.0493 3.6388 0.0488 36 1 6.0321 2.0855 0.9182 37 1 7.3049 1.8152 -1.1474 38 1 5.9562 2.4827 -2.1028 39 1 8.1364 0.4834 -1.5444 40 1 8.1562 -2.4228 -1.2620 41 1 9.9891 -1.0375 -0.3056 42 1 10.4019 -0.4694 -1.9415 43 1 11.8884 -2.3232 -1.3505 44 1 10.4942 -3.3508 -0.9348 45 1 10.8293 -5.5887 -5.5955 46 1 8.9223 -4.0236 -3.0723 47 1 9.4765 -3.3561 -4.6279 48 1 7.5317 -2.0893 -3.6478 49 1 8.9790 -1.0780 -3.8761 50 1 3.7203 0.9014 -2.1402 51 1 3.8792 -0.6076 -1.2047 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609640053.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:40 Heat of formation + Delta-G solvation = -45.248400 kcal Electronic energy + Delta-G solvation = -30317.879097 eV Core-core repulsion = 26252.558950 eV Total energy + Delta-G solvation = -4065.320147 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.86074 -39.83085 -37.92130 -36.88636 -34.97430 -34.49142 -33.19718 -32.05259 -31.60018 -29.95292 -29.34654 -27.32264 -25.78802 -24.70327 -24.05152 -22.21450 -22.05597 -21.49017 -20.42074 -19.71599 -19.27104 -18.27146 -17.34381 -16.74959 -16.42282 -16.26077 -15.77795 -15.24734 -14.94387 -14.67429 -14.49125 -14.42371 -14.17909 -13.84050 -13.66616 -13.43318 -13.29532 -13.16823 -12.98749 -12.82956 -12.62835 -12.50735 -12.30082 -11.84449 -11.50644 -11.36485 -11.30648 -10.97964 -10.93548 -10.90953 -10.79337 -10.33223 -10.24707 -10.15007 -10.08252 -9.91387 -9.79728 -9.59451 -9.49709 -8.91465 -8.53957 -8.37069 -6.55504 -5.78046 -3.31917 2.22753 2.61032 2.90120 3.29571 3.36337 3.43761 3.45495 3.90014 4.25792 4.36643 4.47539 4.51108 4.63333 4.71440 4.87348 4.95543 5.10349 5.14121 5.23713 5.31904 5.39456 5.41193 5.43141 5.46546 5.49932 5.51335 5.59203 5.69314 5.76308 5.86046 5.94614 6.03783 6.12498 6.24319 6.26823 6.41634 6.48917 6.62667 6.68700 6.79961 6.89955 6.97435 7.07713 7.08918 7.47636 7.78615 7.84334 7.85353 8.04014 8.53376 8.70882 9.24888 9.83497 10.43578 11.28153 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.024666 B = 0.002171 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.900114 B =12893.295342 C =13558.410356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.735 5.735 3 C 0.522 3.478 4 O -0.538 6.538 5 C -0.124 4.124 6 H 0.103 0.897 7 C -0.097 4.097 8 C -0.135 4.135 9 C 0.110 3.890 10 N -0.633 5.633 11 C 0.708 3.292 12 O -0.587 6.587 13 N -0.738 5.738 14 C 0.166 3.834 15 C -0.139 4.139 16 C 0.149 3.851 17 N -0.594 5.594 18 C -0.255 4.255 19 H 0.064 0.936 20 C 0.008 3.992 21 N -0.902 5.902 22 Si 0.903 3.097 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.290 1.290 26 C 0.170 3.830 27 C -0.147 4.147 28 C 0.142 3.858 29 H 0.076 0.924 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.406 0.594 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.389 0.611 40 H 0.082 0.918 41 H 0.054 0.946 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.020 0.980 45 H 0.254 0.746 46 H 0.018 0.982 47 H 0.100 0.900 48 H 0.050 0.950 49 H 0.052 0.948 50 H 0.068 0.932 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.397 14.331 10.960 23.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.387 5.387 3 C 0.307 3.693 4 O -0.415 6.415 5 C -0.147 4.147 6 H 0.121 0.879 7 C -0.135 4.135 8 C -0.174 4.174 9 C -0.014 4.014 10 N -0.371 5.371 11 C 0.409 3.591 12 O -0.465 6.465 13 N -0.393 5.393 14 C 0.063 3.937 15 C -0.179 4.179 16 C 0.022 3.978 17 N -0.317 5.317 18 C -0.384 4.384 19 H 0.082 0.918 20 C -0.190 4.190 21 N -0.546 5.546 22 Si 0.733 3.267 23 H -0.202 1.202 24 H -0.215 1.215 25 H -0.217 1.217 26 C 0.044 3.956 27 C -0.188 4.188 28 C 0.018 3.982 29 H 0.095 0.905 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.240 0.760 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.225 0.775 40 H 0.100 0.900 41 H 0.072 0.928 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.038 0.962 45 H 0.065 0.935 46 H 0.036 0.964 47 H 0.118 0.882 48 H 0.069 0.931 49 H 0.070 0.930 50 H 0.087 0.913 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -16.197 14.090 10.834 24.046 hybrid contribution 1.087 -0.143 -0.464 1.191 sum -15.110 13.946 10.370 23.029 Atomic orbital electron populations 1.21549 0.79533 1.02409 1.02276 1.45899 1.07958 1.09034 1.75823 1.20532 0.89736 0.83583 0.75429 1.90704 1.70318 1.31309 1.49121 1.21783 0.91430 0.99942 1.01510 0.87931 1.21314 0.94619 0.93825 1.03783 1.21883 0.95795 1.01249 0.98429 1.21564 0.97924 0.83422 0.98449 1.47205 1.05752 1.05484 1.78694 1.15871 0.81786 0.83807 0.77612 1.90906 1.73303 1.23823 1.58494 1.45719 1.05407 1.11289 1.76918 1.20951 0.89130 0.86183 0.97461 1.22342 0.94804 1.01357 0.99355 1.20852 0.96989 0.92308 0.87660 1.44047 1.02509 1.79996 1.05187 1.19174 0.93512 1.10375 1.15382 0.91838 1.25352 0.97106 0.96028 1.00545 1.69913 1.26802 1.22657 1.35261 0.86214 0.83259 0.77918 0.79352 1.20240 1.21500 1.21682 1.20937 0.82840 0.90294 1.01530 1.22620 1.00151 1.01833 0.94162 1.21257 0.79417 1.02008 0.95518 0.90502 0.92263 0.92157 0.75985 0.90881 0.90838 0.90075 0.91261 0.90141 0.91176 0.77512 0.90009 0.92753 0.92044 0.92396 0.96175 0.93518 0.96430 0.88193 0.93092 0.92961 0.91338 0.88359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.54 10.70 59.84 0.64 1.18 16 2 N -0.74 -5.46 5.62 -67.09 -0.38 -5.83 16 3 C 0.52 5.05 7.16 -10.99 -0.08 4.97 16 4 O -0.54 -7.03 15.98 5.55 0.09 -6.94 16 5 C -0.12 -1.05 2.68 -91.65 -0.25 -1.29 16 6 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 7 C -0.10 -0.77 4.46 -26.69 -0.12 -0.89 16 8 C -0.14 -0.90 6.07 -26.83 -0.16 -1.06 16 9 C 0.11 0.87 6.35 -3.93 -0.02 0.84 16 10 N -0.63 -6.94 2.98 -178.76 -0.53 -7.47 16 11 C 0.71 10.55 8.26 -86.92 -0.72 9.84 16 12 O -0.59 -11.05 15.39 5.30 0.08 -10.97 16 13 N -0.74 -10.41 4.99 -58.64 -0.29 -10.70 16 14 C 0.17 2.90 2.46 -67.89 -0.17 2.73 16 15 C -0.14 -2.28 5.55 -26.61 -0.15 -2.43 16 16 C 0.15 3.04 6.51 -3.71 -0.02 3.02 16 17 N -0.59 -14.77 3.00 -172.30 -0.52 -15.28 16 18 C -0.25 -6.89 9.55 -15.06 -0.14 -7.04 16 19 H 0.06 1.68 7.83 -52.49 -0.41 1.27 16 20 C 0.01 0.23 5.31 -17.43 -0.09 0.14 16 21 N -0.90 -26.06 10.66 55.49 0.59 -25.47 16 22 Si 0.90 21.45 29.56 -169.99 -5.02 16.43 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 C 0.17 4.15 5.25 -3.69 -0.02 4.13 16 27 C -0.15 -2.95 5.65 -26.61 -0.15 -3.10 16 28 C 0.14 1.38 5.58 -3.71 -0.02 1.36 16 29 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.41 2.33 8.37 -40.82 -0.34 1.99 16 33 H 0.07 0.63 8.13 -51.93 -0.42 0.20 16 34 H 0.07 0.61 8.07 -51.93 -0.42 0.19 16 35 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.57 5.66 -51.93 -0.29 0.28 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.39 4.39 6.10 -40.82 -0.25 4.14 16 40 H 0.08 1.62 7.51 -51.93 -0.39 1.23 16 41 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.06 1.14 7.93 -51.93 -0.41 0.72 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 46 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.10 2.74 5.97 -51.93 -0.31 2.43 16 48 H 0.05 1.04 8.14 -51.92 -0.42 0.62 16 49 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 50 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 51 H 0.10 1.04 6.59 -51.93 -0.34 0.70 16 LS Contribution 395.50 15.07 5.96 5.96 Total: -1.00 -34.07 395.50 -10.14 -44.21 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -8.64 Total: 3.66 kcal Atomic # 6 Polarization: 13.88 SS G_CDS: -1.47 Total: 12.41 kcal Atomic # 7 Polarization: -63.64 SS G_CDS: -1.13 Total: -64.76 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: 0.17 Total: -17.91 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.07 -10.14 -44.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609640053.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.037 kcal (2) G-P(sol) polarization free energy of solvation -34.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds