Wall clock time and date at job start Tue Mar 31 2020 20:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.34779 * 120.00361 * 2 1 4 4 O 1.21288 * 119.99457 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00349 * 180.02562 * 3 2 1 6 6 H 1.09000 * 109.49721 * 299.93273 * 5 3 2 7 7 C 1.53041 * 109.49692 * 179.83789 * 5 3 2 8 8 C 1.53042 * 109.53972 * 178.68157 * 7 5 3 9 9 C 1.52765 * 109.38000 * 61.23808 * 8 7 5 10 10 N 1.46922 * 109.01208 * 305.59029 * 9 8 7 11 11 C 1.34772 * 120.63311 * 233.58741 * 10 9 8 12 12 O 1.21580 * 120.00238 * 173.98888 * 11 10 9 13 13 N 1.34785 * 119.99928 * 353.98500 * 11 10 9 14 14 C 1.46494 * 119.99811 * 184.95591 * 13 11 10 15 15 C 1.53046 * 109.45578 * 204.99738 * 14 13 11 16 16 C 1.53188 * 109.30955 * 178.61592 * 15 14 13 17 17 N 1.46926 * 108.89704 * 54.56517 * 16 15 14 18 18 C 1.36936 * 120.63097 * 126.45917 * 17 16 15 19 19 H 1.07996 * 120.00177 * 324.44228 * 18 17 16 20 20 C 1.38811 * 119.99870 * 144.44310 * 18 17 16 21 21 N 1.31624 * 120.00313 * 3.73785 * 20 18 17 22 22 Si 1.86805 * 119.99874 * 183.73875 * 20 18 17 23 23 H 1.48498 * 109.47301 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47078 * 120.00312 * 22 20 18 25 25 H 1.48501 * 109.47207 * 239.99752 * 22 20 18 26 26 C 1.46956 * 118.71570 * 306.64108 * 17 16 15 27 27 C 1.53042 * 109.46226 * 84.93500 * 14 13 11 28 28 C 1.46924 * 118.73747 * 53.30607 * 10 9 8 29 29 H 1.08996 * 109.47506 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47305 * 300.00172 * 1 2 3 31 31 H 1.09001 * 109.47430 * 60.00031 * 1 2 3 32 32 H 0.97001 * 120.00436 * 180.02562 * 2 1 3 33 33 H 1.08998 * 109.46158 * 298.70386 * 7 5 3 34 34 H 1.09004 * 109.46237 * 58.67712 * 7 5 3 35 35 H 1.08995 * 109.49942 * 181.31424 * 8 7 5 36 36 H 1.08999 * 109.49980 * 301.38356 * 8 7 5 37 37 H 1.09001 * 109.50817 * 185.70335 * 9 8 7 38 38 H 1.09005 * 109.42667 * 65.42760 * 9 8 7 39 39 H 0.97004 * 119.99500 * 4.95583 * 13 11 10 40 40 H 1.08996 * 109.45430 * 324.96178 * 14 13 11 41 41 H 1.08995 * 109.49665 * 58.66663 * 15 14 13 42 42 H 1.08998 * 109.52530 * 298.58204 * 15 14 13 43 43 H 1.09003 * 109.58843 * 174.42350 * 16 15 14 44 44 H 1.09002 * 109.59159 * 294.70491 * 16 15 14 45 45 H 0.96992 * 119.99796 * 179.97438 * 21 20 18 46 46 H 1.09000 * 109.46978 * 293.57582 * 26 17 16 47 47 H 1.08994 * 109.71591 * 173.28494 * 26 17 16 48 48 H 1.09008 * 109.49090 * 301.33370 * 27 14 13 49 49 H 1.08997 * 109.49914 * 61.39734 * 27 14 13 50 50 H 1.09001 * 109.58644 * 66.43109 * 28 10 9 51 51 H 1.08998 * 109.58727 * 186.85740 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2175 0.0005 5 6 3.6458 1.1672 -0.0006 6 1 4.0100 0.6543 0.8896 7 6 4.1566 2.6098 -0.0045 8 6 5.6867 2.6112 0.0280 9 6 6.2209 1.9053 -1.2170 10 7 5.6200 0.5673 -1.3035 11 6 6.3964 -0.5278 -1.4224 12 8 5.8959 -1.6351 -1.3832 13 7 7.7279 -0.3955 -1.5850 14 6 8.5579 -1.5789 -1.8229 15 6 9.9906 -1.2974 -1.3641 16 6 10.8474 -2.5483 -1.5824 17 7 10.7344 -2.9633 -2.9873 18 6 11.8550 -3.1503 -3.7518 19 1 12.7164 -2.5141 -3.6121 20 6 11.8836 -4.1576 -4.7065 21 7 10.8093 -4.8851 -4.9282 22 14 13.4470 -4.4808 -5.6766 23 1 14.5045 -3.5335 -5.2412 24 1 13.9007 -5.8739 -5.4345 25 1 13.1787 -4.2923 -7.1250 26 6 9.3956 -3.1698 -3.5570 27 6 8.5550 -1.9119 -3.3167 28 6 4.1567 0.4454 -1.2515 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.9500 -0.8400 -0.0004 33 1 3.8122 3.1145 -0.9071 34 1 3.7745 3.1328 0.8722 35 1 6.0493 3.6388 0.0488 36 1 6.0321 2.0855 0.9182 37 1 7.3049 1.8152 -1.1474 38 1 5.9562 2.4827 -2.1028 39 1 8.1364 0.4834 -1.5444 40 1 8.1562 -2.4228 -1.2620 41 1 9.9891 -1.0375 -0.3056 42 1 10.4019 -0.4694 -1.9415 43 1 11.8884 -2.3232 -1.3505 44 1 10.4942 -3.3508 -0.9348 45 1 10.8293 -5.5887 -5.5955 46 1 8.9223 -4.0236 -3.0723 47 1 9.4765 -3.3561 -4.6279 48 1 7.5317 -2.0893 -3.6478 49 1 8.9790 -1.0780 -3.8761 50 1 3.7203 0.9014 -2.1402 51 1 3.8792 -0.6076 -1.2047 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609640053.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:39 Heat of formation + Delta-G solvation = -69.100277 kcal Electronic energy + Delta-G solvation = -30318.913392 eV Core-core repulsion = 26252.558950 eV Total energy + Delta-G solvation = -4066.354442 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.78287 -40.79986 -39.25508 -38.05172 -36.03901 -35.67957 -34.37222 -33.46224 -32.45082 -31.63667 -30.99471 -27.93958 -27.18275 -26.02477 -24.82865 -23.84368 -23.53702 -22.39999 -21.26766 -21.12799 -20.41201 -19.34921 -18.64592 -18.06051 -17.52898 -17.02087 -16.82501 -16.63263 -16.22348 -15.87047 -15.44235 -15.27636 -15.27222 -15.21903 -15.00344 -14.75533 -14.53768 -14.33318 -14.02086 -13.87229 -13.85198 -13.53198 -13.20647 -13.10929 -12.81470 -12.75752 -12.57219 -12.52931 -12.11960 -12.02330 -11.95368 -11.89045 -11.81032 -11.64959 -11.53675 -11.36619 -11.18569 -10.92503 -10.55256 -10.18108 -10.10780 -9.51751 -8.56017 -7.84585 -5.41893 1.40036 1.48067 1.49680 1.60016 1.67126 2.13654 2.26515 2.51338 2.91612 3.32010 3.59449 3.67109 3.72459 3.79710 3.91024 4.03027 4.10910 4.15069 4.22679 4.37963 4.45631 4.48718 4.52728 4.53257 4.60528 4.72232 4.72837 4.76543 4.84763 4.87706 4.92262 4.93004 5.03543 5.10466 5.12100 5.14678 5.17815 5.35072 5.36904 5.42077 5.48717 5.54265 5.63818 5.66789 5.81191 5.94046 6.44557 6.47628 6.98594 7.15329 7.18952 7.57961 7.86016 8.41415 9.20047 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.024666 B = 0.002171 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.900114 B =12893.295342 C =13558.410356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.728 5.728 3 C 0.519 3.481 4 O -0.575 6.575 5 C -0.113 4.113 6 H 0.108 0.892 7 C -0.096 4.096 8 C -0.126 4.126 9 C 0.103 3.897 10 N -0.625 5.625 11 C 0.703 3.297 12 O -0.632 6.632 13 N -0.725 5.725 14 C 0.180 3.820 15 C -0.121 4.121 16 C 0.142 3.858 17 N -0.612 5.612 18 C -0.261 4.261 19 H 0.072 0.928 20 C -0.050 4.050 21 N -0.937 5.937 22 Si 0.970 3.030 23 H -0.262 1.262 24 H -0.293 1.293 25 H -0.292 1.292 26 C 0.179 3.821 27 C -0.130 4.130 28 C 0.143 3.857 29 H 0.105 0.895 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.415 0.585 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.104 0.896 36 H 0.069 0.931 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.408 0.592 40 H 0.057 0.943 41 H 0.091 0.909 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.013 0.987 45 H 0.249 0.751 46 H -0.014 1.014 47 H 0.065 0.935 48 H 0.041 0.959 49 H 0.057 0.943 50 H 0.072 0.928 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.528 16.617 12.082 25.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.379 5.379 3 C 0.306 3.694 4 O -0.455 6.455 5 C -0.136 4.136 6 H 0.126 0.874 7 C -0.134 4.134 8 C -0.164 4.164 9 C -0.019 4.019 10 N -0.362 5.362 11 C 0.405 3.595 12 O -0.513 6.513 13 N -0.382 5.382 14 C 0.075 3.925 15 C -0.161 4.161 16 C 0.016 3.984 17 N -0.336 5.336 18 C -0.391 4.391 19 H 0.089 0.911 20 C -0.245 4.245 21 N -0.583 5.583 22 Si 0.798 3.202 23 H -0.186 1.186 24 H -0.220 1.220 25 H -0.219 1.219 26 C 0.053 3.947 27 C -0.171 4.171 28 C 0.019 3.981 29 H 0.123 0.877 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.251 0.749 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.122 0.878 36 H 0.088 0.912 37 H 0.112 0.888 38 H 0.100 0.900 39 H 0.246 0.754 40 H 0.075 0.925 41 H 0.109 0.891 42 H 0.092 0.908 43 H 0.086 0.914 44 H 0.031 0.969 45 H 0.059 0.941 46 H 0.004 0.996 47 H 0.083 0.917 48 H 0.059 0.941 49 H 0.076 0.924 50 H 0.091 0.909 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.326 16.437 11.991 25.473 hybrid contribution 0.733 -0.854 -0.781 1.370 sum -14.593 15.583 11.211 24.113 Atomic orbital electron populations 1.21678 0.78727 1.04104 1.01619 1.45936 1.08648 1.08904 1.74427 1.20745 0.90234 0.83539 0.74926 1.90687 1.71037 1.32611 1.51134 1.21692 0.90559 1.00391 1.00919 0.87360 1.21304 0.95666 0.93057 1.03356 1.21839 0.94485 1.02416 0.97628 1.21866 0.98643 0.81711 0.99723 1.47218 1.05903 1.05740 1.77308 1.16028 0.81996 0.84051 0.77426 1.90884 1.74090 1.25969 1.60354 1.45306 1.05048 1.11080 1.76765 1.20523 0.90383 0.86853 0.94776 1.22138 0.92745 0.99376 1.01814 1.21046 0.98601 0.93791 0.84918 1.44283 1.01886 1.80379 1.07053 1.19546 0.94150 1.10102 1.15312 0.91051 1.26142 0.99895 0.96258 1.02219 1.70120 1.28702 1.23346 1.36127 0.85162 0.79947 0.77510 0.77576 1.18554 1.22014 1.21944 1.20600 0.83723 0.91403 0.98988 1.22348 0.98464 0.99614 0.96652 1.21286 0.78830 1.01636 0.96386 0.87680 0.92768 0.92958 0.74947 0.91495 0.91123 0.87768 0.91236 0.88782 0.89953 0.75350 0.92500 0.89106 0.90812 0.91369 0.96933 0.94130 0.99571 0.91714 0.94066 0.92431 0.90942 0.89458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.96 10.70 127.77 1.37 2.33 16 2 N -0.73 -10.24 5.62 -484.54 -2.72 -12.96 16 3 C 0.52 9.71 7.16 87.66 0.63 10.34 16 4 O -0.58 -14.88 15.98 -3.05 -0.05 -14.93 16 5 C -0.11 -1.76 2.68 -11.46 -0.03 -1.79 16 6 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 7 C -0.10 -1.33 4.46 30.62 0.14 -1.19 16 8 C -0.13 -1.26 6.07 30.53 0.19 -1.08 16 9 C 0.10 1.28 6.35 86.22 0.55 1.83 16 10 N -0.62 -12.47 2.98 -837.76 -2.49 -14.96 16 11 C 0.70 19.99 8.26 179.05 1.48 21.47 16 12 O -0.63 -23.75 15.39 -3.97 -0.06 -23.81 16 13 N -0.73 -18.75 4.99 -457.69 -2.28 -21.03 16 14 C 0.18 6.03 2.46 45.02 0.11 6.14 16 15 C -0.12 -3.63 5.55 30.67 0.17 -3.46 16 16 C 0.14 5.62 6.51 86.36 0.56 6.18 16 17 N -0.61 -30.57 3.00 -699.03 -2.10 -32.67 16 18 C -0.26 -14.10 9.55 84.03 0.80 -13.30 16 19 H 0.07 3.68 7.83 -2.91 -0.02 3.66 16 20 C -0.05 -2.79 5.31 84.86 0.45 -2.34 16 21 N -0.94 -56.00 10.66 21.65 0.23 -55.77 16 22 Si 0.97 44.47 29.56 68.60 2.03 46.49 16 23 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 24 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 25 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 26 C 0.18 9.07 5.25 86.36 0.45 9.52 16 27 C -0.13 -5.25 5.65 30.67 0.17 -5.07 16 28 C 0.14 2.61 5.58 86.36 0.48 3.10 16 29 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.41 4.40 8.37 -92.71 -0.78 3.62 16 33 H 0.07 1.03 8.13 -2.39 -0.02 1.01 16 34 H 0.07 1.05 8.07 -2.38 -0.02 1.03 16 35 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.09 0.93 5.66 -2.39 -0.01 0.92 16 38 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 39 H 0.41 7.62 6.10 -92.71 -0.57 7.06 16 40 H 0.06 2.24 7.51 -2.39 -0.02 2.22 16 41 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.07 2.53 7.93 -2.39 -0.02 2.51 16 44 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 45 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 46 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 47 H 0.06 3.72 5.97 -2.39 -0.01 3.71 16 48 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 49 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 50 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 51 H 0.09 1.82 6.59 -2.39 -0.02 1.80 16 Total: -1.00 -76.56 395.50 -0.34 -76.90 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: -0.41 Total: 20.05 kcal Atomic # 6 Polarization: 25.17 SS G_CDS: 7.52 Total: 32.69 kcal Atomic # 7 Polarization: -128.03 SS G_CDS: -9.37 Total: -137.39 kcal Atomic # 8 Polarization: -38.63 SS G_CDS: -0.11 Total: -38.74 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Total: -76.56 -0.34 -76.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609640053.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.801 kcal (2) G-P(sol) polarization free energy of solvation -76.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds