Wall clock time and date at job start Tue Mar 31 2020 21:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86797 * 120.00022 * 2 1 4 4 H 1.48496 * 109.47173 * 240.00368 * 3 2 1 5 5 H 1.48500 * 109.46878 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46945 * 120.00120 * 3 2 1 7 7 C 1.37874 * 119.99854 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00169 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00184 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.47420 * 184.57404 * 9 7 2 11 11 C 1.46898 * 110.99937 * 67.33464 * 10 9 7 12 12 C 1.53007 * 109.46883 * 72.08604 * 11 10 9 13 13 N 1.46905 * 109.47027 * 185.11511 * 12 11 10 14 14 C 1.47013 * 111.00104 * 293.63781 * 13 12 11 15 15 C 1.53092 * 109.25518 * 177.60588 * 14 13 12 16 16 O 1.43014 * 109.26067 * 56.85058 * 15 14 13 17 17 C 1.43022 * 113.73637 * 301.32751 * 16 15 14 18 18 C 1.47013 * 110.99973 * 170.00068 * 13 12 11 19 19 C 1.46904 * 110.99897 * 303.38491 * 10 9 7 20 20 C 1.53004 * 109.46949 * 286.90790 * 19 10 9 21 21 H 1.09003 * 110.24604 * 302.20900 * 20 19 10 22 22 C 1.55188 * 110.27689 * 180.09839 * 20 19 10 23 23 C 1.54012 * 100.75737 * 205.92153 * 22 20 19 24 24 C 1.52406 * 115.92447 * 263.62936 * 23 22 20 25 25 C 1.54032 * 86.74840 * 217.10568 * 24 23 22 26 26 C 1.52600 * 116.00198 * 161.87261 * 23 22 20 27 27 C 1.53080 * 103.78934 * 32.70920 * 23 22 20 28 28 O 1.43589 * 107.17450 * 340.03471 * 27 23 22 29 29 H 0.97003 * 119.99785 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.47211 * 64.57482 * 9 7 2 31 31 H 1.09005 * 109.47265 * 304.57886 * 9 7 2 32 32 H 1.08998 * 109.47084 * 192.08313 * 11 10 9 33 33 H 1.09001 * 109.47059 * 312.08902 * 11 10 9 34 34 H 1.08997 * 109.47282 * 305.11708 * 12 11 10 35 35 H 1.08999 * 109.47070 * 65.12056 * 12 11 10 36 36 H 1.08998 * 109.50614 * 297.53980 * 14 13 12 37 37 H 1.08999 * 109.50499 * 57.67301 * 14 13 12 38 38 H 1.08999 * 109.51008 * 296.90878 * 15 14 13 39 39 H 1.09002 * 109.50826 * 176.78241 * 15 14 13 40 40 H 1.09001 * 109.50381 * 298.73500 * 17 16 15 41 41 H 1.08996 * 109.54301 * 178.62660 * 17 16 15 42 42 H 1.08999 * 109.50564 * 302.32939 * 18 13 12 43 43 H 1.09002 * 109.50483 * 62.45926 * 18 13 12 44 44 H 1.09000 * 109.46891 * 166.91281 * 19 10 9 45 45 H 1.08996 * 109.47099 * 46.91057 * 19 10 9 46 46 H 1.08997 * 111.16230 * 88.04415 * 22 20 19 47 47 H 1.09002 * 111.15930 * 323.79288 * 22 20 19 48 48 H 1.08995 * 113.68245 * 102.61365 * 24 23 22 49 49 H 1.09006 * 113.68414 * 331.59073 * 24 23 22 50 50 H 1.09000 * 113.57141 * 138.96407 * 25 24 23 51 51 H 1.09006 * 113.56840 * 269.72016 * 25 24 23 52 52 H 1.09003 * 113.59776 * 28.37890 * 26 23 22 53 53 H 1.09001 * 113.82961 * 257.30669 * 26 23 22 54 54 H 1.09002 * 109.89416 * 99.42033 * 27 23 22 55 55 H 1.09001 * 109.90079 * 220.64124 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2019 -3.6135 0.1093 11 6 2.8569 -3.6190 1.4241 12 6 1.8546 -4.0638 2.4913 13 7 2.4720 -3.9523 3.8197 14 6 3.5786 -4.9087 3.9683 15 6 4.2300 -4.7179 5.3405 16 8 3.2385 -4.8745 6.3592 17 6 2.1462 -3.9583 6.2452 18 6 1.4737 -4.1415 4.8822 19 6 3.1942 -3.5675 -0.9730 20 6 2.5338 -3.9852 -2.2884 21 1 2.1065 -4.9837 -2.1957 22 6 3.5673 -3.9455 -3.4454 23 6 2.6388 -3.7164 -4.6526 24 6 2.2316 -4.9647 -5.4264 25 6 2.3323 -4.1022 -6.6986 26 6 3.3079 -3.1978 -5.9223 27 6 1.5019 -2.8649 -4.0820 28 8 1.5153 -3.0397 -2.6568 29 1 -0.4850 0.8401 0.0004 30 1 0.6870 -2.5930 -0.9285 31 1 0.5646 -2.5224 0.8459 32 1 3.6999 -4.3097 1.4072 33 1 3.2137 -2.6156 1.6565 34 1 0.9706 -3.4278 2.4470 35 1 1.5667 -5.0993 2.3103 36 1 3.1945 -5.9254 3.8859 37 1 4.3181 -4.7339 3.1869 38 1 4.6613 -3.7188 5.4029 39 1 5.0139 -5.4626 5.4781 40 1 2.5170 -2.9372 6.3340 41 1 1.4229 -4.1530 7.0370 42 1 0.6768 -3.4067 4.7678 43 1 1.0560 -5.1460 4.8144 44 1 4.0127 -4.2501 -0.7446 45 1 3.5823 -2.5534 -1.0671 46 1 4.0980 -4.8937 -3.5316 47 1 4.2642 -3.1165 -3.3222 48 1 1.2197 -5.3051 -5.2070 49 1 2.9680 -5.7671 -5.3819 50 1 2.7931 -4.6192 -7.5403 51 1 1.3980 -3.6080 -6.9652 52 1 4.3520 -3.4959 -6.0183 53 1 3.1528 -2.1334 -6.0985 54 1 1.6645 -1.8156 -4.3286 55 1 0.5474 -3.2001 -4.4879 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878159402.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:27 Heat of formation + Delta-G solvation = -72.870348 kcal Electronic energy + Delta-G solvation = -31292.656076 eV Core-core repulsion = 27329.678495 eV Total energy + Delta-G solvation = -3962.977581 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.45601 -40.55160 -38.91546 -37.52917 -36.42399 -34.45391 -32.43730 -32.13942 -30.80664 -29.51499 -28.53937 -26.94531 -26.64134 -25.88555 -24.95528 -24.12178 -23.19657 -21.90709 -21.39661 -21.16708 -19.46855 -18.39053 -17.63058 -17.41319 -17.12341 -16.75057 -16.68989 -16.33471 -16.05046 -16.01612 -15.95190 -15.77389 -15.41661 -15.25723 -14.65468 -14.60242 -14.40097 -13.97654 -13.75825 -13.64534 -13.31464 -13.18667 -13.02491 -12.87148 -12.78886 -12.69101 -12.54771 -12.48177 -12.31617 -12.13044 -12.03349 -11.91681 -11.81563 -11.65083 -11.49828 -11.29773 -11.14802 -11.09536 -10.92947 -10.64199 -10.42264 -10.23924 -9.36193 -8.91858 -8.03658 -6.16538 1.34694 1.36249 1.43098 2.41967 2.66904 2.95448 3.07632 3.23580 3.41070 3.47021 3.61448 3.84189 3.91443 3.95649 3.97755 4.04173 4.11327 4.18917 4.24437 4.31359 4.35528 4.38657 4.45217 4.49010 4.57016 4.61227 4.67457 4.73556 4.79444 4.81121 4.82199 4.83756 4.89572 4.90721 4.91346 4.96121 4.98260 5.00139 5.05421 5.10457 5.18257 5.23162 5.33554 5.39815 5.44231 5.53324 5.61832 5.95104 6.02743 6.03111 6.16892 6.20963 6.37499 6.40624 6.68887 7.02584 7.49658 8.99701 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010470 B = 0.003267 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2673.786122 B = 8569.045251 C =10433.826428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.012 3.988 3 Si 0.943 3.057 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.525 4.525 8 H 0.048 0.952 9 C 0.205 3.795 10 N -0.540 5.540 11 C 0.074 3.926 12 C 0.081 3.919 13 N -0.550 5.550 14 C 0.017 3.983 15 C 0.064 3.936 16 O -0.400 6.400 17 C 0.068 3.932 18 C 0.019 3.981 19 C 0.060 3.940 20 C 0.091 3.909 21 H 0.065 0.935 22 C -0.125 4.125 23 C -0.117 4.117 24 C -0.120 4.120 25 C -0.133 4.133 26 C -0.122 4.122 27 C 0.064 3.936 28 O -0.383 6.383 29 H 0.258 0.742 30 H 0.034 0.966 31 H -0.007 1.007 32 H 0.075 0.925 33 H 0.022 0.978 34 H 0.048 0.952 35 H 0.036 0.964 36 H 0.041 0.959 37 H 0.092 0.908 38 H 0.056 0.944 39 H 0.122 0.878 40 H 0.056 0.944 41 H 0.119 0.881 42 H 0.078 0.922 43 H 0.041 0.959 44 H 0.091 0.909 45 H 0.028 0.972 46 H 0.106 0.894 47 H 0.070 0.930 48 H 0.061 0.939 49 H 0.101 0.899 50 H 0.086 0.914 51 H 0.075 0.925 52 H 0.100 0.900 53 H 0.061 0.939 54 H 0.049 0.951 55 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.327 -12.587 -2.872 15.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.186 4.186 3 Si 0.769 3.231 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.565 4.565 8 H 0.066 0.934 9 C 0.079 3.921 10 N -0.263 5.263 11 C -0.055 4.055 12 C -0.047 4.047 13 N -0.276 5.276 14 C -0.110 4.110 15 C -0.012 4.012 16 O -0.319 6.319 17 C -0.008 4.008 18 C -0.110 4.110 19 C -0.068 4.068 20 C 0.034 3.966 21 H 0.083 0.917 22 C -0.163 4.163 23 C -0.117 4.117 24 C -0.157 4.157 25 C -0.170 4.170 26 C -0.159 4.159 27 C -0.012 4.012 28 O -0.303 6.303 29 H 0.067 0.933 30 H 0.052 0.948 31 H 0.011 0.989 32 H 0.094 0.906 33 H 0.041 0.959 34 H 0.067 0.933 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.110 0.890 38 H 0.075 0.925 39 H 0.140 0.860 40 H 0.074 0.926 41 H 0.137 0.863 42 H 0.097 0.903 43 H 0.059 0.941 44 H 0.109 0.891 45 H 0.046 0.954 46 H 0.124 0.876 47 H 0.089 0.911 48 H 0.080 0.920 49 H 0.120 0.880 50 H 0.105 0.895 51 H 0.094 0.906 52 H 0.118 0.882 53 H 0.080 0.920 54 H 0.067 0.933 55 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.976 -12.476 -2.572 15.583 hybrid contribution -0.111 1.601 -0.302 1.633 sum 8.865 -10.875 -2.874 14.322 Atomic orbital electron populations 1.70075 1.07321 1.27030 1.52477 1.25624 0.95417 1.02052 0.95486 0.85849 0.78581 0.80083 0.78577 1.19884 1.21045 1.19846 1.21770 0.92614 0.93072 1.48994 0.93388 1.19507 0.91084 0.85863 0.95689 1.62399 1.16996 1.45165 1.01785 1.21799 0.95649 0.99145 0.88881 1.21784 0.96843 0.98698 0.87385 1.62111 1.11161 1.51807 1.02531 1.22875 0.94662 0.93820 0.99692 1.22796 0.90556 1.02730 0.85136 1.87924 1.33953 1.58845 1.51198 1.22723 0.88991 0.93349 0.95786 1.22788 0.95050 1.00649 0.92480 1.22233 0.93853 0.99856 0.90847 1.23012 0.87843 0.91964 0.93822 0.91684 1.23044 0.97168 1.03513 0.92560 1.22469 0.95722 0.98385 0.95130 1.22803 1.01998 0.95564 0.95380 1.22876 0.99536 0.97646 0.96965 1.22772 0.99896 0.99690 0.93583 1.22774 0.97838 0.98466 0.82135 1.88880 1.56555 1.63856 1.21019 0.93271 0.94842 0.98878 0.90643 0.95940 0.93299 0.94564 0.94071 0.88978 0.92533 0.86022 0.92576 0.86278 0.90327 0.94064 0.89124 0.95371 0.87564 0.91122 0.91971 0.88034 0.89524 0.90624 0.88192 0.91980 0.93290 0.92107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.63 13.29 21.45 0.28 -57.35 16 2 C 0.01 0.72 5.46 84.65 0.46 1.18 16 3 Si 0.94 46.03 29.54 68.60 2.03 48.05 16 4 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 5 H -0.28 -13.66 7.11 99.48 0.71 -12.96 16 6 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 7 C -0.53 -29.93 7.28 25.60 0.19 -29.75 16 8 H 0.05 2.71 6.00 -2.91 -0.02 2.70 16 9 C 0.20 11.07 4.59 85.56 0.39 11.46 16 10 N -0.54 -23.33 4.61 -900.78 -4.16 -27.49 16 11 C 0.07 2.87 4.66 86.31 0.40 3.27 16 12 C 0.08 2.99 5.09 86.30 0.44 3.43 16 13 N -0.55 -17.54 4.73 -895.22 -4.23 -21.77 16 14 C 0.02 0.44 5.44 86.31 0.47 0.91 16 15 C 0.06 1.43 7.01 72.01 0.50 1.94 16 16 O -0.40 -10.14 10.83 -148.98 -1.61 -11.76 16 17 C 0.07 1.62 7.01 72.01 0.50 2.13 16 18 C 0.02 0.52 5.64 86.31 0.49 1.01 16 19 C 0.06 2.29 4.66 86.30 0.40 2.69 16 20 C 0.09 3.18 3.68 31.35 0.12 3.29 16 21 H 0.07 2.21 8.14 -2.39 -0.02 2.20 16 22 C -0.12 -3.25 5.95 31.69 0.19 -3.07 16 23 C -0.12 -2.91 0.93 -52.16 -0.05 -2.96 16 24 C -0.12 -2.35 7.33 30.75 0.23 -2.13 16 25 C -0.13 -2.30 7.99 31.28 0.25 -2.05 16 26 C -0.12 -2.44 7.44 30.81 0.23 -2.21 16 27 C 0.06 2.21 7.20 72.01 0.52 2.73 16 28 O -0.38 -16.63 8.04 -148.98 -1.20 -17.83 16 29 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 30 H 0.03 2.01 5.48 -2.39 -0.01 2.00 16 31 H -0.01 -0.41 6.40 -2.38 -0.02 -0.42 16 32 H 0.08 2.45 6.33 -2.39 -0.02 2.43 16 33 H 0.02 1.02 6.81 -2.39 -0.02 1.00 16 34 H 0.05 2.15 6.37 -2.39 -0.02 2.14 16 35 H 0.04 1.28 8.12 -2.39 -0.02 1.26 16 36 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.09 2.22 6.49 -2.39 -0.02 2.21 16 38 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.08 2.31 8.09 -2.39 -0.02 2.29 16 43 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.09 2.77 7.70 -2.39 -0.02 2.76 16 45 H 0.03 1.24 5.83 -2.39 -0.01 1.23 16 46 H 0.11 2.09 7.98 -2.39 -0.02 2.07 16 47 H 0.07 1.94 8.05 -2.39 -0.02 1.92 16 48 H 0.06 1.32 8.03 -2.39 -0.02 1.30 16 49 H 0.10 1.61 8.04 -2.38 -0.02 1.59 16 50 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 51 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 52 H 0.10 1.65 8.14 -2.39 -0.02 1.64 16 53 H 0.06 1.34 8.02 -2.39 -0.02 1.32 16 54 H 0.05 1.78 7.99 -2.39 -0.02 1.76 16 55 H 0.06 1.98 7.88 -2.39 -0.02 1.96 16 Total: -1.00 -70.13 409.03 -2.31 -72.45 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: 0.84 Total: 23.81 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: 5.73 Total: -8.12 kcal Atomic # 7 Polarization: -98.50 SS G_CDS: -8.10 Total: -106.61 kcal Atomic # 8 Polarization: -26.78 SS G_CDS: -2.81 Total: -29.59 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.05 kcal Total: -70.13 -2.31 -72.45 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878159402.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.425 kcal (2) G-P(sol) polarization free energy of solvation -70.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds