Wall clock time and date at job start Tue Mar 31 2020 21:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34772 * 119.99880 * 2 1 4 4 O 1.21588 * 120.00143 * 0.02562 * 3 2 1 5 5 N 1.34775 * 120.00394 * 180.02562 * 3 2 1 6 6 C 1.46501 * 120.00349 * 180.02562 * 5 3 2 7 7 C 1.53003 * 109.46837 * 182.39218 * 6 5 3 8 8 H 1.08996 * 109.58677 * 313.04821 * 7 6 5 9 9 C 1.53196 * 109.58086 * 192.62609 * 7 6 5 10 10 C 1.53045 * 109.30901 * 185.57674 * 9 7 6 11 11 C 1.53039 * 109.53898 * 61.36288 * 10 9 7 12 12 C 1.53196 * 109.31531 * 298.63598 * 11 10 9 13 13 N 1.46924 * 109.58759 * 73.33497 * 7 6 5 14 14 C 1.34777 * 120.63171 * 353.37362 * 13 7 6 15 15 O 1.21583 * 119.99636 * 354.78664 * 14 13 7 16 16 N 1.34777 * 119.99864 * 174.78486 * 14 13 7 17 17 C 1.46495 * 119.99554 * 185.65803 * 16 14 13 18 18 C 1.53006 * 109.47091 * 184.86512 * 17 16 14 19 19 C 1.50702 * 115.54658 * 304.45704 * 18 17 16 20 20 H 1.08007 * 119.99818 * 144.41944 * 19 18 17 21 21 C 1.37873 * 120.00416 * 324.41517 * 19 18 17 22 22 N 1.31516 * 119.99759 * 2.69365 * 21 19 18 23 23 Si 1.86795 * 120.00139 * 182.69226 * 21 19 18 24 24 H 1.48495 * 109.47526 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46936 * 120.00312 * 23 21 19 26 26 H 1.48497 * 109.47074 * 239.99860 * 23 21 19 27 27 C 1.52993 * 117.50010 * 158.78326 * 18 17 16 28 28 C 1.53003 * 117.49691 * 90.12095 * 18 17 16 29 29 H 1.08993 * 109.47251 * 299.99536 * 1 2 3 30 30 H 1.08997 * 109.46945 * 60.00542 * 1 2 3 31 31 H 1.08999 * 109.46777 * 179.97438 * 1 2 3 32 32 H 0.96998 * 119.99997 * 179.97438 * 2 1 3 33 33 H 0.97007 * 119.99671 * 359.97438 * 5 3 2 34 34 H 1.08996 * 109.47131 * 62.39088 * 6 5 3 35 35 H 1.08995 * 109.47070 * 302.39227 * 6 5 3 36 36 H 1.08999 * 109.49832 * 305.52442 * 9 7 6 37 37 H 1.08992 * 109.50040 * 65.59627 * 9 7 6 38 38 H 1.08994 * 109.46139 * 301.34318 * 10 9 7 39 39 H 1.09004 * 109.45838 * 181.38322 * 10 9 7 40 40 H 1.08997 * 109.50438 * 178.68092 * 11 10 9 41 41 H 1.09009 * 109.49757 * 58.58441 * 11 10 9 42 42 H 1.08997 * 109.58754 * 174.42194 * 12 11 10 43 43 H 1.08994 * 109.58519 * 294.84645 * 12 11 10 44 44 H 0.97003 * 120.00042 * 5.66655 * 16 14 13 45 45 H 1.08996 * 109.47598 * 304.86294 * 17 16 14 46 46 H 1.09004 * 109.47384 * 64.86877 * 17 16 14 47 47 H 0.96995 * 120.00180 * 185.00301 * 22 21 19 48 48 H 1.08999 * 117.50342 * 0.02562 * 27 18 17 49 49 H 1.09003 * 117.49979 * 145.02467 * 27 18 17 50 50 H 1.09000 * 117.49762 * 214.98036 * 28 18 17 51 51 H 1.08994 * 117.50033 * 359.97438 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5309 2.2202 0.0005 5 7 3.4866 1.1673 -0.0005 6 6 4.2191 2.4360 0.0000 7 6 5.7222 2.1571 -0.0609 8 1 5.9803 1.3853 0.6641 9 6 6.4959 3.4412 0.2542 10 6 7.9928 3.1917 0.0559 11 6 8.2597 2.8126 -1.4025 12 6 7.5060 1.5214 -1.7365 13 7 6.0850 1.7057 -1.4112 14 6 5.1326 1.4648 -2.3338 15 8 3.9581 1.5286 -2.0259 16 7 5.4820 1.1532 -3.5976 17 6 4.4513 1.0132 -4.6292 18 6 5.0962 0.5410 -5.9339 19 6 6.2204 1.4010 -6.4515 20 1 7.0648 0.9451 -6.9471 21 6 6.1709 2.7696 -6.2925 22 7 5.1689 3.3203 -5.6426 23 14 7.5271 3.8417 -7.0000 24 1 8.5311 2.9851 -7.6807 25 1 6.9448 4.7945 -7.9790 26 1 8.1831 4.5981 -5.9033 27 6 4.1907 -0.1343 -6.9656 28 6 5.1960 -0.9678 -6.1670 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.9500 -0.8400 0.0004 33 1 3.9717 0.3272 -0.0005 34 1 3.9886 2.9882 0.9111 35 1 3.9236 3.0265 -0.8672 36 1 6.1680 4.2370 -0.4146 37 1 6.3092 3.7342 1.2873 38 1 8.3149 2.3792 0.7071 39 1 8.5477 4.0968 0.3033 40 1 9.3287 2.6579 -1.5485 41 1 7.9151 3.6143 -2.0558 42 1 7.6121 1.3006 -2.7986 43 1 7.9118 0.6987 -1.1478 44 1 6.4160 1.0215 -3.8242 45 1 3.7099 0.2827 -4.3053 46 1 3.9663 1.9758 -4.7912 47 1 5.0954 4.2862 -5.5929 48 1 3.1353 -0.2420 -6.7152 49 1 4.4082 0.0430 -8.0189 50 1 6.0745 -1.3385 -6.6952 51 1 4.8026 -1.6241 -5.3908 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875553507.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:46 Heat of formation + Delta-G solvation = 6.349867 kcal Electronic energy + Delta-G solvation = -32121.877946 eV Core-core repulsion = 28058.795268 eV Total energy + Delta-G solvation = -4063.082678 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.37283 -39.05497 -37.41772 -36.44062 -34.87711 -33.98322 -32.90025 -32.31550 -31.96620 -31.14226 -27.29072 -26.12688 -25.55387 -24.86278 -23.98220 -21.87372 -21.25508 -20.81889 -20.27981 -19.25370 -19.01167 -18.15691 -17.19169 -16.26024 -15.98658 -15.66393 -15.14842 -14.98388 -14.70911 -14.39644 -14.19697 -14.13060 -13.92333 -13.82999 -13.53437 -13.32865 -12.95180 -12.82641 -12.52790 -12.35354 -12.06020 -12.03165 -11.90684 -11.75236 -11.37197 -11.13598 -11.10127 -10.92131 -10.71882 -10.61625 -10.54649 -10.49057 -10.26334 -9.68946 -9.62291 -9.01292 -8.89746 -8.83977 -8.68781 -8.41770 -8.25432 -7.87144 -7.54992 -5.98970 -4.20726 3.17252 3.19312 3.24845 3.28789 3.30696 3.89170 4.08512 4.27565 4.57502 4.67813 4.84067 4.87860 4.96814 5.08011 5.18628 5.29554 5.31321 5.37048 5.47669 5.52368 5.70568 5.70820 5.75341 5.86275 5.94526 5.96787 6.00649 6.05372 6.10370 6.12702 6.32066 6.36999 6.54350 6.56772 6.61834 6.76941 6.80732 6.87909 6.95690 7.09131 7.15500 7.25816 7.33869 7.57455 7.66652 7.83228 8.02946 8.32439 8.53020 8.75905 8.98492 9.19751 9.42846 9.55658 10.88347 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.009492 B = 0.004847 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2949.296557 B = 5775.496013 C = 7667.689176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.758 5.758 3 C 0.714 3.286 4 O -0.604 6.604 5 N -0.699 5.699 6 C 0.156 3.844 7 C 0.158 3.842 8 H 0.066 0.934 9 C -0.129 4.129 10 C -0.114 4.114 11 C -0.137 4.137 12 C 0.116 3.884 13 N -0.636 5.636 14 C 0.691 3.309 15 O -0.579 6.579 16 N -0.702 5.702 17 C 0.185 3.815 18 C 0.037 3.963 19 C -0.496 4.496 20 H 0.060 0.940 21 C 0.076 3.924 22 N -0.863 5.863 23 Si 0.890 3.110 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.284 1.284 27 C -0.198 4.198 28 C -0.212 4.212 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.391 0.609 33 H 0.385 0.615 34 H 0.050 0.950 35 H 0.092 0.908 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.084 0.916 43 H 0.059 0.941 44 H 0.391 0.609 45 H 0.016 0.984 46 H 0.110 0.890 47 H 0.261 0.739 48 H 0.066 0.934 49 H 0.079 0.921 50 H 0.074 0.926 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.681 -5.564 13.398 14.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.413 5.413 3 C 0.414 3.586 4 O -0.483 6.483 5 N -0.351 5.351 6 C 0.032 3.968 7 C 0.053 3.947 8 H 0.084 0.916 9 C -0.168 4.168 10 C -0.151 4.151 11 C -0.176 4.176 12 C -0.008 4.008 13 N -0.377 5.377 14 C 0.393 3.607 15 O -0.457 6.457 16 N -0.355 5.355 17 C 0.061 3.939 18 C 0.036 3.964 19 C -0.534 4.534 20 H 0.078 0.922 21 C -0.129 4.129 22 N -0.498 5.498 23 Si 0.717 3.283 24 H -0.198 1.198 25 H -0.209 1.209 26 H -0.210 1.210 27 C -0.237 4.237 28 C -0.249 4.249 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.223 0.777 33 H 0.218 0.782 34 H 0.068 0.932 35 H 0.110 0.890 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.103 0.897 43 H 0.078 0.922 44 H 0.227 0.773 45 H 0.034 0.966 46 H 0.128 0.872 47 H 0.072 0.928 48 H 0.085 0.915 49 H 0.097 0.903 50 H 0.092 0.908 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.179 -4.311 13.674 14.502 hybrid contribution 1.720 -0.327 -0.892 1.965 sum 3.900 -4.637 12.782 14.145 Atomic orbital electron populations 1.21249 0.79077 1.01084 1.01823 1.44816 1.07195 1.07278 1.82048 1.15704 0.81885 0.83698 0.77321 1.90853 1.68139 1.30469 1.58835 1.44611 1.04014 1.08631 1.77878 1.21187 0.87607 0.86456 1.01557 1.21154 0.94505 0.95604 0.83436 0.91634 1.21906 0.95321 0.97633 1.01933 1.21455 0.95756 1.01288 0.96624 1.21926 1.00026 0.98659 0.96939 1.21527 0.81140 0.96792 1.01361 1.47282 1.05396 1.73072 1.11903 1.16061 0.84751 0.78913 0.81005 1.91041 1.16292 1.59695 1.78678 1.45095 1.11209 1.72746 1.06451 1.20915 0.87560 1.01832 0.83593 1.19269 0.96341 0.88202 0.92583 1.20527 1.04191 0.90750 1.37902 0.92225 1.24984 0.95871 0.97971 0.94047 1.69885 1.30025 1.10809 1.39129 0.86574 0.82088 0.80614 0.78987 1.19799 1.20913 1.20971 1.22926 0.94611 1.08181 0.97987 1.22924 1.01205 0.97102 1.03670 0.93013 0.92690 0.91414 0.77657 0.78218 0.93247 0.89002 0.90926 0.90904 0.92053 0.91877 0.91145 0.91096 0.89744 0.92238 0.77278 0.96558 0.87221 0.92807 0.91540 0.90293 0.90786 0.91508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.39 10.70 59.85 0.64 2.03 16 2 N -0.76 -10.73 5.72 -72.07 -0.41 -11.14 16 3 C 0.71 13.05 7.87 -86.92 -0.68 12.36 16 4 O -0.60 -13.69 16.34 5.29 0.09 -13.60 16 5 N -0.70 -11.19 3.23 -65.23 -0.21 -11.40 16 6 C 0.16 2.52 4.31 -4.04 -0.02 2.50 16 7 C 0.16 2.06 2.90 -67.60 -0.20 1.86 16 8 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 9 C -0.13 -1.46 5.34 -26.61 -0.14 -1.60 16 10 C -0.11 -1.13 5.88 -26.69 -0.16 -1.29 16 11 C -0.14 -1.60 6.08 -26.61 -0.16 -1.77 16 12 C 0.12 1.49 6.43 -3.71 -0.02 1.47 16 13 N -0.64 -9.66 2.97 -170.91 -0.51 -10.16 16 14 C 0.69 13.50 8.02 -86.92 -0.70 12.81 16 15 O -0.58 -12.65 9.83 5.29 0.05 -12.60 16 16 N -0.70 -14.58 5.19 -65.23 -0.34 -14.92 16 17 C 0.18 4.34 4.64 -4.04 -0.02 4.33 16 18 C 0.04 0.86 2.04 -155.66 -0.32 0.54 16 19 C -0.50 -12.35 8.35 -34.44 -0.29 -12.64 16 20 H 0.06 1.50 7.82 -52.48 -0.41 1.09 16 21 C 0.08 1.90 5.34 -17.82 -0.10 1.80 16 22 N -0.86 -22.72 10.23 55.43 0.57 -22.15 16 23 Si 0.89 19.75 29.54 -169.99 -5.02 14.73 16 24 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 27 C -0.20 -4.35 9.96 -26.69 -0.27 -4.61 16 28 C -0.21 -4.38 9.93 -26.69 -0.27 -4.64 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.39 4.38 8.84 -40.82 -0.36 4.02 16 33 H 0.39 5.39 8.38 -40.82 -0.34 5.05 16 34 H 0.05 0.75 8.09 -51.93 -0.42 0.33 16 35 H 0.09 1.92 6.35 -51.93 -0.33 1.59 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 1.01 8.14 -51.92 -0.42 0.59 16 42 H 0.08 1.22 5.57 -51.93 -0.29 0.93 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.39 7.88 5.44 -40.82 -0.22 7.66 16 45 H 0.02 0.39 8.05 -51.93 -0.42 -0.03 16 46 H 0.11 3.00 5.83 -51.93 -0.30 2.70 16 47 H 0.26 6.80 8.32 -40.82 -0.34 6.46 16 48 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 49 H 0.08 1.73 8.14 -51.93 -0.42 1.30 16 50 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 51 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 396.98 15.07 5.98 5.98 Total: -1.00 -31.34 396.98 -11.06 -42.40 By element: Atomic # 1 Polarization: 28.28 SS G_CDS: -8.57 Total: 19.71 kcal Atomic # 6 Polarization: 15.83 SS G_CDS: -2.69 Total: 13.15 kcal Atomic # 7 Polarization: -68.87 SS G_CDS: -0.90 Total: -69.77 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: 0.14 Total: -26.20 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.34 -11.06 -42.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875553507.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.754 kcal (2) G-P(sol) polarization free energy of solvation -31.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds