Wall clock time and date at job start Tue Mar 31 2020 21:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34773 * 119.99817 * 2 1 4 4 O 1.21580 * 120.00202 * 0.02562 * 3 2 1 5 5 N 1.34776 * 119.99569 * 179.97438 * 3 2 1 6 6 C 1.46503 * 119.99958 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.47425 * 185.11742 * 6 5 3 8 8 H 1.09004 * 109.58765 * 47.06550 * 7 6 5 9 9 C 1.53191 * 109.58890 * 167.35136 * 7 6 5 10 10 C 1.53036 * 109.31275 * 174.56784 * 9 7 6 11 11 C 1.53042 * 109.53524 * 298.62645 * 10 9 7 12 12 C 1.53198 * 109.30967 * 61.37352 * 11 10 9 13 13 N 1.46928 * 109.58462 * 286.78319 * 7 6 5 14 14 C 1.34773 * 120.63178 * 6.45533 * 13 7 6 15 15 O 1.21594 * 119.99880 * 5.35915 * 14 13 7 16 16 N 1.34774 * 120.00164 * 185.35446 * 14 13 7 17 17 C 1.46499 * 119.99991 * 175.45906 * 16 14 13 18 18 C 1.53008 * 109.47153 * 184.87505 * 17 16 14 19 19 C 1.50699 * 115.54645 * 305.89635 * 18 17 16 20 20 H 1.08000 * 119.99852 * 144.18679 * 19 18 17 21 21 C 1.37876 * 120.00393 * 324.19637 * 19 18 17 22 22 N 1.31519 * 119.99636 * 3.28109 * 21 19 18 23 23 Si 1.86794 * 120.00128 * 183.28847 * 21 19 18 24 24 H 1.48496 * 109.47577 * 89.99627 * 23 21 19 25 25 H 1.48505 * 109.47217 * 209.99546 * 23 21 19 26 26 H 1.48503 * 109.47396 * 329.99313 * 23 21 19 27 27 C 1.52993 * 117.49956 * 160.22949 * 18 17 16 28 28 C 1.52994 * 117.49940 * 91.56443 * 18 17 16 29 29 H 1.08994 * 109.47301 * 59.99942 * 1 2 3 30 30 H 1.08998 * 109.47082 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47081 * 299.99743 * 1 2 3 32 32 H 0.97000 * 119.99560 * 179.97438 * 2 1 3 33 33 H 0.96997 * 120.00580 * 0.02562 * 5 3 2 34 34 H 1.08996 * 109.47559 * 65.10966 * 6 5 3 35 35 H 1.09006 * 109.46788 * 305.11594 * 6 5 3 36 36 H 1.09003 * 109.49476 * 294.51383 * 9 7 6 37 37 H 1.09000 * 109.49712 * 54.60841 * 9 7 6 38 38 H 1.08997 * 109.46417 * 58.65069 * 10 9 7 39 39 H 1.09004 * 109.45803 * 178.62888 * 10 9 7 40 40 H 1.09002 * 109.49789 * 181.31816 * 11 10 9 41 41 H 1.08994 * 109.49954 * 301.42126 * 11 10 9 42 42 H 1.08992 * 109.58791 * 65.14847 * 12 11 10 43 43 H 1.08997 * 109.58500 * 185.58151 * 12 11 10 44 44 H 0.96996 * 119.99930 * 355.45369 * 16 14 13 45 45 H 1.09000 * 109.47092 * 304.87040 * 17 16 14 46 46 H 1.08996 * 109.47818 * 64.87202 * 17 16 14 47 47 H 0.97002 * 119.99253 * 185.00491 * 22 21 19 48 48 H 1.08999 * 117.49988 * 359.97438 * 27 18 17 49 49 H 1.08994 * 117.50376 * 145.02403 * 27 18 17 50 50 H 1.09003 * 117.50343 * 214.98057 * 28 18 17 51 51 H 1.09007 * 117.50042 * 359.97438 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2201 0.0005 5 7 3.4866 1.1671 0.0005 6 6 4.2192 2.4359 0.0011 7 6 5.7185 2.1592 -0.1271 8 1 5.8902 1.4396 -0.9276 9 6 6.4564 3.4641 -0.4426 10 6 7.9650 3.2069 -0.4355 11 6 8.3966 2.7318 0.9539 12 6 7.6807 1.4185 1.2852 13 7 6.2295 1.6180 1.1398 14 6 5.3865 1.3143 2.1465 15 8 4.1849 1.3948 1.9785 16 7 5.8753 0.9212 3.3394 17 6 4.9648 0.6871 4.4629 18 6 5.7772 0.3714 5.7205 19 6 6.7660 -0.7582 5.5889 20 1 7.7134 -0.7094 6.1050 21 6 6.4614 -1.8539 4.8093 22 7 5.3360 -1.8846 4.1293 23 14 7.6467 -3.2947 4.7193 24 1 7.3179 -4.2738 5.7862 25 1 7.5287 -3.9506 3.3922 26 1 9.0361 -2.8053 4.9076 27 6 5.0837 0.5492 7.0726 28 6 6.1595 1.5429 6.6271 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.9500 -0.8401 0.0004 33 1 3.9717 0.3271 0.0005 34 1 4.0260 2.9666 0.9333 35 1 3.8892 3.0463 -0.8396 36 1 6.1535 3.8247 -1.4256 37 1 6.2112 4.2121 0.3114 38 1 8.2063 2.4409 -1.1724 39 1 8.4916 4.1284 -0.6837 40 1 9.4747 2.5712 0.9648 41 1 8.1332 3.4867 1.6946 42 1 8.0124 0.6386 0.6000 43 1 7.9075 1.1275 2.3109 44 1 6.8300 0.7933 3.4539 45 1 4.3622 1.5790 4.6341 46 1 4.3113 -0.1541 4.2319 47 1 5.0873 -2.6839 3.6392 48 1 4.0489 0.8916 7.0663 49 1 5.3430 -0.1504 7.8671 50 1 7.1262 1.4966 7.1288 51 1 5.8328 2.5388 6.3275 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875553506.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:40 Heat of formation + Delta-G solvation = -14.614019 kcal Electronic energy + Delta-G solvation = -32036.140778 eV Core-core repulsion = 27972.149037 eV Total energy + Delta-G solvation = -4063.991740 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.72099 -40.47321 -38.95081 -37.94616 -36.19413 -35.36510 -34.42619 -34.07808 -33.29619 -32.28907 -28.47480 -27.79634 -27.20219 -26.27091 -25.06450 -23.09571 -22.93339 -22.01742 -21.51531 -21.07320 -20.33448 -19.58739 -18.58769 -17.88804 -17.31313 -17.07259 -16.72421 -16.52892 -16.18388 -15.61402 -15.48172 -15.39437 -15.25321 -15.15586 -15.08173 -14.58010 -14.34964 -14.18725 -13.85117 -13.65577 -13.52053 -13.36273 -13.23049 -13.01502 -12.96468 -12.91590 -12.54808 -12.28432 -12.11253 -12.04684 -11.83057 -11.56467 -11.48440 -11.42928 -11.24645 -10.87024 -10.67946 -10.35408 -10.17984 -10.06767 -9.79730 -9.17310 -9.14435 -7.89774 -6.16114 1.43687 1.48904 1.55409 1.89282 1.99894 2.43150 2.44459 2.56554 3.01402 3.32599 3.52711 3.65052 3.77997 3.92835 4.04493 4.19344 4.25409 4.29175 4.33689 4.44138 4.54505 4.55416 4.65704 4.67606 4.71681 4.82011 4.83632 4.91857 4.93317 4.94117 5.02468 5.07444 5.11118 5.14308 5.24121 5.27755 5.30946 5.51730 5.52307 5.63272 5.64099 5.76547 5.85315 6.02501 6.07246 6.13501 6.24091 6.41959 6.84622 7.24520 7.41384 7.48383 7.78889 8.00542 8.95803 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.008631 B = 0.004752 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3243.477921 B = 5890.693331 C = 7293.550068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.748 5.748 3 C 0.698 3.302 4 O -0.654 6.654 5 N -0.689 5.689 6 C 0.162 3.838 7 C 0.159 3.841 8 H 0.090 0.910 9 C -0.123 4.123 10 C -0.109 4.109 11 C -0.129 4.129 12 C 0.109 3.891 13 N -0.630 5.630 14 C 0.685 3.315 15 O -0.609 6.609 16 N -0.701 5.701 17 C 0.205 3.795 18 C 0.012 3.988 19 C -0.504 4.504 20 H 0.056 0.944 21 C 0.040 3.960 22 N -0.881 5.881 23 Si 0.948 3.052 24 H -0.286 1.286 25 H -0.287 1.287 26 H -0.266 1.266 27 C -0.202 4.202 28 C -0.188 4.188 29 H 0.053 0.947 30 H 0.108 0.892 31 H 0.033 0.967 32 H 0.406 0.594 33 H 0.394 0.606 34 H 0.042 0.958 35 H 0.061 0.939 36 H 0.096 0.904 37 H 0.054 0.946 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.094 0.906 41 H 0.053 0.947 42 H 0.079 0.921 43 H 0.067 0.933 44 H 0.395 0.605 45 H -0.002 1.002 46 H 0.074 0.926 47 H 0.256 0.744 48 H 0.070 0.930 49 H 0.078 0.922 50 H 0.084 0.916 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.402 4.235 -12.477 14.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.404 5.404 3 C 0.398 3.602 4 O -0.538 6.538 5 N -0.341 5.341 6 C 0.038 3.962 7 C 0.055 3.945 8 H 0.108 0.892 9 C -0.162 4.162 10 C -0.146 4.146 11 C -0.167 4.167 12 C -0.013 4.013 13 N -0.370 5.370 14 C 0.386 3.614 15 O -0.489 6.489 16 N -0.354 5.354 17 C 0.080 3.920 18 C 0.012 3.988 19 C -0.541 4.541 20 H 0.074 0.926 21 C -0.162 4.162 22 N -0.518 5.518 23 Si 0.774 3.226 24 H -0.213 1.213 25 H -0.213 1.213 26 H -0.190 1.190 27 C -0.240 4.240 28 C -0.226 4.226 29 H 0.071 0.929 30 H 0.127 0.873 31 H 0.052 0.948 32 H 0.240 0.760 33 H 0.228 0.772 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.115 0.885 37 H 0.073 0.927 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.112 0.888 41 H 0.072 0.928 42 H 0.097 0.903 43 H 0.086 0.914 44 H 0.231 0.769 45 H 0.017 0.983 46 H 0.092 0.908 47 H 0.066 0.934 48 H 0.088 0.912 49 H 0.097 0.903 50 H 0.103 0.897 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.912 5.156 -12.745 14.295 hybrid contribution 0.920 -1.708 0.851 2.118 sum 4.832 3.448 -11.894 13.294 Atomic orbital electron populations 1.21422 0.77762 1.03544 1.00730 1.44833 1.08165 1.06895 1.80503 1.16121 0.82521 0.84078 0.77468 1.90786 1.69190 1.32277 1.61581 1.44666 1.03467 1.09429 1.76517 1.21088 0.89640 0.85610 0.99879 1.21368 0.91455 0.96759 0.84927 0.89245 1.21905 0.96341 0.95037 1.02880 1.21463 0.94050 1.02579 0.96538 1.21900 1.00890 0.95954 0.98003 1.21800 0.78837 0.98783 1.01902 1.47358 1.06739 1.68954 1.13921 1.16261 0.85267 0.78905 0.80928 1.91038 1.14361 1.61960 1.81575 1.44922 1.10678 1.70583 1.09234 1.20401 0.91016 0.96291 0.84254 1.19323 0.97330 0.94597 0.87598 1.20618 1.01808 1.02638 1.29058 0.92599 1.25540 0.96666 1.00078 0.93932 1.70102 1.23489 1.27535 1.30667 0.85723 0.80023 0.79986 0.76833 1.21259 1.21338 1.19034 1.22951 0.95723 1.03455 1.01906 1.22903 0.98760 0.93942 1.06947 0.92865 0.87314 0.94833 0.75981 0.77153 0.94013 0.92115 0.88539 0.92669 0.90373 0.89886 0.88753 0.92792 0.90318 0.91449 0.76854 0.98336 0.90827 0.93391 0.91186 0.90312 0.89730 0.90515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.81 10.70 127.77 1.37 4.18 16 2 N -0.75 -22.85 5.72 -500.21 -2.86 -25.71 16 3 C 0.70 26.89 8.27 179.06 1.48 28.37 16 4 O -0.65 -30.44 16.34 -3.97 -0.06 -30.50 16 5 N -0.69 -23.60 3.18 -478.54 -1.52 -25.12 16 6 C 0.16 5.24 4.31 86.38 0.37 5.62 16 7 C 0.16 3.87 2.90 44.97 0.13 4.00 16 8 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 9 C -0.12 -2.25 5.34 30.67 0.16 -2.09 16 10 C -0.11 -1.55 5.88 30.62 0.18 -1.37 16 11 C -0.13 -2.27 6.08 30.67 0.19 -2.09 16 12 C 0.11 2.58 6.44 86.31 0.56 3.14 16 13 N -0.63 -18.45 2.98 -812.17 -2.42 -20.88 16 14 C 0.68 27.11 7.93 179.06 1.42 28.53 16 15 O -0.61 -27.61 10.05 -4.01 -0.04 -27.65 16 16 N -0.70 -29.52 5.07 -478.53 -2.43 -31.94 16 17 C 0.21 9.88 4.61 86.38 0.40 10.28 16 18 C 0.01 0.57 2.07 -52.93 -0.11 0.46 16 19 C -0.50 -24.65 8.28 25.60 0.21 -24.43 16 20 H 0.06 2.72 7.82 -2.91 -0.02 2.70 16 21 C 0.04 1.96 5.31 84.65 0.45 2.41 16 22 N -0.88 -45.26 10.19 21.45 0.22 -45.04 16 23 Si 0.95 39.27 29.54 68.60 2.03 41.30 16 24 H -0.29 -12.10 7.11 99.48 0.71 -11.39 16 25 H -0.29 -11.86 7.11 99.48 0.71 -11.15 16 26 H -0.27 -10.59 7.11 99.48 0.71 -9.89 16 27 C -0.20 -8.80 9.96 30.62 0.30 -8.50 16 28 C -0.19 -7.68 9.92 30.62 0.30 -7.38 16 29 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.41 10.41 8.84 -92.71 -0.82 9.59 16 33 H 0.39 12.68 8.06 -92.71 -0.75 11.94 16 34 H 0.04 1.73 6.35 -2.39 -0.02 1.71 16 35 H 0.06 1.85 8.08 -2.38 -0.02 1.83 16 36 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.07 1.83 5.59 -2.39 -0.01 1.82 16 44 H 0.39 16.00 5.40 -92.71 -0.50 15.50 16 45 H 0.00 -0.08 8.09 -2.39 -0.02 -0.10 16 46 H 0.07 4.09 5.93 -2.39 -0.01 4.07 16 47 H 0.26 12.89 8.32 -92.71 -0.77 12.12 16 48 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 49 H 0.08 3.40 8.14 -2.39 -0.02 3.38 16 50 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 51 H 0.08 2.97 8.14 -2.38 -0.02 2.95 16 Total: -1.00 -68.00 396.99 -0.79 -68.79 By element: Atomic # 1 Polarization: 56.73 SS G_CDS: -1.11 Total: 55.62 kcal Atomic # 6 Polarization: 33.72 SS G_CDS: 7.42 Total: 41.14 kcal Atomic # 7 Polarization: -139.68 SS G_CDS: -9.01 Total: -148.69 kcal Atomic # 8 Polarization: -58.04 SS G_CDS: -0.11 Total: -58.15 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 2.03 Total: 41.30 kcal Total: -68.00 -0.79 -68.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875553506.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.173 kcal (2) G-P(sol) polarization free energy of solvation -68.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds