Wall clock time and date at job start Tue Mar 31 2020 21:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34772 * 119.99880 * 2 1 4 4 O 1.21588 * 120.00143 * 0.02562 * 3 2 1 5 5 N 1.34775 * 120.00394 * 180.02562 * 3 2 1 6 6 C 1.46501 * 120.00349 * 180.02562 * 5 3 2 7 7 C 1.53003 * 109.46837 * 182.39218 * 6 5 3 8 8 H 1.08996 * 109.58677 * 313.04821 * 7 6 5 9 9 C 1.53196 * 109.58086 * 192.62609 * 7 6 5 10 10 C 1.53045 * 109.30901 * 185.57674 * 9 7 6 11 11 C 1.53039 * 109.53898 * 61.36288 * 10 9 7 12 12 C 1.53196 * 109.31531 * 298.63598 * 11 10 9 13 13 N 1.46924 * 109.58759 * 73.33497 * 7 6 5 14 14 C 1.34777 * 120.63171 * 353.37362 * 13 7 6 15 15 O 1.21583 * 119.99636 * 354.78664 * 14 13 7 16 16 N 1.34777 * 119.99864 * 174.78486 * 14 13 7 17 17 C 1.46495 * 119.99554 * 185.65803 * 16 14 13 18 18 C 1.53006 * 109.47091 * 184.86512 * 17 16 14 19 19 C 1.50702 * 115.54658 * 304.45704 * 18 17 16 20 20 H 1.08007 * 119.99818 * 144.41944 * 19 18 17 21 21 C 1.37873 * 120.00416 * 324.41517 * 19 18 17 22 22 N 1.31516 * 119.99759 * 2.69365 * 21 19 18 23 23 Si 1.86795 * 120.00139 * 182.69226 * 21 19 18 24 24 H 1.48495 * 109.47526 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46936 * 120.00312 * 23 21 19 26 26 H 1.48497 * 109.47074 * 239.99860 * 23 21 19 27 27 C 1.52993 * 117.50010 * 158.78326 * 18 17 16 28 28 C 1.53003 * 117.49691 * 90.12095 * 18 17 16 29 29 H 1.08993 * 109.47251 * 299.99536 * 1 2 3 30 30 H 1.08997 * 109.46945 * 60.00542 * 1 2 3 31 31 H 1.08999 * 109.46777 * 179.97438 * 1 2 3 32 32 H 0.96998 * 119.99997 * 179.97438 * 2 1 3 33 33 H 0.97007 * 119.99671 * 359.97438 * 5 3 2 34 34 H 1.08996 * 109.47131 * 62.39088 * 6 5 3 35 35 H 1.08995 * 109.47070 * 302.39227 * 6 5 3 36 36 H 1.08999 * 109.49832 * 305.52442 * 9 7 6 37 37 H 1.08992 * 109.50040 * 65.59627 * 9 7 6 38 38 H 1.08994 * 109.46139 * 301.34318 * 10 9 7 39 39 H 1.09004 * 109.45838 * 181.38322 * 10 9 7 40 40 H 1.08997 * 109.50438 * 178.68092 * 11 10 9 41 41 H 1.09009 * 109.49757 * 58.58441 * 11 10 9 42 42 H 1.08997 * 109.58754 * 174.42194 * 12 11 10 43 43 H 1.08994 * 109.58519 * 294.84645 * 12 11 10 44 44 H 0.97003 * 120.00042 * 5.66655 * 16 14 13 45 45 H 1.08996 * 109.47598 * 304.86294 * 17 16 14 46 46 H 1.09004 * 109.47384 * 64.86877 * 17 16 14 47 47 H 0.96995 * 120.00180 * 185.00301 * 22 21 19 48 48 H 1.08999 * 117.50342 * 0.02562 * 27 18 17 49 49 H 1.09003 * 117.49979 * 145.02467 * 27 18 17 50 50 H 1.09000 * 117.49762 * 214.98036 * 28 18 17 51 51 H 1.08994 * 117.50033 * 359.97438 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5309 2.2202 0.0005 5 7 3.4866 1.1673 -0.0005 6 6 4.2191 2.4360 0.0000 7 6 5.7222 2.1571 -0.0609 8 1 5.9803 1.3853 0.6641 9 6 6.4959 3.4412 0.2542 10 6 7.9928 3.1917 0.0559 11 6 8.2597 2.8126 -1.4025 12 6 7.5060 1.5214 -1.7365 13 7 6.0850 1.7057 -1.4112 14 6 5.1326 1.4648 -2.3338 15 8 3.9581 1.5286 -2.0259 16 7 5.4820 1.1532 -3.5976 17 6 4.4513 1.0132 -4.6292 18 6 5.0962 0.5410 -5.9339 19 6 6.2204 1.4010 -6.4515 20 1 7.0648 0.9451 -6.9471 21 6 6.1709 2.7696 -6.2925 22 7 5.1689 3.3203 -5.6426 23 14 7.5271 3.8417 -7.0000 24 1 8.5311 2.9851 -7.6807 25 1 6.9448 4.7945 -7.9790 26 1 8.1831 4.5981 -5.9033 27 6 4.1907 -0.1343 -6.9656 28 6 5.1960 -0.9678 -6.1670 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.9500 -0.8400 0.0004 33 1 3.9717 0.3272 -0.0005 34 1 3.9886 2.9882 0.9111 35 1 3.9236 3.0265 -0.8672 36 1 6.1680 4.2370 -0.4146 37 1 6.3092 3.7342 1.2873 38 1 8.3149 2.3792 0.7071 39 1 8.5477 4.0968 0.3033 40 1 9.3287 2.6579 -1.5485 41 1 7.9151 3.6143 -2.0558 42 1 7.6121 1.3006 -2.7986 43 1 7.9118 0.6987 -1.1478 44 1 6.4160 1.0215 -3.8242 45 1 3.7099 0.2827 -4.3053 46 1 3.9663 1.9758 -4.7912 47 1 5.0954 4.2862 -5.5929 48 1 3.1353 -0.2420 -6.7152 49 1 4.4082 0.0430 -8.0189 50 1 6.0745 -1.3385 -6.6952 51 1 4.8026 -1.6241 -5.3908 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875553507.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:44 Heat of formation + Delta-G solvation = -15.003177 kcal Electronic energy + Delta-G solvation = -32122.803883 eV Core-core repulsion = 28058.795268 eV Total energy + Delta-G solvation = -4064.008616 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.71711 -40.45508 -38.95411 -37.94812 -36.19721 -35.36276 -34.43114 -34.10798 -33.31049 -32.29519 -28.47227 -27.80690 -27.21126 -26.26839 -25.07721 -23.11193 -22.93020 -22.01917 -21.55638 -21.07691 -20.36542 -19.55623 -18.61359 -17.90660 -17.28229 -17.04355 -16.73437 -16.55883 -16.17726 -15.75808 -15.46779 -15.38990 -15.20020 -15.08651 -14.89995 -14.83796 -14.35475 -14.09537 -13.88513 -13.69508 -13.51794 -13.34679 -13.21124 -13.04702 -12.98285 -12.95158 -12.56193 -12.27419 -12.12099 -12.04587 -11.84559 -11.59688 -11.50129 -11.43399 -11.22186 -10.86661 -10.69508 -10.32113 -10.21044 -10.08999 -9.77617 -9.16381 -9.14021 -7.91444 -6.19435 1.38939 1.45209 1.53723 1.89549 1.98396 2.40958 2.48528 2.59959 3.00617 3.32313 3.54797 3.65180 3.77665 3.92491 4.03697 4.18146 4.25166 4.29865 4.31828 4.45422 4.53691 4.55946 4.66195 4.68834 4.71519 4.82598 4.84491 4.90061 4.94094 4.95177 4.99359 5.06185 5.10766 5.14018 5.22967 5.27194 5.31304 5.51120 5.52661 5.61375 5.64968 5.77532 5.86641 6.02683 6.07953 6.15965 6.25207 6.40399 6.82820 7.30475 7.41940 7.46434 7.83651 8.01139 8.92313 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.009492 B = 0.004847 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2949.296557 B = 5775.496013 C = 7667.689176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.746 5.746 3 C 0.701 3.299 4 O -0.656 6.656 5 N -0.687 5.687 6 C 0.162 3.838 7 C 0.162 3.838 8 H 0.104 0.896 9 C -0.126 4.126 10 C -0.106 4.106 11 C -0.135 4.135 12 C 0.112 3.888 13 N -0.630 5.630 14 C 0.685 3.315 15 O -0.607 6.607 16 N -0.703 5.703 17 C 0.204 3.796 18 C 0.009 3.991 19 C -0.499 4.499 20 H 0.058 0.942 21 C 0.038 3.962 22 N -0.888 5.888 23 Si 0.946 3.054 24 H -0.264 1.264 25 H -0.291 1.291 26 H -0.283 1.283 27 C -0.202 4.202 28 C -0.182 4.182 29 H 0.050 0.950 30 H 0.029 0.971 31 H 0.113 0.887 32 H 0.408 0.592 33 H 0.397 0.603 34 H 0.059 0.941 35 H 0.035 0.965 36 H 0.041 0.959 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.094 0.906 41 H 0.034 0.966 42 H 0.065 0.935 43 H 0.096 0.904 44 H 0.394 0.606 45 H 0.006 0.994 46 H 0.067 0.933 47 H 0.253 0.747 48 H 0.070 0.930 49 H 0.077 0.923 50 H 0.085 0.915 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.179 -7.554 15.057 17.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.402 5.402 3 C 0.401 3.599 4 O -0.540 6.540 5 N -0.339 5.339 6 C 0.037 3.963 7 C 0.058 3.942 8 H 0.121 0.879 9 C -0.165 4.165 10 C -0.143 4.143 11 C -0.173 4.173 12 C -0.011 4.011 13 N -0.369 5.369 14 C 0.387 3.613 15 O -0.488 6.488 16 N -0.357 5.357 17 C 0.079 3.921 18 C 0.008 3.992 19 C -0.537 4.537 20 H 0.076 0.924 21 C -0.164 4.164 22 N -0.525 5.525 23 Si 0.772 3.228 24 H -0.188 1.188 25 H -0.218 1.218 26 H -0.209 1.209 27 C -0.241 4.241 28 C -0.219 4.219 29 H 0.068 0.932 30 H 0.048 0.952 31 H 0.131 0.869 32 H 0.243 0.757 33 H 0.232 0.768 34 H 0.077 0.923 35 H 0.054 0.946 36 H 0.060 0.940 37 H 0.118 0.882 38 H 0.108 0.892 39 H 0.095 0.905 40 H 0.112 0.888 41 H 0.053 0.947 42 H 0.083 0.917 43 H 0.114 0.886 44 H 0.231 0.769 45 H 0.024 0.976 46 H 0.085 0.915 47 H 0.063 0.937 48 H 0.089 0.911 49 H 0.095 0.905 50 H 0.103 0.897 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.744 -6.362 15.352 17.282 hybrid contribution 0.906 0.269 -1.411 1.698 sum 5.650 -6.094 13.941 16.230 Atomic orbital electron populations 1.21412 0.77925 1.03622 1.00523 1.44752 1.08005 1.06785 1.80682 1.16099 0.82537 0.84051 0.77256 1.90806 1.69274 1.32673 1.61262 1.44494 1.03444 1.09140 1.76821 1.21047 0.89858 0.86033 0.99357 1.21366 0.92341 0.97631 0.82845 0.87859 1.21926 0.96306 0.95583 1.02729 1.21442 0.94343 1.02978 0.95535 1.21918 1.01047 0.96683 0.97677 1.21748 0.79646 0.98732 1.00954 1.47305 1.05788 1.71985 1.11857 1.16274 0.85139 0.78717 0.81215 1.91039 1.17869 1.60672 1.79210 1.44933 1.10673 1.73501 1.06564 1.20417 0.87933 0.99049 0.84707 1.19318 0.96908 0.90136 0.92841 1.20689 1.04407 0.91086 1.37501 0.92367 1.25561 0.97394 0.99033 0.94365 1.70101 1.31690 1.10231 1.40447 0.85698 0.80000 0.78990 0.78072 1.18829 1.21776 1.20854 1.22943 0.95113 1.08375 0.97670 1.22896 1.00776 0.95253 1.03013 0.93163 0.95210 0.86889 0.75684 0.76841 0.92340 0.94648 0.94037 0.88213 0.89234 0.90538 0.88765 0.94705 0.91695 0.88622 0.76927 0.97621 0.91521 0.93725 0.91116 0.90461 0.89696 0.90019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.64 10.70 127.77 1.37 4.01 16 2 N -0.75 -20.77 5.72 -500.20 -2.86 -23.63 16 3 C 0.70 26.17 7.87 179.06 1.41 27.58 16 4 O -0.66 -31.23 16.34 -3.99 -0.07 -31.29 16 5 N -0.69 -22.00 3.23 -478.54 -1.55 -23.55 16 6 C 0.16 5.31 4.31 86.38 0.37 5.68 16 7 C 0.16 3.94 2.90 44.98 0.13 4.07 16 8 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 9 C -0.13 -2.62 5.34 30.67 0.16 -2.45 16 10 C -0.11 -1.72 5.88 30.62 0.18 -1.54 16 11 C -0.13 -2.86 6.08 30.67 0.19 -2.67 16 12 C 0.11 2.65 6.43 86.36 0.56 3.21 16 13 N -0.63 -18.60 2.97 -812.90 -2.42 -21.02 16 14 C 0.69 27.36 8.02 179.05 1.44 28.80 16 15 O -0.61 -27.68 9.83 -3.98 -0.04 -27.72 16 16 N -0.70 -29.89 5.19 -478.54 -2.48 -32.38 16 17 C 0.20 9.93 4.64 86.38 0.40 10.33 16 18 C 0.01 0.41 2.04 -52.93 -0.11 0.30 16 19 C -0.50 -24.91 8.35 25.60 0.21 -24.69 16 20 H 0.06 2.87 7.82 -2.91 -0.02 2.85 16 21 C 0.04 1.94 5.34 84.65 0.45 2.39 16 22 N -0.89 -48.65 10.23 21.45 0.22 -48.43 16 23 Si 0.95 40.98 29.54 68.60 2.03 43.01 16 24 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 25 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 26 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 27 C -0.20 -8.80 9.96 30.62 0.30 -8.49 16 28 C -0.18 -7.25 9.93 30.62 0.30 -6.95 16 29 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.11 1.66 8.14 -2.39 -0.02 1.65 16 32 H 0.41 8.49 8.84 -92.71 -0.82 7.67 16 33 H 0.40 10.61 8.38 -92.70 -0.78 9.84 16 34 H 0.06 1.79 8.09 -2.39 -0.02 1.77 16 35 H 0.04 1.58 6.35 -2.39 -0.02 1.57 16 36 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 40 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.03 0.98 8.14 -2.38 -0.02 0.96 16 42 H 0.06 1.81 5.57 -2.39 -0.01 1.80 16 43 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.39 16.06 5.44 -92.71 -0.50 15.55 16 45 H 0.01 0.28 8.05 -2.39 -0.02 0.26 16 46 H 0.07 3.87 5.83 -2.38 -0.01 3.86 16 47 H 0.25 13.80 8.32 -92.71 -0.77 13.03 16 48 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 49 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 50 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 51 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 Total: -1.00 -73.31 396.98 -0.94 -74.26 By element: Atomic # 1 Polarization: 52.34 SS G_CDS: -1.15 Total: 51.19 kcal Atomic # 6 Polarization: 32.19 SS G_CDS: 7.37 Total: 39.56 kcal Atomic # 7 Polarization: -139.91 SS G_CDS: -9.08 Total: -149.00 kcal Atomic # 8 Polarization: -58.91 SS G_CDS: -0.10 Total: -59.01 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.01 kcal Total: -73.31 -0.94 -74.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875553507.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.253 kcal (2) G-P(sol) polarization free energy of solvation -73.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds