Wall clock time and date at job start Tue Mar 31 2020 20:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34779 * 120.00035 * 2 1 4 4 O 1.21289 * 119.99464 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00292 * 179.97438 * 3 2 1 6 6 H 1.08993 * 110.05757 * 329.61783 * 5 3 2 7 7 C 1.54264 * 110.03352 * 208.19667 * 5 3 2 8 8 C 1.54883 * 104.19834 * 217.10768 * 7 5 3 9 9 C 1.54885 * 102.74874 * 37.94562 * 8 7 5 10 10 C 1.53884 * 110.02905 * 91.03608 * 5 3 2 11 11 H 1.08997 * 110.06908 * 238.59409 * 10 5 3 12 12 N 1.46497 * 110.03174 * 359.97438 * 10 5 3 13 13 C 1.34777 * 119.99948 * 208.76968 * 12 10 5 14 14 O 1.21582 * 120.00248 * 0.02562 * 13 12 10 15 15 N 1.34778 * 119.99889 * 180.02562 * 13 12 10 16 16 C 1.46498 * 120.00191 * 180.02562 * 15 13 12 17 17 C 1.53041 * 109.46502 * 154.99827 * 16 15 13 18 18 C 1.53190 * 109.31370 * 181.38681 * 17 16 15 19 19 N 1.46920 * 108.77400 * 305.36382 * 18 17 16 20 20 C 1.36941 * 120.63135 * 233.58291 * 19 18 17 21 21 H 1.07998 * 119.99827 * 147.60059 * 20 19 18 22 22 C 1.38810 * 119.99909 * 327.60306 * 20 19 18 23 23 N 1.31616 * 119.99836 * 335.69302 * 22 20 19 24 24 Si 1.86805 * 119.99728 * 155.69897 * 22 20 19 25 25 H 1.48495 * 109.47128 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.46703 * 239.99534 * 24 22 20 27 27 H 1.48501 * 109.47055 * 119.99639 * 24 22 20 28 28 C 1.46931 * 118.73801 * 53.86561 * 19 18 17 29 29 C 1.53045 * 109.45976 * 275.07006 * 16 15 13 30 30 H 1.09001 * 109.47062 * 60.00198 * 1 2 3 31 31 H 1.09004 * 109.47276 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47692 * 300.00030 * 1 2 3 33 33 H 0.96996 * 120.00039 * 179.97438 * 2 1 3 34 34 H 1.09007 * 110.48345 * 98.42811 * 7 5 3 35 35 H 1.08997 * 110.49090 * 335.79193 * 7 5 3 36 36 H 1.09005 * 110.75759 * 279.62939 * 8 7 5 37 37 H 1.09002 * 110.76154 * 156.26113 * 8 7 5 38 38 H 1.09006 * 110.48834 * 203.37819 * 9 8 7 39 39 H 1.08996 * 110.48731 * 80.73486 * 9 8 7 40 40 H 0.96999 * 119.99934 * 28.77599 * 12 10 5 41 41 H 0.97004 * 120.00228 * 359.97438 * 15 13 12 42 42 H 1.09002 * 109.45831 * 35.02395 * 16 15 13 43 43 H 1.09002 * 109.49278 * 61.43553 * 17 16 15 44 44 H 1.08996 * 109.52255 * 301.35797 * 17 16 15 45 45 H 1.08997 * 109.58575 * 185.58104 * 18 17 16 46 46 H 1.08994 * 109.70328 * 65.22668 * 18 17 16 47 47 H 0.96993 * 120.00551 * 354.21176 * 23 22 20 48 48 H 1.08997 * 109.58635 * 65.92768 * 28 19 18 49 49 H 1.09004 * 109.58330 * 186.35058 * 28 19 18 50 50 H 1.08992 * 109.49674 * 298.56288 * 29 16 15 51 51 H 1.08995 * 109.49666 * 58.62958 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5323 2.2176 -0.0005 5 6 3.6458 1.1673 0.0006 6 1 4.0195 0.2842 0.5187 7 6 4.1739 2.4448 0.6853 8 6 5.4294 2.8257 -0.1379 9 6 5.0037 2.4854 -1.5877 10 6 4.1734 1.1931 -1.4448 11 1 4.8029 0.3225 -1.6288 12 7 3.0525 1.2093 -2.3879 13 6 3.1960 0.6692 -3.6144 14 8 4.2555 0.1682 -3.9379 15 7 2.1650 0.6846 -4.4823 16 6 2.3206 0.0971 -5.8152 17 6 0.9502 -0.3258 -6.3494 18 6 1.1210 -0.9710 -7.7282 19 7 1.8468 -0.0377 -8.6004 20 6 1.3333 0.3223 -9.8178 21 1 1.5216 1.3098 -10.2125 22 6 0.5708 -0.5819 -10.5443 23 7 0.7180 -1.8748 -10.3469 24 14 -0.6640 0.0365 -11.8023 25 1 -0.6378 1.5209 -11.8334 26 1 -2.0247 -0.4266 -11.4292 27 1 -0.3113 -0.4934 -13.1440 28 6 3.1371 0.4971 -8.1444 29 6 2.9411 1.1303 -6.7585 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.9499 -0.8400 0.0004 34 1 4.4448 2.2384 1.7208 35 1 3.4298 3.2396 0.6360 36 1 6.2867 2.2241 0.1643 37 1 5.6483 3.8889 -0.0391 38 1 5.8802 2.3086 -2.2111 39 1 4.3935 3.2867 -2.0042 40 1 2.2072 1.6088 -2.1297 41 1 1.3195 1.0840 -4.2241 42 1 2.9714 -0.7752 -5.7538 43 1 0.3070 0.5501 -6.4346 44 1 0.4983 -1.0438 -5.6651 45 1 0.1413 -1.1839 -8.1559 46 1 1.6871 -1.8975 -7.6329 47 1 1.4160 -2.1990 -9.7566 48 1 3.8656 -0.3111 -8.0803 49 1 3.4880 1.2533 -8.8467 50 1 2.2792 1.9923 -6.8399 51 1 3.9064 1.4486 -6.3650 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611222528.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:29 Heat of formation + Delta-G solvation = -83.166624 kcal Electronic energy + Delta-G solvation = -30699.764223 eV Core-core repulsion = 26632.799819 eV Total energy + Delta-G solvation = -4066.964404 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.92274 -40.81458 -39.32606 -38.23152 -36.15692 -35.65199 -34.84101 -33.78873 -31.92707 -31.03838 -30.73251 -28.58386 -27.35264 -26.59871 -24.09089 -23.87990 -22.78994 -22.15310 -21.62865 -21.16564 -20.74402 -19.72962 -19.22453 -18.60608 -17.37287 -16.95892 -16.60379 -16.44067 -16.15702 -16.07567 -15.96097 -15.60262 -15.40602 -15.30890 -15.12358 -14.81514 -14.64374 -14.48809 -14.15034 -13.86460 -13.43281 -13.37974 -13.12288 -12.88162 -12.66799 -12.57544 -12.51730 -12.49324 -12.12002 -12.03515 -11.98358 -11.92304 -11.86648 -11.60528 -11.55359 -11.43089 -11.22060 -10.93133 -10.48996 -10.36794 -10.16707 -9.84646 -8.95490 -8.25060 -5.47499 1.45011 1.59511 1.61971 1.67317 1.83888 2.09304 2.23926 2.64590 3.12654 3.21004 3.47646 3.48757 3.51894 3.75446 3.77232 3.94823 4.17592 4.21314 4.30067 4.35153 4.39694 4.43083 4.43958 4.47542 4.48024 4.60771 4.61843 4.69560 4.71308 4.86031 4.93138 4.95113 4.98574 5.02254 5.03459 5.11489 5.14464 5.16343 5.18770 5.34158 5.37581 5.46447 5.48007 5.52189 5.86270 5.89442 6.38365 6.46743 6.96254 7.04567 7.15788 7.51933 7.74494 8.20752 8.97463 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.019441 B = 0.002460 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.887598 B =11380.939137 C =12191.444941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.721 5.721 3 C 0.517 3.483 4 O -0.575 6.575 5 C -0.116 4.116 6 H 0.133 0.867 7 C -0.109 4.109 8 C -0.113 4.113 9 C -0.138 4.138 10 C 0.170 3.830 11 H 0.098 0.902 12 N -0.734 5.734 13 C 0.704 3.296 14 O -0.626 6.626 15 N -0.729 5.729 16 C 0.184 3.816 17 C -0.123 4.123 18 C 0.162 3.838 19 N -0.615 5.615 20 C -0.358 4.358 21 H 0.046 0.954 22 C -0.071 4.071 23 N -0.939 5.939 24 Si 1.120 2.880 25 H -0.275 1.275 26 H -0.283 1.283 27 H -0.291 1.291 28 C 0.147 3.853 29 C -0.124 4.124 30 H 0.049 0.951 31 H 0.102 0.898 32 H 0.055 0.945 33 H 0.415 0.585 34 H 0.093 0.907 35 H 0.066 0.934 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.057 0.943 40 H 0.399 0.601 41 H 0.405 0.595 42 H 0.062 0.938 43 H 0.068 0.932 44 H 0.083 0.917 45 H 0.050 0.950 46 H 0.005 0.995 47 H 0.254 0.746 48 H 0.010 0.990 49 H 0.051 0.949 50 H 0.060 0.940 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.559 5.264 28.114 28.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.372 5.372 3 C 0.304 3.696 4 O -0.454 6.454 5 C -0.138 4.138 6 H 0.151 0.849 7 C -0.147 4.147 8 C -0.151 4.151 9 C -0.177 4.177 10 C 0.064 3.936 11 H 0.116 0.884 12 N -0.391 5.391 13 C 0.404 3.596 14 O -0.507 6.507 15 N -0.383 5.383 16 C 0.079 3.921 17 C -0.163 4.163 18 C 0.036 3.964 19 N -0.340 5.340 20 C -0.488 4.488 21 H 0.064 0.936 22 C -0.268 4.268 23 N -0.580 5.580 24 Si 0.944 3.056 25 H -0.200 1.200 26 H -0.210 1.210 27 H -0.218 1.218 28 C 0.021 3.979 29 C -0.164 4.164 30 H 0.068 0.932 31 H 0.121 0.879 32 H 0.074 0.926 33 H 0.251 0.749 34 H 0.112 0.888 35 H 0.085 0.915 36 H 0.107 0.893 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.236 0.764 41 H 0.240 0.760 42 H 0.080 0.920 43 H 0.087 0.913 44 H 0.101 0.899 45 H 0.069 0.931 46 H 0.023 0.977 47 H 0.064 0.936 48 H 0.028 0.972 49 H 0.070 0.930 50 H 0.079 0.921 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.870 5.077 26.762 27.391 hybrid contribution 0.759 0.259 0.755 1.101 sum 3.629 5.335 27.517 28.264 Atomic orbital electron populations 1.21668 0.78988 1.03988 1.01618 1.45887 1.08357 1.08827 1.74149 1.20733 0.90568 0.83631 0.74700 1.90720 1.70965 1.32511 1.51250 1.22387 0.90949 1.03782 0.96662 0.84901 1.22362 0.97481 0.95080 0.99802 1.22441 0.97699 1.02468 0.92445 1.22811 0.99494 0.96556 0.98803 1.21524 0.86728 1.00017 0.85317 0.88405 1.45423 1.16936 1.63547 1.13219 1.16078 0.83746 0.78810 0.80945 1.90895 1.28174 1.53285 1.78346 1.45165 1.14858 1.63997 1.14257 1.20449 0.96890 0.94916 0.79852 1.22156 0.95660 1.01459 0.96995 1.20734 0.95685 0.90731 0.89256 1.44383 1.18712 1.54050 1.16873 1.20205 1.34109 0.97367 0.97133 0.93592 1.27307 1.04177 0.93696 1.01578 1.70843 1.34951 1.14114 1.38056 0.82799 0.74338 0.74955 0.73476 1.19972 1.20963 1.21820 1.21039 0.87145 0.95727 0.93984 1.22249 1.00197 0.98481 0.95486 0.93208 0.87949 0.92585 0.74898 0.88796 0.91495 0.89271 0.90335 0.91602 0.92391 0.76357 0.75993 0.91981 0.91290 0.89884 0.93139 0.97677 0.93632 0.97154 0.92995 0.92131 0.92328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.87 10.70 127.77 1.37 2.24 16 2 N -0.72 -8.19 5.71 -484.52 -2.77 -10.96 16 3 C 0.52 8.32 4.86 87.66 0.43 8.74 16 4 O -0.57 -13.55 15.10 -3.06 -0.05 -13.59 16 5 C -0.12 -1.43 3.29 -10.81 -0.04 -1.46 16 6 H 0.13 0.82 8.14 -2.39 -0.02 0.80 16 7 C -0.11 -1.30 6.31 31.67 0.20 -1.10 16 8 C -0.11 -1.31 6.91 31.88 0.22 -1.09 16 9 C -0.14 -2.45 6.53 31.67 0.21 -2.24 16 10 C 0.17 3.01 3.29 45.72 0.15 3.16 16 11 H 0.10 1.91 7.45 -2.39 -0.02 1.89 16 12 N -0.73 -15.79 4.56 -454.35 -2.07 -17.86 16 13 C 0.70 20.26 8.53 179.05 1.53 21.79 16 14 O -0.63 -22.97 15.60 -3.98 -0.06 -23.03 16 15 N -0.73 -19.97 5.08 -457.68 -2.33 -22.30 16 16 C 0.18 6.31 2.41 45.02 0.11 6.42 16 17 C -0.12 -4.31 5.55 30.67 0.17 -4.14 16 18 C 0.16 7.56 4.76 86.36 0.41 7.97 16 19 N -0.62 -31.47 2.78 -698.28 -1.94 -33.41 16 20 C -0.36 -20.31 9.44 84.03 0.79 -19.51 16 21 H 0.05 2.63 7.94 -2.91 -0.02 2.61 16 22 C -0.07 -4.02 4.67 84.86 0.40 -3.62 16 23 N -0.94 -57.23 12.59 21.65 0.27 -56.96 16 24 Si 1.12 50.93 29.98 68.60 2.06 52.98 16 25 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 26 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 27 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 28 C 0.15 6.59 6.54 86.51 0.57 7.16 16 29 C -0.12 -4.63 5.67 30.82 0.17 -4.45 16 30 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.10 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.42 2.83 8.83 -92.71 -0.82 2.01 16 34 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 35 H 0.07 1.13 6.85 -2.39 -0.02 1.12 16 36 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 37 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 39 H 0.06 1.21 8.05 -2.39 -0.02 1.19 16 40 H 0.40 8.30 6.35 -92.71 -0.59 7.71 16 41 H 0.40 9.06 8.62 -92.71 -0.80 8.26 16 42 H 0.06 2.42 7.58 -2.39 -0.02 2.40 16 43 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 44 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 45 H 0.05 2.62 6.63 -2.39 -0.02 2.60 16 46 H 0.01 0.26 7.86 -2.39 -0.02 0.24 16 47 H 0.25 15.88 6.88 -92.71 -0.64 15.24 16 48 H 0.01 0.48 8.14 -2.39 -0.02 0.47 16 49 H 0.05 2.34 7.93 -2.38 -0.02 2.32 16 50 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 51 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -75.59 398.99 -1.32 -76.92 By element: Atomic # 1 Polarization: 29.48 SS G_CDS: -1.12 Total: 28.36 kcal Atomic # 6 Polarization: 13.17 SS G_CDS: 6.68 Total: 19.85 kcal Atomic # 7 Polarization: -132.65 SS G_CDS: -8.83 Total: -141.48 kcal Atomic # 8 Polarization: -36.52 SS G_CDS: -0.11 Total: -36.63 kcal Atomic # 14 Polarization: 50.93 SS G_CDS: 2.06 Total: 52.98 kcal Total: -75.59 -1.32 -76.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611222528.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.248 kcal (2) G-P(sol) polarization free energy of solvation -75.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds