Wall clock time and date at job start Tue Mar 31 2020 20:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34779 * 120.00035 * 2 1 4 4 O 1.21289 * 119.99464 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00292 * 179.97438 * 3 2 1 6 6 H 1.08993 * 110.05757 * 329.61783 * 5 3 2 7 7 C 1.54264 * 110.03352 * 208.19667 * 5 3 2 8 8 C 1.54883 * 104.19834 * 217.10768 * 7 5 3 9 9 C 1.54885 * 102.74874 * 37.94562 * 8 7 5 10 10 C 1.53884 * 110.02905 * 91.03608 * 5 3 2 11 11 H 1.08997 * 110.06908 * 238.59409 * 10 5 3 12 12 N 1.46497 * 110.03174 * 359.97438 * 10 5 3 13 13 C 1.34777 * 119.99948 * 208.76968 * 12 10 5 14 14 O 1.21582 * 120.00248 * 0.02562 * 13 12 10 15 15 N 1.34778 * 119.99889 * 180.02562 * 13 12 10 16 16 C 1.46498 * 120.00191 * 180.02562 * 15 13 12 17 17 C 1.53041 * 109.46502 * 154.99827 * 16 15 13 18 18 C 1.53190 * 109.31370 * 181.38681 * 17 16 15 19 19 N 1.46920 * 108.77400 * 305.36382 * 18 17 16 20 20 C 1.36941 * 120.63135 * 233.58291 * 19 18 17 21 21 H 1.07998 * 119.99827 * 147.60059 * 20 19 18 22 22 C 1.38810 * 119.99909 * 327.60306 * 20 19 18 23 23 N 1.31616 * 119.99836 * 335.69302 * 22 20 19 24 24 Si 1.86805 * 119.99728 * 155.69897 * 22 20 19 25 25 H 1.48495 * 109.47128 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.46703 * 239.99534 * 24 22 20 27 27 H 1.48501 * 109.47055 * 119.99639 * 24 22 20 28 28 C 1.46931 * 118.73801 * 53.86561 * 19 18 17 29 29 C 1.53045 * 109.45976 * 275.07006 * 16 15 13 30 30 H 1.09001 * 109.47062 * 60.00198 * 1 2 3 31 31 H 1.09004 * 109.47276 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47692 * 300.00030 * 1 2 3 33 33 H 0.96996 * 120.00039 * 179.97438 * 2 1 3 34 34 H 1.09007 * 110.48345 * 98.42811 * 7 5 3 35 35 H 1.08997 * 110.49090 * 335.79193 * 7 5 3 36 36 H 1.09005 * 110.75759 * 279.62939 * 8 7 5 37 37 H 1.09002 * 110.76154 * 156.26113 * 8 7 5 38 38 H 1.09006 * 110.48834 * 203.37819 * 9 8 7 39 39 H 1.08996 * 110.48731 * 80.73486 * 9 8 7 40 40 H 0.96999 * 119.99934 * 28.77599 * 12 10 5 41 41 H 0.97004 * 120.00228 * 359.97438 * 15 13 12 42 42 H 1.09002 * 109.45831 * 35.02395 * 16 15 13 43 43 H 1.09002 * 109.49278 * 61.43553 * 17 16 15 44 44 H 1.08996 * 109.52255 * 301.35797 * 17 16 15 45 45 H 1.08997 * 109.58575 * 185.58104 * 18 17 16 46 46 H 1.08994 * 109.70328 * 65.22668 * 18 17 16 47 47 H 0.96993 * 120.00551 * 354.21176 * 23 22 20 48 48 H 1.08997 * 109.58635 * 65.92768 * 28 19 18 49 49 H 1.09004 * 109.58330 * 186.35058 * 28 19 18 50 50 H 1.08992 * 109.49674 * 298.56288 * 29 16 15 51 51 H 1.08995 * 109.49666 * 58.62958 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5323 2.2176 -0.0005 5 6 3.6458 1.1673 0.0006 6 1 4.0195 0.2842 0.5187 7 6 4.1739 2.4448 0.6853 8 6 5.4294 2.8257 -0.1379 9 6 5.0037 2.4854 -1.5877 10 6 4.1734 1.1931 -1.4448 11 1 4.8029 0.3225 -1.6288 12 7 3.0525 1.2093 -2.3879 13 6 3.1960 0.6692 -3.6144 14 8 4.2555 0.1682 -3.9379 15 7 2.1650 0.6846 -4.4823 16 6 2.3206 0.0971 -5.8152 17 6 0.9502 -0.3258 -6.3494 18 6 1.1210 -0.9710 -7.7282 19 7 1.8468 -0.0377 -8.6004 20 6 1.3333 0.3223 -9.8178 21 1 1.5216 1.3098 -10.2125 22 6 0.5708 -0.5819 -10.5443 23 7 0.7180 -1.8748 -10.3469 24 14 -0.6640 0.0365 -11.8023 25 1 -0.6378 1.5209 -11.8334 26 1 -2.0247 -0.4266 -11.4292 27 1 -0.3113 -0.4934 -13.1440 28 6 3.1371 0.4971 -8.1444 29 6 2.9411 1.1303 -6.7585 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.9499 -0.8400 0.0004 34 1 4.4448 2.2384 1.7208 35 1 3.4298 3.2396 0.6360 36 1 6.2867 2.2241 0.1643 37 1 5.6483 3.8889 -0.0391 38 1 5.8802 2.3086 -2.2111 39 1 4.3935 3.2867 -2.0042 40 1 2.2072 1.6088 -2.1297 41 1 1.3195 1.0840 -4.2241 42 1 2.9714 -0.7752 -5.7538 43 1 0.3070 0.5501 -6.4346 44 1 0.4983 -1.0438 -5.6651 45 1 0.1413 -1.1839 -8.1559 46 1 1.6871 -1.8975 -7.6329 47 1 1.4160 -2.1990 -9.7566 48 1 3.8656 -0.3111 -8.0803 49 1 3.4880 1.2533 -8.8467 50 1 2.2792 1.9923 -6.8399 51 1 3.9064 1.4486 -6.3650 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611222528.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:30 Heat of formation + Delta-G solvation = -58.494841 kcal Electronic energy + Delta-G solvation = -30698.694375 eV Core-core repulsion = 26632.799819 eV Total energy + Delta-G solvation = -4065.894556 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.08048 -39.68791 -37.96084 -37.19345 -35.00028 -34.50955 -33.76625 -32.05466 -30.25952 -30.11979 -29.27436 -27.70604 -26.73175 -24.72898 -22.41462 -22.31533 -22.00535 -21.10967 -20.72394 -20.05653 -19.52495 -18.36867 -17.87039 -17.32224 -16.51794 -15.95884 -15.77724 -15.34299 -15.21946 -14.88491 -14.45597 -14.21802 -14.09838 -13.99134 -13.74196 -13.51013 -13.33485 -13.19273 -12.93611 -12.68549 -12.54233 -12.42792 -11.88972 -11.81180 -11.60008 -11.40555 -11.28853 -11.08756 -10.96363 -10.85506 -10.69419 -10.37073 -10.31241 -10.25867 -10.07834 -10.01021 -9.85339 -9.55674 -9.29024 -9.22868 -8.63775 -8.34393 -6.85372 -6.05442 -3.27470 2.16117 2.69648 2.82873 3.29553 3.51020 3.53403 3.67519 4.07305 4.14126 4.25095 4.38165 4.59596 4.75533 4.90594 4.95959 5.02588 5.08803 5.12343 5.17310 5.22907 5.31071 5.31825 5.41640 5.47837 5.52207 5.54683 5.66766 5.77442 5.80313 5.88640 5.93936 5.96987 6.04840 6.18501 6.25445 6.32956 6.40430 6.46147 6.52424 6.75223 6.83496 6.84659 6.98595 7.01956 7.02631 7.17712 7.76662 8.06889 8.08551 8.59838 8.70235 9.13357 9.84809 10.31832 11.21396 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.019441 B = 0.002460 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.887598 B =11380.939137 C =12191.444941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.731 5.731 3 C 0.521 3.479 4 O -0.538 6.538 5 C -0.124 4.124 6 H 0.101 0.899 7 C -0.112 4.112 8 C -0.122 4.122 9 C -0.135 4.135 10 C 0.175 3.825 11 H 0.103 0.897 12 N -0.749 5.749 13 C 0.704 3.296 14 O -0.590 6.590 15 N -0.739 5.739 16 C 0.171 3.829 17 C -0.141 4.141 18 C 0.158 3.842 19 N -0.599 5.599 20 C -0.351 4.351 21 H 0.054 0.946 22 C -0.022 4.022 23 N -0.915 5.915 24 Si 1.069 2.931 25 H -0.292 1.292 26 H -0.290 1.290 27 H -0.293 1.293 28 C 0.149 3.851 29 C -0.139 4.139 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.404 0.596 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.395 0.605 41 H 0.391 0.609 42 H 0.081 0.919 43 H 0.062 0.938 44 H 0.055 0.945 45 H 0.078 0.922 46 H 0.020 0.980 47 H 0.269 0.731 48 H 0.019 0.981 49 H 0.057 0.943 50 H 0.057 0.943 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.962 4.818 26.015 26.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.382 5.382 3 C 0.308 3.692 4 O -0.415 6.415 5 C -0.146 4.146 6 H 0.119 0.881 7 C -0.150 4.150 8 C -0.160 4.160 9 C -0.174 4.174 10 C 0.068 3.932 11 H 0.121 0.879 12 N -0.408 5.408 13 C 0.404 3.596 14 O -0.468 6.468 15 N -0.392 5.392 16 C 0.067 3.933 17 C -0.181 4.181 18 C 0.031 3.969 19 N -0.323 5.323 20 C -0.480 4.480 21 H 0.072 0.928 22 C -0.225 4.225 23 N -0.554 5.554 24 Si 0.899 3.101 25 H -0.218 1.218 26 H -0.217 1.217 27 H -0.221 1.221 28 C 0.022 3.978 29 C -0.180 4.180 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.237 0.763 34 H 0.090 0.910 35 H 0.106 0.894 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.231 0.769 41 H 0.223 0.777 42 H 0.099 0.901 43 H 0.081 0.919 44 H 0.073 0.927 45 H 0.096 0.904 46 H 0.038 0.962 47 H 0.080 0.920 48 H 0.037 0.963 49 H 0.076 0.924 50 H 0.076 0.924 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.275 4.625 24.594 25.238 hybrid contribution 0.562 0.404 1.370 1.535 sum 3.836 5.030 25.964 26.724 Atomic orbital electron populations 1.21579 0.79376 1.02555 1.02413 1.45891 1.07973 1.08829 1.75505 1.20459 0.89952 0.83695 0.75126 1.90729 1.70170 1.31140 1.49422 1.22368 0.91977 1.02129 0.98145 0.88078 1.22388 0.98148 0.95958 0.98545 1.22460 0.97214 1.01740 0.94559 1.22835 1.00224 0.97210 0.97153 1.21337 0.87251 1.00141 0.84447 0.87857 1.45508 1.16221 1.64811 1.14262 1.15997 0.84429 0.78983 0.80206 1.90911 1.26749 1.51623 1.77501 1.45521 1.14105 1.64096 1.15462 1.20855 0.97865 0.95936 0.78679 1.22408 0.95130 1.00985 0.99560 1.20853 0.97769 0.91122 0.87147 1.44152 1.17415 1.53710 1.16991 1.19982 1.34222 0.97763 0.96015 0.92842 1.25931 1.02583 0.94086 0.99878 1.70712 1.34630 1.13095 1.36995 0.83475 0.76385 0.74479 0.75730 1.21806 1.21677 1.22060 1.20982 0.88428 0.96123 0.92227 1.22455 0.99842 0.98437 0.97242 0.92046 0.90478 0.92114 0.76262 0.91026 0.89363 0.91039 0.90852 0.90505 0.90802 0.76859 0.77668 0.90107 0.91888 0.92663 0.90365 0.96229 0.91971 0.96310 0.92434 0.92393 0.92602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.53 10.70 59.84 0.64 1.17 16 2 N -0.73 -4.98 5.71 -67.08 -0.38 -5.36 16 3 C 0.52 4.67 4.86 -10.99 -0.05 4.62 16 4 O -0.54 -6.59 15.10 5.55 0.08 -6.51 16 5 C -0.12 -0.91 3.29 -90.65 -0.30 -1.21 16 6 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 7 C -0.11 -0.80 6.31 -25.08 -0.16 -0.96 16 8 C -0.12 -0.83 6.91 -24.74 -0.17 -1.00 16 9 C -0.14 -1.26 6.53 -25.08 -0.16 -1.43 16 10 C 0.17 1.68 3.29 -66.81 -0.22 1.46 16 11 H 0.10 1.09 7.45 -51.93 -0.39 0.70 16 12 N -0.75 -8.56 4.56 -57.58 -0.26 -8.82 16 13 C 0.70 10.54 8.53 -86.92 -0.74 9.80 16 14 O -0.59 -11.00 15.60 5.29 0.08 -10.91 16 15 N -0.74 -10.73 5.08 -58.63 -0.30 -11.02 16 16 C 0.17 3.00 2.41 -67.89 -0.16 2.84 16 17 C -0.14 -2.55 5.55 -26.61 -0.15 -2.70 16 18 C 0.16 3.63 4.76 -3.72 -0.02 3.61 16 19 N -0.60 -15.07 2.78 -172.06 -0.48 -15.55 16 20 C -0.35 -9.82 9.44 -15.06 -0.14 -9.96 16 21 H 0.05 1.52 7.94 -52.49 -0.42 1.10 16 22 C -0.02 -0.63 4.67 -17.43 -0.08 -0.71 16 23 N -0.91 -27.35 12.59 55.49 0.70 -26.65 16 24 Si 1.07 25.27 29.98 -169.99 -5.10 20.17 16 25 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 27 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 28 C 0.15 3.30 6.54 -3.48 -0.02 3.27 16 29 C -0.14 -2.64 5.67 -26.39 -0.15 -2.79 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.40 1.96 8.83 -40.82 -0.36 1.60 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.09 0.80 6.85 -51.93 -0.36 0.44 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.07 0.78 8.05 -51.93 -0.42 0.36 16 40 H 0.40 4.39 6.35 -40.82 -0.26 4.13 16 41 H 0.39 4.83 8.62 -40.82 -0.35 4.47 16 42 H 0.08 1.59 7.58 -51.93 -0.39 1.20 16 43 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 45 H 0.08 1.99 6.63 -51.93 -0.34 1.65 16 46 H 0.02 0.47 7.86 -51.93 -0.41 0.06 16 47 H 0.27 8.15 6.88 -40.82 -0.28 7.86 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 49 H 0.06 1.27 7.93 -51.93 -0.41 0.86 16 50 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 51 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 398.99 15.07 6.01 6.01 Total: -1.00 -34.18 398.99 -10.21 -44.39 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -8.68 Total: 8.24 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: -1.89 Total: 6.02 kcal Atomic # 7 Polarization: -66.68 SS G_CDS: -0.72 Total: -67.40 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: 0.17 Total: -17.43 kcal Atomic # 14 Polarization: 25.27 SS G_CDS: -5.10 Total: 20.17 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.18 -10.21 -44.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611222528.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.108 kcal (2) G-P(sol) polarization free energy of solvation -34.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds