Wall clock time and date at job start Tue Mar 31 2020 21:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00141 * 2 1 4 4 H 1.48503 * 109.47380 * 270.00318 * 3 2 1 5 5 H 1.48505 * 109.46953 * 29.99966 * 3 2 1 6 6 H 1.48492 * 109.47354 * 149.99781 * 3 2 1 7 7 C 1.37881 * 119.99982 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99793 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00317 * 0.02562 * 7 2 1 10 10 N 1.46891 * 109.47217 * 185.14505 * 9 7 2 11 11 C 1.46903 * 110.99978 * 293.66604 * 10 9 7 12 12 C 1.52997 * 109.47313 * 288.07067 * 11 10 9 13 13 N 1.46901 * 109.47404 * 185.09087 * 12 11 10 14 14 C 1.47015 * 111.00079 * 293.63348 * 13 12 11 15 15 C 1.53092 * 109.26192 * 177.60518 * 14 13 12 16 16 O 1.43018 * 109.25497 * 56.84981 * 15 14 13 17 17 C 1.43020 * 113.73943 * 301.32598 * 16 15 14 18 18 C 1.47010 * 111.00256 * 169.99727 * 13 12 11 19 19 C 1.46894 * 111.00549 * 57.62364 * 10 9 7 20 20 C 1.52992 * 109.47304 * 76.30531 * 19 10 9 21 21 H 1.09002 * 109.87372 * 55.13230 * 20 19 10 22 22 C 1.54410 * 109.88079 * 176.13913 * 20 19 10 23 23 C 1.53486 * 103.78046 * 122.22073 * 22 20 19 24 24 C 1.52377 * 116.30589 * 250.78451 * 23 22 20 25 25 C 1.54048 * 86.63209 * 216.51660 * 24 23 22 26 26 C 1.52367 * 116.32367 * 148.46505 * 23 22 20 27 27 C 1.53668 * 103.67651 * 19.60935 * 23 22 20 28 28 O 1.43860 * 109.88243 * 293.96948 * 20 19 10 29 29 H 0.96993 * 119.99932 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47149 * 65.13424 * 9 7 2 31 31 H 1.09008 * 109.46836 * 305.14144 * 9 7 2 32 32 H 1.09007 * 109.47000 * 48.06637 * 11 10 9 33 33 H 1.08995 * 109.47634 * 168.06615 * 11 10 9 34 34 H 1.08997 * 109.47126 * 305.09002 * 12 11 10 35 35 H 1.08999 * 109.47778 * 65.08910 * 12 11 10 36 36 H 1.09006 * 109.50327 * 297.54395 * 14 13 12 37 37 H 1.09005 * 109.50600 * 57.66702 * 14 13 12 38 38 H 1.08996 * 109.50927 * 296.91862 * 15 14 13 39 39 H 1.08996 * 109.51163 * 176.78032 * 15 14 13 40 40 H 1.08999 * 109.50688 * 298.74237 * 17 16 15 41 41 H 1.09002 * 109.50529 * 178.60519 * 17 16 15 42 42 H 1.08998 * 109.50639 * 302.32893 * 18 13 12 43 43 H 1.09009 * 109.50726 * 62.45976 * 18 13 12 44 44 H 1.09004 * 109.47115 * 196.31091 * 19 10 9 45 45 H 1.09006 * 109.46816 * 316.30399 * 19 10 9 46 46 H 1.08997 * 110.56311 * 240.79043 * 22 20 19 47 47 H 1.08997 * 110.56078 * 3.49967 * 22 20 19 48 48 H 1.08999 * 113.68635 * 330.94547 * 24 23 22 49 49 H 1.08998 * 113.68987 * 102.08563 * 24 23 22 50 50 H 1.08995 * 113.56954 * 269.75495 * 25 24 23 51 51 H 1.09001 * 113.63846 * 138.99901 * 25 24 23 52 52 H 1.09002 * 113.68646 * 257.90276 * 26 23 22 53 53 H 1.09001 * 113.68761 * 29.03199 * 26 23 22 54 54 H 1.09000 * 110.64246 * 83.05861 * 27 23 22 55 55 H 1.08994 * 110.64377 * 205.95991 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 7 2.2008 -3.6130 0.1221 11 6 3.0570 -3.7095 -1.0677 12 6 2.2343 -4.2322 -2.2470 13 7 3.1155 -4.4444 -3.4031 14 6 3.6519 -3.1681 -3.8979 15 6 4.6091 -3.4398 -5.0614 16 8 3.9184 -4.1681 -6.0801 17 6 3.3834 -5.4169 -5.6330 18 6 2.4139 -5.1652 -4.4752 19 6 3.0081 -3.4834 1.3425 20 6 2.1672 -3.8862 2.5554 21 1 1.7656 -4.8892 2.4113 22 6 3.0346 -3.8466 3.8322 23 6 2.2947 -2.8604 4.7464 24 6 2.9677 -1.5117 4.9699 25 6 2.4352 -1.5874 6.4134 26 6 2.4004 -3.1181 6.2444 27 6 0.8735 -2.8207 4.1634 28 8 1.0926 -2.9476 2.7393 29 1 -0.4850 0.8400 -0.0004 30 1 0.6956 -2.5972 -0.9344 31 1 0.5568 -2.5187 0.8384 32 1 3.4542 -2.7238 -1.3104 33 1 3.8812 -4.3942 -0.8678 34 1 1.7631 -5.1757 -1.9715 35 1 1.4655 -3.5039 -2.5051 36 1 2.8319 -2.5372 -4.2408 37 1 4.1891 -2.6633 -3.0949 38 1 5.4567 -4.0258 -4.7062 39 1 4.9651 -2.4935 -5.4685 40 1 4.1955 -6.0603 -5.2943 41 1 2.8530 -5.9003 -6.4534 42 1 2.0473 -6.1181 -4.0936 43 1 1.5741 -4.5661 -4.8274 44 1 3.8798 -4.1341 1.2723 45 1 3.3347 -2.4494 1.4539 46 1 3.0830 -4.8332 4.2930 47 1 4.0362 -3.4825 3.6035 48 1 4.0550 -1.5482 4.9018 49 1 2.5318 -0.7023 4.3843 50 1 1.4492 -1.1401 6.5382 51 1 3.1513 -1.2477 7.1618 52 1 1.5135 -3.5858 6.6719 53 1 3.3260 -3.6124 6.5395 54 1 0.2815 -3.6562 4.5370 55 1 0.3886 -1.8730 4.3970 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878159403.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:30 Heat of formation + Delta-G solvation = -75.092476 kcal Electronic energy + Delta-G solvation = -31543.386811 eV Core-core repulsion = 27580.312871 eV Total energy + Delta-G solvation = -3963.073940 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.43981 -40.56644 -38.89618 -37.52854 -36.42481 -34.49479 -32.46312 -32.14041 -30.82939 -29.53273 -28.48692 -26.87646 -26.62816 -25.84057 -24.98607 -24.18859 -23.32866 -21.78069 -21.40467 -21.13816 -19.51396 -18.47269 -17.67781 -17.23727 -17.03888 -16.74766 -16.58860 -16.41837 -16.25120 -15.98480 -15.97413 -15.81701 -15.49558 -15.27812 -14.68105 -14.51860 -14.14441 -14.08045 -13.89470 -13.64611 -13.35596 -13.18927 -13.07498 -12.86327 -12.79837 -12.67326 -12.59539 -12.37830 -12.27696 -12.09677 -11.96508 -11.90328 -11.78312 -11.65674 -11.61700 -11.36926 -11.17470 -11.06479 -10.93029 -10.66539 -10.47706 -10.32144 -9.46871 -8.92733 -8.07277 -6.21728 1.30855 1.31686 1.40870 2.37695 2.64787 2.95198 3.09874 3.19500 3.48100 3.50690 3.66344 3.86401 3.91030 3.96483 4.02868 4.04265 4.12976 4.17471 4.19137 4.27659 4.36554 4.39084 4.49249 4.51516 4.55142 4.60675 4.68930 4.73874 4.75704 4.80524 4.83019 4.84551 4.87179 4.89832 4.93321 4.96476 4.97932 5.04891 5.05660 5.09713 5.14796 5.24010 5.34960 5.38296 5.43912 5.54716 5.56002 5.89538 5.96060 5.98642 6.15958 6.17197 6.30498 6.35639 6.67498 6.99286 7.45407 8.95688 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011872 B = 0.003311 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.942620 B = 8454.895726 C = 9899.826677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.015 3.985 3 Si 0.941 3.059 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.529 4.529 8 H 0.048 0.952 9 C 0.205 3.795 10 N -0.539 5.539 11 C 0.073 3.927 12 C 0.078 3.922 13 N -0.531 5.531 14 C 0.015 3.985 15 C 0.071 3.929 16 O -0.406 6.406 17 C 0.067 3.933 18 C 0.014 3.986 19 C 0.064 3.936 20 C 0.085 3.915 21 H 0.064 0.936 22 C -0.125 4.125 23 C -0.113 4.113 24 C -0.135 4.135 25 C -0.135 4.135 26 C -0.108 4.108 27 C 0.059 3.941 28 O -0.379 6.379 29 H 0.259 0.741 30 H -0.016 1.016 31 H 0.037 0.963 32 H 0.018 0.982 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.003 0.997 36 H 0.017 0.983 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.109 0.891 40 H 0.071 0.929 41 H 0.119 0.881 42 H 0.102 0.898 43 H 0.024 0.976 44 H 0.088 0.912 45 H 0.028 0.972 46 H 0.099 0.901 47 H 0.079 0.921 48 H 0.089 0.911 49 H 0.037 0.963 50 H 0.074 0.926 51 H 0.083 0.917 52 H 0.079 0.921 53 H 0.102 0.898 54 H 0.069 0.931 55 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.419 -11.421 4.303 15.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.183 4.183 3 Si 0.767 3.233 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.568 4.568 8 H 0.066 0.934 9 C 0.079 3.921 10 N -0.262 5.262 11 C -0.056 4.056 12 C -0.050 4.050 13 N -0.256 5.256 14 C -0.114 4.114 15 C -0.005 4.005 16 O -0.325 6.325 17 C -0.010 4.010 18 C -0.114 4.114 19 C -0.065 4.065 20 C 0.027 3.973 21 H 0.082 0.918 22 C -0.163 4.163 23 C -0.113 4.113 24 C -0.172 4.172 25 C -0.172 4.172 26 C -0.145 4.145 27 C -0.018 4.018 28 O -0.299 6.299 29 H 0.068 0.932 30 H 0.002 0.998 31 H 0.054 0.946 32 H 0.037 0.963 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.021 0.979 36 H 0.035 0.965 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.127 0.873 40 H 0.089 0.911 41 H 0.137 0.863 42 H 0.120 0.880 43 H 0.042 0.958 44 H 0.106 0.894 45 H 0.046 0.954 46 H 0.118 0.882 47 H 0.098 0.902 48 H 0.107 0.893 49 H 0.056 0.944 50 H 0.093 0.907 51 H 0.101 0.899 52 H 0.097 0.903 53 H 0.120 0.880 54 H 0.087 0.913 55 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.258 -11.871 4.122 15.609 hybrid contribution -0.478 2.666 -0.165 2.713 sum 8.780 -9.206 3.957 13.322 Atomic orbital electron populations 1.70079 1.07379 1.26993 1.52121 1.25620 0.95367 1.02028 0.95304 0.85825 0.78966 0.80422 0.78116 1.20284 1.21003 1.19282 1.21779 0.92553 0.93055 1.49425 0.93430 1.19480 0.91649 0.85938 0.95056 1.62354 1.17622 1.44447 1.01784 1.21831 0.94996 0.98529 0.90226 1.21848 0.93248 0.99834 0.90102 1.62263 1.36412 1.20086 1.06862 1.22833 0.98565 0.91073 0.98920 1.22708 0.93363 0.97552 0.86906 1.87937 1.73614 1.34237 1.36663 1.22814 0.96397 0.85464 0.96291 1.22901 0.96063 0.99742 0.92685 1.22236 0.94850 0.99744 0.89631 1.22829 0.87499 0.92232 0.94721 0.91839 1.22753 0.99209 1.00555 0.93778 1.22407 0.95300 0.96718 0.96884 1.22787 1.00474 0.96202 0.97745 1.22893 1.01512 0.96970 0.95827 1.22664 1.03474 0.96305 0.92075 1.23209 0.95660 1.00944 0.81947 1.89283 1.53882 1.64239 1.22489 0.93249 0.99778 0.94557 0.96332 0.90155 0.89944 0.97865 0.96503 0.89956 0.90943 0.87264 0.91079 0.86323 0.87963 0.95791 0.89397 0.95365 0.88238 0.90245 0.89254 0.94358 0.90711 0.89872 0.90256 0.88004 0.91260 0.91246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.42 13.29 21.45 0.28 -57.14 16 2 C 0.02 0.90 5.46 84.66 0.46 1.36 16 3 Si 0.94 45.70 29.54 68.60 2.03 47.73 16 4 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 5 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 6 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.53 -30.00 7.17 25.60 0.18 -29.82 16 8 H 0.05 2.67 6.09 -2.91 -0.02 2.66 16 9 C 0.21 11.11 4.69 85.56 0.40 11.51 16 10 N -0.54 -23.35 4.59 -900.82 -4.14 -27.48 16 11 C 0.07 2.82 4.64 86.30 0.40 3.22 16 12 C 0.08 2.85 4.91 86.30 0.42 3.28 16 13 N -0.53 -16.34 4.73 -895.21 -4.23 -20.57 16 14 C 0.01 0.46 5.44 86.31 0.47 0.93 16 15 C 0.07 1.77 7.01 72.01 0.50 2.28 16 16 O -0.41 -10.76 10.83 -148.98 -1.61 -12.37 16 17 C 0.07 1.43 7.01 72.02 0.50 1.94 16 18 C 0.01 0.37 5.64 86.32 0.49 0.86 16 19 C 0.06 2.45 4.44 86.30 0.38 2.83 16 20 C 0.09 2.98 3.67 31.07 0.11 3.10 16 21 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 22 C -0.13 -3.24 6.11 31.24 0.19 -3.05 16 23 C -0.11 -2.98 1.05 -52.23 -0.05 -3.04 16 24 C -0.13 -3.70 7.34 30.74 0.23 -3.48 16 25 C -0.13 -2.81 7.98 31.28 0.25 -2.56 16 26 C -0.11 -2.03 7.42 30.74 0.23 -1.80 16 27 C 0.06 1.95 6.95 72.21 0.50 2.45 16 28 O -0.38 -16.41 8.40 -148.98 -1.25 -17.66 16 29 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 30 H -0.02 -0.95 6.59 -2.39 -0.02 -0.96 16 31 H 0.04 2.20 5.61 -2.38 -0.01 2.18 16 32 H 0.02 0.81 5.16 -2.38 -0.01 0.80 16 33 H 0.08 2.72 7.68 -2.39 -0.02 2.70 16 34 H 0.08 2.86 8.04 -2.39 -0.02 2.84 16 35 H 0.00 0.13 6.83 -2.39 -0.02 0.12 16 36 H 0.02 0.61 8.14 -2.38 -0.02 0.59 16 37 H 0.08 2.69 6.49 -2.38 -0.02 2.67 16 38 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 40 H 0.07 1.35 8.14 -2.39 -0.02 1.34 16 41 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.10 2.26 8.09 -2.39 -0.02 2.24 16 43 H 0.02 0.70 8.14 -2.38 -0.02 0.68 16 44 H 0.09 2.78 7.64 -2.38 -0.02 2.77 16 45 H 0.03 1.27 6.04 -2.38 -0.01 1.26 16 46 H 0.10 2.00 8.10 -2.39 -0.02 1.99 16 47 H 0.08 1.99 7.48 -2.39 -0.02 1.97 16 48 H 0.09 2.23 8.04 -2.39 -0.02 2.21 16 49 H 0.04 1.32 8.12 -2.39 -0.02 1.30 16 50 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 51 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 52 H 0.08 1.34 8.12 -2.39 -0.02 1.32 16 53 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 54 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 55 H 0.07 2.43 8.07 -2.39 -0.02 2.41 16 Total: -1.00 -70.24 409.66 -2.41 -72.65 By element: Atomic # 1 Polarization: 24.02 SS G_CDS: 0.84 Total: 24.86 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: 5.67 Total: -10.00 kcal Atomic # 7 Polarization: -97.11 SS G_CDS: -8.08 Total: -105.20 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -2.86 Total: -30.03 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -70.24 -2.41 -72.65 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878159403.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.447 kcal (2) G-P(sol) polarization free energy of solvation -70.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds